RNA id: XM_039790046.1


Basic Information

Item Value
RNA id XM_039790046.1
length 4968
RNA type mRNA
GC content 0.50
exon number 9
gene id tgfbr1b
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 5854640 ~ 5895766 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCAGCGCTGTGAGAAGTTAGCAGTCGGCTGGCAGATTGGTCCGTAGCCACGATGGATGCAATACCATGCCTTCTGTTTGTCCTCCTGTTCGGGACACGGATACAAGAACATACCGCCCTCCAGTGTTACTGTGACCGCTGCAGCGCCAACTCCAGCTGCAGCACCGATGGCGTCTGCTTCGTCGCCATCCGTAAGTCGGGCGGccagctgaccactgagcagcgCCAGTGTGTGCACGAAAACGAACTGATCCCGCGAGACAGGCCCTTCATCTGTGCCCCATCCGTCAAACAAGACAAGGGCATTTACCCCTTGTGCTGCACCACGGACAACTGCAACGAAAAGCCTAAACTGGATATCATTcctgTACCCACAGTGAAGACCCCTCCTCTGGGCCCCGTGGCCCTGGCAGCGGTGATTGCCGGccccgtgtgtgtgttctgcctGCTGCTGGTCCTGGCCTTCTAcgtctgccacagccacagggGTCTGGGGGCCGGCGGTGCAGGggcccaccaccaccaccaccgggTGCCCAACGAAGAGGACCCCTCCATGGACCACCCCTTCATCACCGTGGGAACAACGCTGAAAGACCTCATCTATGACATGACCACCTCGGGCTCTGGATCAGGCCTGCCGCTGCTGGTCCAGAGGACTATCGCCAGGACCATCATCCTCCAGGAGAGCATCGGGAAGGGCCGATTCGGGGAGGTGTGGCGGGGTAAGTGGCGTGGCGAGGAGGTGGCCGTGAAGATCTTCTCCTCCCGTGAGGAGCGCTCCTGGTTCCGCGAGGCCGAGATCTACCAGACGGTGATGCTGAGACACGAGAACATTCTGGGCTTCATCGCTGCTGACAACAAAGaTAACGGCACGTGGACTCAGCTGTGGCTGGTGTCGGACTACCACGAGCACGGCTCCCTGTTTGACTACCTGAACCGCTACACAGTCACTGTGGAGGGCATGATCAAACTGTCCCTGTCCACCGCCAGCGGCCTCGCACACCTCCACATGGAGATAGTGGGGACACaagGGAAGCCAGCCATTGCACACAGAGACCTGAAGTCCAAGAACATCCTggtgaagaagaacgggacgtgCTGCATCGCCGACCTGGGGCTGGCCGTCCGCCACGACTCGGCCACCGACACCATCGACATCGCTCCAAACCACAGAGTGGGAACCAAAAGGTATATGGCTCCGGAGGTACTGGACGACTCCATAAACATGAAACACTTTGAGTCTTTCAAGCGAGCGGACATCTACGCCATGGGCCTGGTGTTCTGGGAGATCGCCAGCCGCTGCTCTATGGGAGGCATCCATGAGGACTACCAGCTGCCCTACTACGACCTGGTCCAGTCGGATCCATCAGTGGAGGAGATGAGGAAGGTGGTGTGTGAGCAGAAGCTTCGGCCCAACATTCCCAACCGCTGGCAGAGCTGTGAGGCCCTGCGGGTGATGGCCAAGATCATGAGGGAGTGTTGGTACGCCAACAGTGCCGCCCGACTCACCGCTCTGCGGATCAAGAAAACCCTGTCTCAGCTCAGCCAACAGGAGGGCATCAAGATGTAGACATCcctaccaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctctgactGGCATCCATATCGTTATCATTACAGCATTATTATCttcattattattcatttgCTGTGCCCCCTTTGGTTCGAAGGGAACTGAAGACTTTGCCCCCTGagctctttttttctcatcCCATTTCCTTCATTGACAAACTGATGAGTCGTGAACgtgaggaggtgtgtgtgtgtgggtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgcgtgtgcgcgcgtgtggTGCACTGTGCTGACGTGCAcacaggatggatggatggatggatggatggatggatctaATGAGGGAGGGCCGCGAGCCATTAAAGGATATCCTCCATCCTCCTTTGCTACATTCATCACATGGGACCCATCTCAAGTCCCGCCTCCACCACTCATCACAACCAATAAGAGCTCAGAGCCCGTCAGGTTACCATTAGGCAAGCCAGGCAGCTGGGAATCAGCTGGGCGGCCTCATTGTATATCAGCATTAGAGAGCTAAGCTACTCTTCAGTAGGGCTGCACCTCGCTCATTCACATCTTTGAAGAGCGCTGCGAGTCATGGGAAATGTCCTCCCACCGGAAACGAGCCCAAGGGAACTTTTGGAATAGATCCATGTGATTTGTGGCATTAGCATGATATGTACATATTTGAATGTGTGAGGTGCATAATTGGTTCTGATCACAGGGACGCTGAGCAGTGTAACATGTACCACACTTGAGTGACCTGCTAGTCAAATCCAAAGACAAACGGGATGAACAGTGCACATTTGGTCCGACGTGCTCTGTGGTTTAGAGGTGGAGCTTTGTTCCACTGGTCCGCAGCTGTCGGAGCCGCTCAGCCATGATCCAGAGTATTTCAGAGAGTAAAGGTGGCGTTgtgtgcagccctactgttgAGTTGTCTTACAGTAGCATTGGGAACTGAAGCGTGGACCCGGGGGTTATGGGACGCTCTGTAAGCCGCCCTGCGGGCTCCTTCATCGCTTTAgttctctctcatctctgcaACGCGTTTGCACTGTTGTATATCCGTCACTCCCCCAGGGAGTCGGACAGGTCAGtttaatttattgtttgtttgttttttcaattttcGTTTTGGTGGCAggggatcttttttttttttttttttttttgctaaactAAACTGGACATGATGACCTCATTCATTTTTGGCGAACATGATCAACATATGCAATATACAGTAGATAAATGTGTCTATTTTCTATACTGTGCTCTGCTAAACCACAAACCGCAAGAACAACAGCAACAGCGCTCAGCTGCCACCATGCCTTCCAACCAGCTGTTACCGGAAAGTGCCAGTGCTTTAACAACCCAACTCCTCTCATGTCGgctgggtgggtgtgtgtgtgtgtgtgtctgtgtgtgacacgctgtgtgtttgtgtgtatgtgtcagagAAGAGGCCTGCCGAGCACACAGCGCGCTCGTACTATGCACACCCAAGAAAATAGGTACGCAAAGCAAGGAGGGGACACACAGCAGCGTCACAGCACCCCAAGTCCAGCCGACTCTCTGGTGCCATCACAACCCCCCCCCTCACCGACACCGACCACCTCAGCAACAACTCATCGTGCAGCGAGTCTGGACAACACGCTCCAGCACCTCAAACTGTGTTTATTTGGAAAGATAATGCCACAGAAGCTGGCGGCGGCTTTGgaaaaaagacacaaagactTGTAAGCATTACTGATGTTGCCCTATAAATGTAAACTCTTGGATTTCTGATTTTTGATCCTTTCATGTCAACTTTTTTCTCCTCCTGTAGGATAATCATCAACAAGGAggtacattcattcatttaaatataGCAAACGGAGATTTACTAAGCCATAGATTTTCCAGGttatgtataattttttttcttcttttttgtggcAAGGTCTTTtctactataaaaaaaaaaaaagatgaaaatgaaaatgtgcatcaaaaggacaattttgtcattTCAGCTTAGCAAGCCTTAAGGGACCAACACATAAGAGTCAGGATCTGctcttattctttctttctttatttgtgtttttagtttttaatgaaaaaagatttatatatacatatactatatAATTGATTACTATGATAAATGTGTCATTATTCTATctaaaggacaaaaaaaatatatgcagCACCcgatttcacagtttgtttcgGTCAAGTGTTTGTCCTTTTGCCAGGTTGCGATACATCTGAACGCGCGGACTGACTTTACAGAGATGTGTCCCGAGTTCCACCGGAAGCACTTGTCTTTTTAGGACAAGTCAAAGCAAGTCCGTGATGAGATCCAGTTTAAATGCACAGCATGAAGCAGTCAGTGATGAATACACCGAGTCAAAGAGTCTTTCGATTGTTCAGCAATAAGTGCACTTGTGAACCACTGCAGGGTTGAGTCGGTCTGTCTCCGTTGTTTGTCTTTGCGGTTTATTGATGTGCTGCTACGTAGTTGTCCGCCTCGCTTCCCGAGCGGAGGCGAGAGCTGGCGTTGGATGTAAATACCTTTCAGGTCGTCTGAATCTGATCATTTTTGTGCCATGTTGCTCCGACGCGAAACCAGCTCGTCGTCAACGAGGAGTTGTCGTTCTCTGCTTGGCGGTGTTCGGCGAGAATGGAAAGCTGCGACCTCCGTGGGCCGTGGTGGGAAGCCACTGAGTACACGCATACCGAACAGCACGGTTCGAAATCCACTGAAAGCTAGTTTCTTCTACTAGGAGTGTAGAGGAGGGCGAGGAACAAAGACATCCACTTCTGGTTGAGTAAAGTCCTTACAGTAACTGATCATGTCAAATAGATGGATAATGTCCTAATAATCTGGCATACATCCCGTGTAATGTCATTATTAGCATTAATGCCTTTCTTCAGGAGAAGCTCAGTGCCCATTTCTTTGCAGACAGCACTTTGACATGGATGTCACAACCGGTTGAGTCGTGAAATCCATGCCATGGATGTCACAACTCAACCGGTTGAGTCATTAGCACTAACATGGATTCCATGTTAGTGCTAATGACTCAACCGGTTGTTTTTGGGTTGATTCAGAGCCTCCCGTCATCCTTTTTAAACTTTGGTAAGAAAGAACCCAAAGTTTGACAAATAGCAGACACATTGGGATGTAGTTCACTGGTCCGAGtcgtgaatttttttttttttttagttttttttaaatatgtagaaATGGTCAGCAGTGGCAGAATGTGACACATTATTGTAAATATACAAAAGAAGAAAGTTGCCTGATCTTTGAAGAAAGTGAAGTGGAACTCGCTGCTATATTAAATACAAAAAGGGTGACGGACTA

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K04674 TGFBR1, ALK5; TGF-beta receptor type-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295139 lncRNA upstream 97219 5722808 ~ 5757421 (+) False G218067
TU295138 lncRNA upstream 106396 5722808 ~ 5748244 (+) False G218067
TU295137 lncRNA upstream 126754 5722808 ~ 5727886 (+) False G218067
TU295136 lncRNA upstream 129131 5722808 ~ 5725509 (+) True G218067
TU295129 lncRNA upstream 224422 5629711 ~ 5630218 (+) True G218060
TU295166 lncRNA downstream 57343 5953109 ~ 5954354 (+) True G218083
TU295245 lncRNA downstream 189298 6085064 ~ 6085649 (+) True G218141
TU295255 lncRNA downstream 333009 6228775 ~ 6228976 (+) True G218150
TU295261 lncRNA downstream 354972 6250738 ~ 6258612 (+) True G218155
TU295317 lncRNA downstream 552382 6448148 ~ 6449203 (+) True G218190
XM_039790206.1 mRNA upstream 37013 5750881 ~ 5817627 (+) True reck
XM_039790919.1 mRNA upstream 299029 5535647 ~ 5555611 (+) True LOC120552695
XM_039789543.1 mRNA upstream 965929 4881288 ~ 4888711 (+) True LOC120551947
XM_039789744.1 mRNA upstream 1097823 4618641 ~ 4756817 (+) False plppr5b
XM_039789959.1 mRNA downstream 14111 5909877 ~ 5928609 (+) True lancl2
XM_039789960.1 mRNA downstream 38254 5934020 ~ 5948852 (+) True vopp1
XM_039789958.1 mRNA downstream 384836 6280602 ~ 6454013 (+) False mpp7a
XM_039789954.1 mRNA downstream 384838 6280604 ~ 6454013 (+) True mpp7a
XM_039789956.1 mRNA downstream 384839 6280605 ~ 6454013 (+) False mpp7a
unassigned_transcript_1406 other upstream 263557 5591002 ~ 5591083 (+) True trnas-gcu_66
unassigned_transcript_1405 other upstream 264749 5589807 ~ 5589891 (+) True trnas-gcu_65
unassigned_transcript_1404 other upstream 266112 5588447 ~ 5588528 (+) True trnas-gcu_64
unassigned_transcript_1403 other upstream 267302 5587256 ~ 5587338 (+) True trnas-gcu_63
unassigned_transcript_1402 other upstream 268663 5585896 ~ 5585977 (+) True trnas-gcu_62
unassigned_transcript_1407 other downstream 1385940 7281706 ~ 7281777 (+) True trnaw-cca_30
unassigned_transcript_1408 other downstream 1393464 7289230 ~ 7289301 (+) True trnaw-cca_31
TU295439 other downstream 1471745 7367511 ~ 7373341 (+) False LOC120552660
TU295442 other downstream 1471745 7367511 ~ 7373341 (+) False LOC120552660
TU295651 other downstream 2654104 8549870 ~ 8581127 (+) False LOC120552265

Expression Profile