RNA id: XM_039790129.1


Basic Information

Item Value
RNA id XM_039790129.1
length 4858
RNA type mRNA
GC content 0.58
exon number 11
gene id si:ch211-230g15.5
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26110407 ~ 26148023 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCGGAGAAACATTGCATGCTGCAGCTCGGTTGTTCCTGGGAGAGTCTGTGCGGTCCTCCTGAGCTCTGAGTGGTGCTGTCTCGCCGCCGCCGCCCTGTGAAAACTGCCTTCCATTGCATTTCTCCTTCCAACCAACGGACTAACCAGGCCCCTCGCAGCCGCTTAACGGTGGCCCAGAGGCGGGCTGAGTTCCCACCACAGACCCGGCAGGTGTAGTAGCGGTGGTGGTACACCGGAGGACAGCGTGCACCACAAcacaccccctcctccccccgtCTTGGTTCTGGATTTACGGACTGCTCCGTGGGAAAAGCCCGGGATGTGACGAAATCCTAATCAAAGTgcgacacatgcacacaagccCATGCACACCATAAACAGGGCCTGTTTTGCGCTGCAACTTTGCGGTTTTTTGTTGCCTCTCTGCGGGAATTTAAAGGCAGATAATCGCAGGTGAGGCTGGGGGATTGTTATCTGGGGGGAGCGTGACGCGCACttcgcagcagcagcagcagcagcccctgCGCTGTCAGACGAGGAAGTGAGGCTTCATACACGCCCATTTCAGCCTGTCGACCCTGCTGTAAAAAGCACAGAGCCGCTCATCAGATAACAGCAACAGACTTTCTAAACATGCGTTCACTTTCGGGTGGACGACACCGGGAATAACCTGCAGGACGACGCCGATTTCAGCGGTGCGTTTAAGTGTTGAAGGATGGACAGGGAGCTGTTACGTCCGAGCCAATCAGAACACAGAGAAGCCTCCAATGGAACCAGCCTTCAGACTTCCACCGCCACCGCCACGGCCGACACCTCGGCCCCTGCGACCCCCACGCCACCTCGGCTCACCCCCAACCCGATGCTCCTGGACTCCCCCGCGCCCACGCTGACGCCCAccacctcctcccctcctccccctctcaccCCCGCTCCCTCCGTCTCCACAACCCACGTCCTGAAGATGGCGGCGGCGGCTACGGCCGGCGCTCCGTCCCCCCACATCCTCGTCCCCGCTCCCCCTAAACTCACCTCCACCGCAAGCCCCGCCCTCCGCACGTACTCTCGCCCGATCCTTCCATCGCCAGCGGGCGCCTCCAAAGCACCTACCACAcagacctcctcctcccctcttctccctccttcctcttcttcctctcccgTCAGAGCCAGCGTCACCTCGCCCctgctctcttcttcctcttcatcgCACAGCATCACCGCCACGTCAGCCAAGACCTCCAGCAGCCTGACCAATGGGAACACAAGGCCTGTATCCATGTCGACCTCCACACCGATCACGCCCTTTCACACACCGGCCAGTCCACCTGGCAGACAGGTATCACACACTCATCCTGTGGGCACACCTGGTCTGGTGCGAGCCAATCCGAGCCCCTCCCTTGTGAAGCAGAGGGTATCCCAGCAGACATTGCTCCTAGGGAAAGGTCTCAAAGGGTCTGGCCAAGACCAGGTGCTGCTTAGAGCTCAGATgcTCCAGAGTCTCACCCTGAGGCCTCCTCCCCCAGGGGCCCTCAccatccccccctccctccgccTCAAGCCCCCCAGCTCCACCCCGCCCCCCCTCTCTCGCCCTCAGGCCcccctcttcccccctctcaGGCCGCGCCCGCAACCCAGCGCCACGGCAACGGAGAGCCCCAGCACGCCCAGCCGCCACCTCTCCGTCCCACCTCCAACTTTTTACTCTCCGGTCCGAGCCGTCCCTCTGAGACCCAGACTTCACTCTCCAAACGGCCACAGAGCGCCGTCGCCACGGCAAACCTCAACCCTCCAACCGATCGCTGCCGCCCCCACCTGTCAGGCCTCTCCCGTCAGCCGGCCGCTGGCCGGAATAAAGAGCTGTCCGTTAACTAAAACCTTGCTCGGGCCCGGCCAATCCCAGCACGGGTCGTTGTCCGCGACCAACCCCGTGTCCGCTTCTTCCCATTTCGAGCGCTCGCCGTCTGCGGCCAGGCAGCTGCAAATCATCGCCCTCTCTCGCCAAACGCAACCTTGCACGTACGCCCCCGCCGTGCAGCCGGCGCCTTCTGTCGTAGAGTCGCCCGAGCTGTCCGCTCAGTCAAAGAGGACGTTGAGCGCTGAAGACtcgcttcctcttcctctaaaCCCACCATTGCCAAAAACTGCCTCTCCCCTGCCCTCGCCTCCGTCTCTCCCGAGTCCAGCATCCCCTCCGAGTCAGTCGGGTCCTCAAACACAAACTGTGAGCCAGAAAGGAGAGGCGAAGGAGAGCGACGAGCAGCGCGAGAGAGGACGAGGGCTACGCCAAGGAGGCAGCGTCGGTAGAGACCCGAGGGATGACCAAAGAGAGAAAGCGAAGGAGGAGAAACCGAGGCTTCCACCCGAGAAGGAAGGAAGCGCCGCCAGTCAGATGGAACAGGATGTCGAAACAGGCAGAGAGGAAGAACAAATGGAGGTGACCGAGGAAGGCCAGAGGGCAGAAAGAGGCAAGGAGAAAAAgatgatggaggaggaggaagaagaagaagaagaggagaccGCCATGGACCAGTCTGAAAACCTGACCGGTCAGATTCTCCATCAGCACAAGGACACGGATCCGGTCCCGACGCCTGACGCCGTTAAAGAATCCAGCATGGAACCAAAACCCATCCTGGGACTCATTTCAGCTCCAGCCCCAGCACCAGCCCCAGTACCAGCTCCAGTAACACTCCCAGTGACAGCCACAGTAACACTCCCAGTACCAGCCCCGGTAACACTCCCAGTACCAGCCCCAGCAACAACTTCAGTCCCAGCCCCAGTAACACTCCCAGTACCAGCTCCAGTACCAGCCCCAGTAACAGCTTCAGTCCCAGAGGTCTCTGTCCAGAGTCAGAGGCTACCAGATTCCCTGCAGCCGGTCATCCAGGAGGACTTCTGTGAGAACATGTCGACGCAGTCTGACAACCAGTCAGCGTTGTCCAGCCTCTCCTCCCAGTCTCCCCCATGCTCGCCCTTAATCTCCCCCTCGGGGGAAAACCCTCCCCCCCTCCTGCCCGCTCAGACCGCCCTCCCGACCGCGCTCAGCCTATCGCACCACGAGGTGGAGAAGGTCGACAAAGCGGTCGGCGAGTCCCAGCACCCGGCCGGGGCCGAGACCGATACGGAGCCCCTCGGCCAATCTGGAGACAAGTCGGAGAGCTTCGGCCAATCGCAGAGCAGCCCCTGGGAGATGAGGGCGTGGCCTGAGGGGCACCAGGTTCTGACTCACCTGGTGGAGGGATTTGTCATCCAGGAGGGGCTCCAGCCATTTCCTGTGAACCGCTCGTCCCTGCTGGTTCCAGAGCCGGTGACCAAACCGGAGGAGGTGAACGGGACCAATGGGAGCGCGGCGTTGCCTGTGACGGACACAAAGAAACAAGCTGCGCCCTCCACGGAGTCGGagggggaggaggcaggagacACGGACGACCCCGCCAACAGGTCGGCCCACAGGGACAGGACCGTGCTGCACTGTCAGTTCTGCGGGAAGAGAGGCCATGCACACAACTTCATGCGGTCCAAGCGCTTCTGCTCCACTTCCTGTGCACGCGGGTTTAACGTTCGCCTGACGAAGCGCCTGCGGGCTCTGAGTGCAGGTAGTCGGTCCGAGAGGCCCCGCCCGGCCCTGAACAGGGCCGAGTCTGTTCCCGGGAAGCCTCTTTTACTGCGACTGCCTCGTGATCTGTGGAGCGCCGGGCGGCGCGAGAAGGATGGGAAGGAGAAGGTCGCggcggaggaagaggaggaggaagaagaggaggaggaggaggacatggagggaggaggggaggaggaagacGATGACGGCGGGGAGGAGGATCCTGCTGTTGCCATGACAGCCAGGATGGAGCGCCGGGCGACGCGGAGAGCGAGGAGGGCGTCTGCGCCCGCGTTGACCAACGCCTCGACTCCCAGCAGCACGTTCAAACCCGCCCCGTCCCAGTGGAGCGTGGAGGAAGTGACCGCCTTCATCCACACGCTGCCAGgCTGCGGCGACGTGGCCGAGGCTTTCCGGCAGCAGGAGATCGACGGCCaggctctgctgctgctcaccGAGGACCATCTGATGACCAGCATGAACATCAAACTGGGGCCGGCGCTCAAGATCTGCGCTCACATCAACGCGCTGAAAcaccagtgagagagagagagagcgagagcgagagcgagaggaTAACAGATAACGGACCGATGCACAGAAACAGAGGAAGTCAGGGGGCGGGGGATGTGGAAGGaaaatcagagaaataggagAGAAAGTTAGACgtgaaaggaaaggagagagtttacgaaaaaaataaaaataaaagctgacACCAAGGATGACAgaacaaagtcacaaaaagagATTTGCGGTAATTTATGAGATTCTAAATCGGAGGTGTGGCCTTAGGAGACGGGAAGAGAAGACACCAGAGTCTTCATCAGAAACTTCATCGGTTTTGGGTCAGAGgatttttgtaactttgtgtacATTTTACATGCCGCTGGAGAGTGTAAATTTGAAGCTATTTCATGAAGGATTTTGAACATTTAATATATAAAATTTgtctatttagtttttttttttttttttttagaaacgtGACGTCAGCGACACATCTATCCAGTAGCTAACATAACCGGtgtgtgtaaaaacaaaaataataacaatacgtAGACTTTGTTAGTGATTTAATGAAAGTTTAATGTTTTATATCACTATATTCTGGACAAAAACATGTATgtggattaaataaaaaaaagagagagagcgagagagagtcACTATCAGGGTAGAGACTGGTGTCTTTAATCGTCACATTTTTATGGTATCATGCttgaaattatttaataaatgaataattaatCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302320 lncRNA downstream 3420 26106712 ~ 26106987 (-) True G223371
TU302282 lncRNA downstream 23727 26026105 ~ 26086680 (-) True G223348
TU302310 lncRNA downstream 36465 26071089 ~ 26073942 (-) True G223363
TU302295 lncRNA downstream 74606 26035415 ~ 26035801 (-) True G223354
TU302281 lncRNA downstream 86912 26022960 ~ 26023495 (-) True G223347
TU302421 lncRNA upstream 285289 26433309 ~ 26464216 (-) False G223449
TU302422 lncRNA upstream 285289 26433309 ~ 26464216 (-) False G223449
TU302423 lncRNA upstream 285289 26433309 ~ 26476967 (-) False G223449
TU302429 lncRNA upstream 313306 26461326 ~ 26463045 (-) True G223455
TU302417 lncRNA upstream 315273 26463293 ~ 26464216 (-) True G223449
XM_039790611.1 mRNA downstream 380 26100888 ~ 26110027 (-) True cldn11b
XM_039790947.1 mRNA downstream 276467 25817429 ~ 25833940 (-) True mynn
XM_039790604.1 mRNA downstream 297624 25801105 ~ 25812783 (-) True lrrc34
XM_039790716.1 mRNA upstream 175473 26323493 ~ 26345733 (-) True rmc1
XM_039790717.1 mRNA upstream 204611 26352631 ~ 26375762 (-) True riok3
XM_039790721.1 mRNA upstream 335909 26483929 ~ 26502727 (-) False LOC120552560
XM_039790720.1 mRNA upstream 335909 26483929 ~ 26502727 (-) False LOC120552560
XM_039790719.1 mRNA upstream 335909 26483929 ~ 26502727 (-) False LOC120552560
TU302290 other downstream 51345 26054519 ~ 26059062 (-) True G223351
TU302256 other downstream 67543 26041843 ~ 26042864 (-) False G223328
TU302257 other downstream 67543 26041843 ~ 26042864 (-) True G223328
TU302261 other downstream 116910 25983594 ~ 25993497 (-) False G223331
TU302230 other downstream 276782 25828091 ~ 25833625 (-) False mynn
TU302346 other upstream 68865 26216885 ~ 26218324 (-) True G223395
TU302395 other upstream 255981 26404001 ~ 26409357 (-) True G223433
unassigned_transcript_1419 other upstream 299666 26447686 ~ 26447759 (-) True trnai-aau_30
unassigned_transcript_1420 other upstream 301823 26449843 ~ 26449916 (-) True trnai-aau_31
unassigned_transcript_1421 other upstream 318417 26466437 ~ 26466510 (-) True trnai-aau_32

Expression Profile