RNA id: XM_039790150.1


Basic Information

Item Value
RNA id XM_039790150.1
length 1757
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC120552264
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8523276 ~ 8548475 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAAACAGAAGTCTACACCTTCTTCCTCGAGGACCACCAGGAAAGTCTCTGTCTACACAATGGCATCTCCAACCCCTCTGTCCAAGGCCAACACCACCTTCTCTCTGGCTTTGCTCAAGAAGTTTGGAGATGACAACAAGACTTCAAACATCTTCTACTCCCCTTTCAGCATCTCTTCAGCCCTGGCTATGGTGATGCTGGGGGCCAGAGGAAACACAGCCACACAGATGTCAGAGTGTCTGAAAACCAAGGATTGTCAGGATGATGTCCATGTTAGCTTTGCCCAACTGCTGAGTGAGCTCAACAAGGCTGATGCTCCGTATGCCctcagtgttgccaacaggcTGTATGGGGAGCAGTCCTACCAGTTTGATGAGGATTTCTTAGGAAAAACCAAGAAGTACTACAACGCAGAGCTGGAGACTGTTGACTTCAAAGCTGACTCAGAGGCCGCCAGGCTCAACATCAACAGCTGGGTGCAGAAGAAGACTCAAGATAAAATTAAGGATCTGTTGGCCAACGGTGTCGTGGACAGCCTGAGCAGGCTGGTGCTGGTTAATGCCATGTACTTCAAAAGTGACTGGAACAGGCAGTTTCAGCAGCGTGACACACAGGATGCTGAGTTTAGACTCAACAAGAATGACACCAAGCCGGTGAAGATGATGCACCAGAAATCATGgttcccttttttcaacaagcCTAAAGCCAACTGCAAGAATGACACCAAGCCGGTGAAGATGATGTACCAGAAATCATGGTTCCCTTTCTTCAACAATCCTAAAGCCAACTGCAAGATCCTAGAGATGCCTTACAAAGGGGAGGAGCTCAGCATGCTCATCTTTTTACCCAATGAGATGGAGGACAGTACAACAGGTCTGGAGaagCTGGAGAAGCAGCTGACCTATGAGAACTTTATGGAGTGGACTCGTCCAGACATGATGAATAATGTTGAGGTCCAGGTGGGGCTGCCTCGGTTCAAGATGGAGGAGACGTATGACATGGAGGAAGTCCTGGTCAGCATGGGCATGGTGGATGCCTTTGACGGAGCAAAGAGTGACTTCTCTGGCATGTCTCCTGCCAACGACCTGGAACTGTCAAAAGTCGTCCACAAGGCTTTTGTGGAGGTCAACGAGGAGGGAACTGAGGCTGCCGCTGTCACTGCTCCTATCGTGATATTGGGCTGTTGTATCTCGCCCCTGCCCCATCCACCCGTCATGTTCATCGCAGACCATCCCTTCATCTTCTTCATCCGACATAACTCCTCCATGAGCATTCTCTTTGCTGGCCGATACTGCTCCCCTGAGTGAGCAATACATCGTTTAGAGTAGTGTTTCTCAACTGGAGGAGGTGGTTACAATACATCTAGTATTGGAACAGTGTACCATTTTATTTGGTATAACTTCAAAAATGTTAAGAATTACCACTCTAGAGTTTCCTAAAGCTAATCACAGCCTGAGTTCCTGTCACCAGAATGATGAGCAAAAACTGAGGTGTTGAATGTTCTTAACTGTGACTACTTGTTTGCATCATTTCTTATATGAAGGAGGGAATGATTCTGTGTTCATCCTTAACATTATGTTCTTGCACTGTTCTTTGTATCTTTTGCCCTTAATCTCAATCTCATCCTTAGGATCTTGTTTACTTTATGTCCTTGTTAATTATTGGAATTGTAATCAACAAAGTACAGTTATTTGTTATTGTACCATGCATGTAATGAATATAGACTATAAAGATAAAGAGTTTATATGAAGGTTTGA

Function

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295624 lncRNA upstream 71741 8464818 ~ 8465084 (+) True G218425
TU295621 lncRNA upstream 105887 8430438 ~ 8430938 (+) True G218422
TU295620 lncRNA upstream 118740 8408500 ~ 8418085 (+) True G218421
TU295619 lncRNA upstream 135746 8398919 ~ 8401079 (+) True G218420
XR_005637994.1 lncRNA upstream 224225 8304796 ~ 8312600 (+) True LOC120552410
TU295668 lncRNA downstream 73025 8621500 ~ 8621720 (+) True G218449
TU295763 lncRNA downstream 85625 8634100 ~ 8634648 (+) True G218521
TU295770 lncRNA downstream 113131 8661606 ~ 8661968 (+) True G218528
XR_005637956.1 lncRNA downstream 164828 8713303 ~ 8720985 (+) False LOC120552042
TU295773 lncRNA downstream 164871 8713346 ~ 8721068 (+) True LOC120552042
XM_039790147.1 mRNA upstream 1535 8523269 ~ 8535290 (+) True LOC120552263
XM_039790148.1 mRNA upstream 2304 8523269 ~ 8534521 (+) False LOC120552263
XM_039790143.1 mRNA upstream 15119 8507749 ~ 8521706 (+) True ccdc135
XM_039790145.1 mRNA upstream 15119 8507783 ~ 8521706 (+) False ccdc135
XM_039790146.1 mRNA upstream 15119 8508804 ~ 8521706 (+) False ccdc135
XM_039790158.1 mRNA downstream 14173 8562648 ~ 8572731 (+) True LOC120552267
XM_039790156.1 mRNA downstream 30525 8579000 ~ 8596356 (+) False LOC120552265
XM_039790151.1 mRNA downstream 35544 8584019 ~ 8596356 (+) True LOC120552265
XM_039790154.1 mRNA downstream 38548 8587023 ~ 8596356 (+) False LOC120552265
XM_039790153.1 mRNA downstream 38558 8587033 ~ 8596356 (+) False LOC120552265
TU295439 other upstream 1163484 7367511 ~ 7373341 (+) False LOC120552660
TU295442 other upstream 1163484 7367511 ~ 7373341 (+) False LOC120552660
unassigned_transcript_1408 other upstream 1247524 7289230 ~ 7289301 (+) True trnaw-cca_31
unassigned_transcript_1407 other upstream 1255048 7281706 ~ 7281777 (+) True trnaw-cca_30
unassigned_transcript_1406 other upstream 2945742 5591002 ~ 5591083 (+) True trnas-gcu_66
TU295651 other downstream 1395 8549870 ~ 8581127 (+) False LOC120552265
TU295657 other downstream 2308 8550783 ~ 8606578 (+) False G218441
TU295664 other downstream 7741 8556216 ~ 8557253 (+) True G218445
TU295656 other downstream 52485 8600960 ~ 8606578 (+) True G218441
TU295658 other downstream 52485 8600960 ~ 8605823 (+) False G218441

Expression Profile