RNA id: XR_005637973.1


Basic Information

Item Value
RNA id XR_005637973.1
length 1405
RNA type transcript
GC content 0.46
exon number 10
gene id LOC120552205
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 16782072 ~ 16795124 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAAACGCTTCACACCGTGTGCTAGTCTTGTGATACTGCGGAAATGTCTCTGATTGTCACAGGGAACAGACACTGACTGACATCTGTAAGGTGATAGAGCTATTTGAAAACTTTGTGCTGCTGTGACGTGATTGGTCATGGAGTGGAAGAGTAACCTGAGACGCACCCAGTCACTGAGGAGTGTCCCCTTGCCGTGTGACAAGCCCACCTGGACACAGGCAGGGCTGCGGGACAAGACAACATCTGTATCTCAGCTAGTTGCCAGGTATCAAACTACAGTGGAAGTAAGCGCAGCTATTCAAGAAACCTCACTCAATAATGGTGAAGCAAAGCCAAAGCAGGTGTTTAAAGAGATAACACCATCTCTTCTGGAGAGTAAAGAGACTCATCTGGAGTCTCTGATGAGGAGAAATGAGGCGAGGGAACAGTCTCTAGACAAAACCAATTTGACCCGCAGTAAGTCTATGGGGAGCCTTCAAAGCAGCGCTGGGTCCATCGGGGCCCTGAAGGCTCTGTTTGAGTCGAAGACAGCCACACCAAACAAGATGAAGAGCAGTTTCAGAGATGCAAGTTTCACGACACCTTACAAGGCAGCAGGCATCATGCCAGTGGTGAATGGAGAGGTTGAAGAGGTAAAGAGCTCTGCAGTGCAACCGAAGATCCAAATTCCTGCTGATGGTCCAGTCAGTGATGCTAAAACTGATGCAAAAGATCATGTGATTCGAAAGGTGGGGCGTCAGACCCCGatggagaggagaaaaacaatagggGGTATTGATTTTGAAACAATTGCCTCCTCTCAGGCTGATGAAAAGAGGAGATCAATTGCAGATTTCAGAGACAGCTCCTTCATCCAAACCAAGGAGAAACTGTGTGTCTCGGTCAAAGCTATGTCCGCTCTCTATCTGTCCAAGGTGGTACCTCAGGGTTCAACACACAGCTTTTTAAAACCGGCACAAGGTCAGTTATCTGAATCTGGGAAAAGAGTCAAACCAGCCAAGATGGCCGAAGACCAAAGAGGGAAAGATGACCTCTCTCCACCTTCTTCAGTCAGACATCAGCCAGCACCAAAAGACATCCCACAGTCCATGCCTTCCCAACTTTCGAAAGAAAAGCTATACCAACAGCGGCAGAAATTTTCAACCAGCTTGTCGAGAGATGTGTTCAGCCTGTTTGAAGCCGGTTTATCCAATGGAAAAAATTACTGctgacaaatacatttttcacaaaacTTGCTTTTGTTGTAAACAGTGCAAGACAAAATTAAGCATGTACAATTATGCACCTTTATACGGGGAATTCTACTGCATATTTCACTACCAACAACTGTTCAGAAGAAAAGGGAATTACGATGAGGGCTTCGGACATGCTCAACACAAGAACCGATGGCTTCTAAGAAACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298209 lncRNA downstream 37657 16742287 ~ 16745412 (-) True G220382
TU298198 lncRNA downstream 81512 16694587 ~ 16701557 (-) True G220373
TU298100 lncRNA downstream 234345 16546928 ~ 16548724 (-) True G220300
TU298066 lncRNA downstream 301911 16479383 ~ 16481158 (-) True G220273
TU298063 lncRNA downstream 305554 16472248 ~ 16477515 (-) True G220272
TU298288 lncRNA upstream 92132 16887256 ~ 16888024 (-) True G220443
TU298291 lncRNA upstream 103065 16898189 ~ 16898537 (-) True G220445
XR_005637942.1 lncRNA upstream 320106 17115230 ~ 17398235 (-) False LOC120551964
XR_005637940.1 lncRNA upstream 345943 17141067 ~ 17398233 (-) True LOC120551964
TU298327 lncRNA upstream 345978 17141102 ~ 17398220 (-) False LOC120551964
XM_039789927.1 mRNA downstream 161388 16601629 ~ 16621681 (-) False plcd1a
XM_039789926.1 mRNA downstream 164155 16601629 ~ 16618914 (-) True plcd1a
XM_039789465.1 mRNA downstream 248271 16527664 ~ 16534798 (-) True LOC120551893
XM_039789532.1 mRNA downstream 256019 16519042 ~ 16527050 (-) True hhatlb
XM_039790160.1 mRNA downstream 265131 16514192 ~ 16517938 (-) True klhl40b
XM_039790405.1 mRNA upstream 84371 16879495 ~ 16881724 (-) True LOC120552381
XM_039790094.1 mRNA upstream 155531 16950655 ~ 16965739 (-) True bdh1
XM_039790517.1 mRNA upstream 171521 16966645 ~ 16977681 (-) True gyg1b
XM_039790518.1 mRNA upstream 171527 16966651 ~ 16977681 (-) False gyg1b
XM_039790696.1 mRNA upstream 184800 16979924 ~ 16987685 (-) True cpb1
XR_005638013.1 other downstream 498334 16266303 ~ 16284735 (-) False drd3
XR_005638012.1 other downstream 498337 16266303 ~ 16284732 (-) False drd3
TU297865 other downstream 717848 16064670 ~ 16065221 (-) True G220124
TU297855 other downstream 778305 16003879 ~ 16004764 (-) True G220117
TU297839 other downstream 809433 15968744 ~ 15973636 (-) False si:ch211-140b10.6
TU298248 other upstream 79525 16874649 ~ 16875300 (-) True G220412
TU298817 other upstream 1815112 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other upstream 1829602 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298948 other upstream 2143875 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 2520467 19315591 ~ 19326894 (-) True G221048

Expression Profile