RNA id: XM_039790038.1


Basic Information

Item Value
RNA id XM_039790038.1
length 7414
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC120552205
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 16782072 ~ 16795124 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGATCATGTGATTCGAAAGGTGGGGCGTCAGACCCCGatggagaggagaaaaacaatagggGGTATTGATTTTGAAACAATTGCCTCCTCTCAGGCTGGTGAGTACCAGACAGCATTCATCAAAGTGTGCTCTGAGATGATCCAACCTGACCATGATGTATTCCAACCTACTGCCCAATGTAGCTGGGAAATAAATCTTCAAAGTGTAATTCAACATGTCAGAAAGACATTTCTAAGGTCACTGAAGCATCTCTCTCTTGAGTAGTTATCAGTAGACCTTAGAATAAAACTATTTATGGTTTGATTGGGAGACAGAGcccttttaaaaacacaacaaaaagcaAATAATAAAAAGCCCGGTCATAAACTACATCTTTCTGGACAAAGACCTGTTGATAAGACCAAGAATACAGCCCTAATCAAGGTCATAAGGAAACTGGCATCACACTGTGAAGCTACTCCAGACCTTGATTTGCCATAAAGCGAAGTCAAATAACAAAAAACTGTTCAGATGTTAAAAGACACTGTGCATGGATTAATGGACACAGGACTGTCAGAGTTAGTAACAAATATAACAGAATAAAAAGTTCCATGAGAAACTTGAAAACTGTCTAATTTCCTCAGAATTTCCTGGGAAGTGTAATTTGGCAATGGTTATACAGAAAATAGAGAATGTGTTCAATTAGTATACTTCTAATGAATTAATTCAAATGCATTGCTACCGTAGAGTCTTCTCGCCAGCAGGTCACCTGAACATGCAAAATGTGAAACTTGTCTACAGGCATGCATTCACGTCAACATATGctaaataaagtttttaaaaggtaaattcataataaattattatttacttGGATATAAAAGGAGCCATTGTTCAGAAAAAGTCATGTTTTGCCTATTATTGGTACCAAATAATATCTCTTTAATAAGGGAATTACTGATCTATAAAATAAAGGATTACCCAAAGATCTGTTGCTTTCGATCCACCACAATAGCAAATATCAGCCCAATTTGGTGTCTAAATCCCCCATTCagctgaaaaaaacacaaacaagatACCGGCTCCTGTGGTATACCTTCCCTGGAAAGCAGTCTCAGAGTCCTATGAGTCGGGTCAAAGCTGTAGATGGTATGAATGAAAGGGAAGAGGTGAAATGGAGATGAATATCAGCACAGTGACTGTGCAAATAGCCGAGATTGACTCAACCTGGTGTGGTCACAGTAGACCACTCCAGAACAGGACAGAAATAGCCAGCAAGCTACAAGTCCTGAATACGTGCAGATGGGTAAAAGGGTCAACTGTCACTGGGGCAGGAAtgaggcagagagagggagcgaaCCAGAGGGGCAGAGGCTCCATTatcagacacaaacatacaggaaatcagacctaacatatttacagtacaagGATTGAAAGAAAATAAGAAGGCCAGCGGATCTGAAGGAACTGGGAGCTGTTTTATGTGTTGTGACCTTCATTTTCTATGAAAAGAGGAGATCAATTGCAGATTTCAGAGACAGCTCCTTCATCCAAACCAAGGAGAAACTGTGTGTCTCGGTCAAAGCTATGTCCGCTCTCTATCTGTCCAAGGTGGTACCTCAGGGTTCAACACACAGCTTTTTAAAACCGGCACAAGGTCAGTTATCTGAATCTGGGAAAAGAGTCAAACCAGCCAAGATGGCCGAAGACCAAAGAGGGAAAGATGACCTCTCTCCACCTTCTTCAGTCAGACATCAGCCAGCACCAAAAGACATCCCACAGTCCATGCCTTCCCAACTTTCGAAAGAAAAGCTATACCAACAGCGGCAGAAATGTGAGCTGAGAAGGCTCCTGAAGCACACTCACCCAGAGCTGAAGATGTTAGATGAAGTTGTGGATGAAGAGCTTGCTGAGGTTTTGCGCTCAGAGACTGAGCTGACAGCTGGTGAAACTGGATACGAGGGAGAGGTCCTTTCAAGATGCTTGATATTTGAGAACTGTGCCCTGAGTAACAAAGTATCTCCTTACACCTCTAAGATGCACAAGGCAGAGGGAATGGTGGAGAGAGACGATGTCAGTAAAACATTAGCTGTGTTTAAGGAACATGAAGAGAGTCCTTGTAATGAAAGTGATAAAGGGATCATGGAGGATGAGAAAATGCTTGGGTCTAGTCCAGATCCTAATAGAGAGTGTGAGGAGGAGATGATACGAATAGATGTTAAGGCTACTAGAAGGTTATTTGAGAGTAAATCTGTGAACACATACAAACCTAATCCAGATAGGTTTGAGGCAAAAGTTTCTCTTTCTGGCGATGAGACAGAGGCagtccaaaaacaaaaacaggagtTTGAAATGTGTACCAAAGAGAATCTGCATAGCGAAAACAAAAGCAATGCATGTTCCACAAGTCTTGGCATGACGGATCAGGCCAATAAACAAAGCCCATGTGTTCATATCATTGGTCAAAGCACTGACTATGAGTTGTATGGTAGGGAAGAAGTTTCTACAGGTGAAACAGTCTTTGAGGGTGAGCCTACAAGCCTTTCTGATCCAGAAGAATTTAGGAAAATAATCAGAACGAGTGCGACACTTTTCCAAAACAACCCATTTATCCCAACAAACATTGAAAGAGAACATTCCTTTGTGCATACATCAAAATCCCAAAGCCCAGCAGAAAACACTGGGGCAACTCAGGACTATCTGATAGCTAATGTCAAGAACAGAGCCCACTTGTTTGAATCAATGCCATTTGACAAAATTAGGCATCAGGACAAGGACGAAATTGAGACGATGGTGGCGAACATCAAGGAAACACTGAATTCTCTTTATCATGTCAATGCCATACATTCAGATGGCTCAATCATTGAGGTGAAAGAGACAATGATAGCCAAAAAGGCCAAATTCACACTATCAGAGAGTGGgcctaaaataaaatatgacgaGGTGGCTGAAGGTGGTGCACAAAACTTCCTACTCCAGTTGCTACCACGAGCAAACCTAAAGCCTAAGATCACTTACCTAAAGGAGGGTAGTAAAGGAAGCATGGCAGCCACAGTGGTGAATGTACCCGTGCACCAGCATCACTTCACTACCAACCAAGATACAGAGTTTAAAACTGCCAATGTGGTTCAGCTTGTTGAGGATATTCTCAATCAAGATAACTCTCTGCGGAAGGGAGTGATTATCCAGGAGGATGCGGATAGATGTGCTGAAGTTGTTGTTTACTCCCTCTACAATTATTTTGATGAGGTTGATGTGAAAATGTATTGTCCCCCTCAAGGTACAGAGTATGATGAAACAGAGCCAGAAAGAGGTGATGTGAGTAAAGCAGACTatcaagaactaagaaaagggTTTATTGAATCAACCATAAGCTGCCTTCTAGAAACTCCCAAAGATCAAACTTGCCAAGGATCCATAAGGCCTGAAATCACAGTTAAAGGGAATGTAAAATTGTTTAAGAGTTGTATTGAAAAGGGAGATTTAGAGTATTTGAAAACTCTCCAGCCTGAACCAACAGTGCAAGAACAACAACTCACTCCTAACCAAAATGTGCCTGGACAAGGCCTTGAACTTCATCATGAACAGAGAAGTGATCAATTTGAGGAGAGTAATTCAGAATGGGTCCCAGTGGATGTAAAGAGACTAAAAAACATGTTCTCTGGATATCAAAGACCAACCCAACTAAAGCTAAATGTATGTGAAAATCGTGCTCAATCTACCACCATTTCTTCTGCATTCAAAGCTCAAAATGTGTCACTTGGAAAGAGCCGGTCCTCTACAGAATGCATTCATGTGCAAGTAAAGAATAGCTGTAGGAAGTGTGGTGGCAAAACACAAGAAGTACGTAACTCTATACTTGCACCACAGGGATCATACCTACATCTTGAGACACAGGACGATGACAGGGTCCACCAGGCTGAATTAGTCGAGGTGGTAGATGACAATGACGAGATCTCTAAACTCCAAACTGCAATACATAGTCTCCGACAGGCCACAATCGAGGCCAAATCTTTGCATCACTCATCACAAGAAAAACTTCTTGTTCAAGAACCTGTTGTCTCAGATACCTCAGGTGATATTAAACACTTAAGAACAGATGCAGAATTACCTCAAGAAAATGAGGACCAGAAAAGGGATGTACATGAGACAACATGGGATGAACTCCCATCAACCTCAAACATCACCTCCGAACATAAATCAGACTGCCAACACGAGGATACAGAGACATGCTGTGAAGACATTAATTCTGAAGAAGTACAAACTAttgagacatgcagcaaaatgGGTCAACAAGGCCAAGAGGTGGTCCAGAAATACTTTCAAGCTGCAATGGTGTCTGTACATAGTGCAGAAACAACCACTGCACAGCCAGAAGATGAGGAAGTTGTCTTTCACGGTAAACTTCAAGCAGCTTTGGATTCCCTGGAGAGATCCAATATCAATGTAAGTAGAGGAGATTTCAGAGCAGCTATGATATACCATGTGACTGAACCTAAATCAATTCAAGCACCACTGACACATGAGGTCTCCAAAGATCAAGTGACTGCAGCAAATGCGGCGTGCCCAAGCCAAAGTGAAACTCTAAATAAACCAGCTACAAGCGCGGTCTCAGAGAAAAGCAGAAGGTCTGTTGGTCAAAAACCAGCCATCCCACCTAAACCGGAGCATTTAAAAGTGAAACAAAGAGACATTCAATCAATCAACACAAAGAATCTTGAGGCAACCCAAACTAATACTGTGGAACCCAAAGAGACAGTTCCTCAACGAATGGCAATGACATCGATGTCACATAAGGATGAACTTAAGCAAGGCCTGTTCAAAATTAACACTGGTGCAGACTCAGGGCCTGATTCAGTGGAATATCAAAGAAATAAGCTTTTTGATGAAGCTACACAGATGGCAGAAGGAATTGAATTGAAGGAAATTGAAGTAAGGGATCAAGTCCGAGGTTCAGTCGTCATCTTGGAAAGTGATAACTCAGATAAGAATATCATTAAGCGACAACAGGAGATAAAAGCCACAGCAGAAGAGAAAAGCCCCCAGGATTTCCCAATCAAAGAGAATATGAATGAAAGAGATGAAAGCCATGTAGATTTTCATGAAGCATGTAAGAAATTTGGAGGTAAAAAGGCATTTTCAGCGAAAAATGCTCCTGTAAAGCCAAAAAGAGTAAAAATTCCCCAGCCTGACAATAAAAACCCAAAACACATGTCTGGAGATAATTCCTCAATTTTCACACATGTGGTTGAGGAACCAAAACCAACTCTTACTGATCCATTGTGCAATAACCCAAACACCTGTGGACAAGCTGCTGACAGCAAAGACAAGtatgaaaaagaaattaaacaagAAGGCAAAGTTGAGATGAGGGGAAAGAAAGCACGAACCGAGACAGAGGATGAACGCCGACAGCGTCTGTCAGTTCACATGGATGAGATCTTAAGAGGGAACATAACGGCAGCCATGGAAATATTTGACAACTTACGAAAGCAGGAGGAACTTCAGAGTATTCTTAGTCAAGTTGAGGAAGTTGAACAGGATACGAGCGAGGTTGATGTAAGGTCTCTGAGGGGAGTCTTTGAGAACGTCCCTGACCGGGTTGTCAGctcaaacaaaaagaaactaaaAAAGACTAAAGAAGAGAGGTTGCCATTAACGAGAGACAACACTGAAAACAAGTCCTCAATGGCACATGTTTTTGGAGATCTTGAGCGAGCCAGTGAAGAAATCATGAATCTAAAAGAACAGACTTTAGCCAGACTTATGGACATAGAGGAAGCCATAAAGAAGGCTCTTTATTCTGTCTCTACCTTGAAATCTGACTCAGATATTGCCGGTTTATCATGCCTGTTCAAAGAGTCATTAGGGACAGAGCAAGGATCCCCATCCTTTGGTAGTATTAGCAAAATTAGCATCGGGTCAAGCAGAACAAAATCACTGCAGACACTGGAAAACCCTACAATACAGGGAAACACAGCTCTGCCAGTTAGCCAAGGTACAAGAATTGAAGTAGCCCCTGCAAAACAACGAGCAAGTCCTCCAACTTCACCTGCCTTCATCTCCATCCAGTCGGCTGCTAAAAAAGAGGTGCCTCCACCAAAGACCACAATCTGCCAGACATGTCAGCACAGCCCAAAGACAGAGGAGAAATTCCGGACAACTAAAACGCTGACATGCAACAGTCCTGCTCAAAACAGAAAAAGGGATCCCAGAAAAGCAGGTCAAAAACAATACTCTTACAACCCAAAACGAGAGCTCAGTGTACTCGAGGTGCAGACTGACCCTGAGGGGAACAGTATCACGGGCACTAAAACAGTCACAGAGAATTATGAGAAGACTGATGACCTTGGGAACCGGTTTTACTCTTCCAAAACTTCCACTGTTGTCACTGCTCAGCCAGATACTACAACATCCACAAGTCAGGCAGTGGTCAGTCCGGCTATGTATCAGGTCACCAAGTACCCAGAAGTTCTGCTGCCGATCAATCAGAAACCTTAAATCATTCACAGACTGGTGCAGTCTTATAGTATTAGTCTTATGTCTTAACAGTATTAGCTAAGTGTTTTCATATATTGAATATTAATTTGTTATGTTAAAATGGACTACGGAGAGAAAGTGGAACTACAATTCCAGGAGGGCAACCTCAGAAGCCTGTGGCAAGGTCTAACAACTTTGACAGATTAACACCATAGTTCCCTCCAGGATCGTCCCAAACCTCAAGGACCTGGGATTAAACACCTCACTGTGCATGTGGATCTTCAACTTCCTGACATGCAGACCCCATGTGATGAGGGTGGGCAGACACACCTCTTCCACCCATATCATTGACACCGGAGCACCCCAGGGCTGTGTTTTGAGTCCCCTGCTGtactctctctacacacacaactGTGTAGCCACTTTCGACTCAAACACCCTTACCAAGTTTGCTGACGGCACAGCTTTGGAAAAGGCCTACCTGAAAGAAGTTAAGAACATGACTTGCTGGTGTCAGGGCAACAACGTACTCATGAATGTCAGCAAGACTAAAAAGATGATAGTGGAAAAAGCAGGGAAGGAACTACGTCCCCCTTAATATCAACAGGTCCTCTGGAGAGGGTGGACAGTTTTGAATTGTAAAAACCTGACAGGATTACGTTtaactgaaattgtatttaatataatttcatgtgacaaataaatgtatttattgattgatgTGCACACCTTTATTTGCGAAAATATGAATTGTGTTGGTTATTATTGCTTGTTTTTTATTAAGTTATTGGTAATTATTGATTTAAGATTTTCTTATTAATGTTTGAGGATTTATTTGTAGCATGTattcttttaaacattttgattTTCATTTGAAATTAAATATGCCTTATTGGTTTTAATTTATGCTTTTGTGTTcgttgttgcttttttgttttaaccAAGCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298209 lncRNA downstream 39235 16742287 ~ 16745412 (-) True G220382
TU298198 lncRNA downstream 83090 16694587 ~ 16701557 (-) True G220373
TU298100 lncRNA downstream 235923 16546928 ~ 16548724 (-) True G220300
TU298066 lncRNA downstream 303489 16479383 ~ 16481158 (-) True G220273
TU298062 lncRNA downstream 307132 16474561 ~ 16477515 (-) False G220272
TU298288 lncRNA upstream 93402 16887256 ~ 16888024 (-) True G220443
TU298291 lncRNA upstream 104335 16898189 ~ 16898537 (-) True G220445
XR_005637942.1 lncRNA upstream 321376 17115230 ~ 17398235 (-) False LOC120551964
XR_005637940.1 lncRNA upstream 347213 17141067 ~ 17398233 (-) True LOC120551964
TU298327 lncRNA upstream 347248 17141102 ~ 17398220 (-) False LOC120551964
XM_039789927.1 mRNA downstream 162966 16601629 ~ 16621681 (-) False plcd1a
XM_039789926.1 mRNA downstream 165733 16601629 ~ 16618914 (-) True plcd1a
XM_039789465.1 mRNA downstream 249849 16527664 ~ 16534798 (-) True LOC120551893
XM_039789532.1 mRNA downstream 257597 16519042 ~ 16527050 (-) True hhatlb
XM_039790160.1 mRNA downstream 266709 16514192 ~ 16517938 (-) True klhl40b
XM_039790405.1 mRNA upstream 85641 16879495 ~ 16881724 (-) True LOC120552381
XM_039790094.1 mRNA upstream 156801 16950655 ~ 16965739 (-) True bdh1
XM_039790517.1 mRNA upstream 172791 16966645 ~ 16977681 (-) True gyg1b
XM_039790518.1 mRNA upstream 172797 16966651 ~ 16977681 (-) False gyg1b
XM_039790696.1 mRNA upstream 186070 16979924 ~ 16987685 (-) True cpb1
XR_005638013.1 other downstream 499912 16266303 ~ 16284735 (-) False drd3
XR_005638012.1 other downstream 499915 16266303 ~ 16284732 (-) False drd3
TU297865 other downstream 719426 16064670 ~ 16065221 (-) True G220124
TU297855 other downstream 779883 16003879 ~ 16004764 (-) True G220117
TU297839 other downstream 811011 15968744 ~ 15973636 (-) False si:ch211-140b10.6
TU298248 other upstream 80795 16874649 ~ 16875300 (-) True G220412
TU298817 other upstream 1816382 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other upstream 1830872 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298948 other upstream 2145145 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 2521737 19315591 ~ 19326894 (-) True G221048

Expression Profile