RNA id: XM_039790158.1


Basic Information

Item Value
RNA id XM_039790158.1
length 2607
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC120552267
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8562648 ~ 8572731 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAACCTCTTTTTCCACAACACtaaacttagctagctagctacggtCTTGTTTTTCTGGTCGGCTGTCATGCTAATTATGAATCTTGAACTTGTCCTTtagtttgaaaaataaaaacaaacagGTcacagaatgggaaagaaagttAAGAAGGAGAGCGAAACTCCATGCAAGGAAACGTTTGAGCCACTACCTGTTGAGGCCAAAACTCCAGCAACAGTAGTGCTGCTGCTGAGCTGCCCAGAGGAGGACATCCTAGTCAAAGCCTGTGAAGCAATCCACAAATTTGCAGAGAAAGGAGATGAGAACAAGGTTTCTCTGCTGGGACTCGGGGCATTGGAGCCTCTCTGTCAGCTCAtcactcacaacaacaagcTGATCAGACGCAATGCTTTCATGGCCTTGGGCACAATGCTATTGCAAGGTGATATAAAGAGTGCTCTGAAAAAAATAGATGTCATTCCATCAATCATTGACAAACTGTCACTTGAAGAAGATATAGTTGTCCATGAGTTTGCAACACTGTGCCTGGCCTCTCTGTCAGTGGATTTTGTCTGTAAGGTCAAGATCTCTGACAACAAGGGCCTGCCACCTCTAATCCAGCTCTTATCCAGTCCAGACCCCGATGTCAAGAAGAACTCCCTAGAGATCATCTTTAACCTGGTTCAGGACCACCAAAGTCGTCTGGCATTACATGAGCTGGGAGGGATCCCTCCACTTCTGGAACAGTTGAAGTCCGACTTCCCTGTCATTCAGCATTTGGCTTTAAAAACGCTACAGAATGTCACCACTGATACAGATACATGCAACACCTTCAGGGAAGAGCAAGGATTTGAGAAGCTCATGGATATCCTCAGTAACATgGACTTCCGTGACCTTCATGCTGAGGCCTTACAGGTAGTTGCTAATTGTTTAAGTGACAGTAAGAGTTTACAGCTAATCCACAAGGGTGGAGGACTGACGAGGCTGATGGAGTCTGTTCTCACCCCCAATTTACCTGAAATCCAGTCCAACGCTGTTAAATGCATCGCCAGGGTTGCTCAGAGCTccGAGAATCGTAAACTGCTCCATGAGCAGAATGTGGAGAAGGTTCTGGTAGAGCTTCTGTCTGTGGCGGACATCAGCGTGAAAACAGCTACCTGCCAGGCTGTGTCAGTCATGAGCTTCCACCTAGCCAGCAAAGACAGCTTCAGAGACCTGGATGGTATCCCAGCAGTTGTACAGTTGCTGAACAATGAGAGTTTGGAGCTAAAAGAGGCAGCAACCCAGGCCCTCTCCAACCTCACACATAGCAACCAGTTAAATGCATTCGCAGTGTATGAGGCAGGAGGCGATGAGATTCTTGTCCAGCAGCTGTATGGAAGCTGTCGCAGGACGGTGGCAAATTCTGCTGCCACGCTTGGCAACATGGCAGGACAGGAGGTCATCCGCTGCAGTATCTTGTCACATGGAGCTATACAGGCTCTGGTGAAGCCCTTACAGTCTACAGATACACAGGTTCTGATCAACACCACGCTGTGCCTGACGGTGCTGGCCTGTGATACAGAAGCTAGGGCAGAgCTACAAAATGCTGGAGGCCTTCACCCACTGGTCAATTTGCTGCGCTCCTATCACAAGGAGGTGTTGCACCATACATGCTTGGCTATCAATGTCTGTGCCAGTGATGTGAACACCGCTGCGGAGATGTGCCAATTTGGAGCCCTGGAAATGCTTCAGGAAATCAACCTATCAGTGAATCGAAGGAGCCGTTTCAGCGAGTTGGCCATGATCAGCCTGCTTAACTTTAACTTGTCTGTTAAATACAGCCTGACAAGTCACTTGGCCTCCACTGACATTATTAGTGATGGCTTCTATGATGttggaaaggcTTGTGCTGGTCAAAGGATTCAGACTTTAGAGGAACTGTCCAAGCAGCCTGTCAACGAGCACCGGCAAATCATTGTTGTCAACACAGCCACAGGAAAGAACAAAAAGGATGATAAACAGAAAAATGAGACCCAGCCTGAGTCTCCTACAGAGAAACCGTGGAAGATGATGGATGACGTCTCATTGCAGCTTCTAGTTAACAAGGCCAAAAATGTCATCCTCCCACTGAGTGATGAACGAGAGCAGTGTGCTGCCTTGGCCAGgctggtgagtgaagccaTGGGCGGAGCAGTAGAGATGGAAAAGTTGCATGAATTCCCATGGGTGCTGCACCTCAGCGAGCTCAAGTTTCAGCTTCGGTCTAATGTTGTTCCCATCGGTTTGATCAGCAGGGGAATCTATTGCCACAGGGCACTTCTCTTCAAGTGTCTGGCTGATTGCATTGGAATGAGCTGCACACTTGATAGGGGTGAGTACAGCCGGGCTTGGAACGAGGTACTCCTCTTCAATGGGAATCCCTCCATGAATGAGCGCTCCTCACAGCCCTGCCGCTACATAGTAGACCTCATGCACCAGCCTGGAAGGCTGCTGACAGCCAATACCCCTGCGGCTGTGCAATACCAGACTATCTAGACCAACACTGTAGTGTAGAAATACTGCAGTACATAATGCTGTGACTGGACATTTTACTTGGATGCATTATAGATATTGATTTATATTGTGTATTTGCTGTATGGCAGA

Function

GO: NA

KEGG:

id description
K24124 ARMC3; armadillo repeat-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295624 lncRNA upstream 97564 8464818 ~ 8465084 (+) True G218425
TU295621 lncRNA upstream 131710 8430438 ~ 8430938 (+) True G218422
TU295620 lncRNA upstream 144563 8408500 ~ 8418085 (+) True G218421
TU295619 lncRNA upstream 161569 8398919 ~ 8401079 (+) True G218420
XR_005637994.1 lncRNA upstream 250048 8304796 ~ 8312600 (+) True LOC120552410
TU295668 lncRNA downstream 48769 8621500 ~ 8621720 (+) True G218449
TU295763 lncRNA downstream 61369 8634100 ~ 8634648 (+) True G218521
TU295770 lncRNA downstream 88875 8661606 ~ 8661968 (+) True G218528
XR_005637956.1 lncRNA downstream 140572 8713303 ~ 8720985 (+) False LOC120552042
TU295773 lncRNA downstream 140615 8713346 ~ 8721068 (+) True LOC120552042
XM_039790150.1 mRNA upstream 14173 8536825 ~ 8548475 (+) False LOC120552264
XM_039790149.1 mRNA upstream 14175 8523276 ~ 8548473 (+) True LOC120552264
XM_039790147.1 mRNA upstream 27358 8523269 ~ 8535290 (+) True LOC120552263
XM_039790148.1 mRNA upstream 28127 8523269 ~ 8534521 (+) False LOC120552263
XM_039790143.1 mRNA upstream 40942 8507749 ~ 8521706 (+) True ccdc135
XM_039790156.1 mRNA downstream 6269 8579000 ~ 8596356 (+) False LOC120552265
XM_039790151.1 mRNA downstream 11288 8584019 ~ 8596356 (+) True LOC120552265
XM_039790154.1 mRNA downstream 14292 8587023 ~ 8596356 (+) False LOC120552265
XM_039790153.1 mRNA downstream 14302 8587033 ~ 8596356 (+) False LOC120552265
XM_039790155.1 mRNA downstream 14553 8587284 ~ 8596356 (+) False LOC120552265
TU295664 other upstream 5395 8556216 ~ 8557253 (+) True G218445
TU295439 other upstream 1189307 7367511 ~ 7373341 (+) False LOC120552660
TU295442 other upstream 1189307 7367511 ~ 7373341 (+) False LOC120552660
unassigned_transcript_1408 other upstream 1273347 7289230 ~ 7289301 (+) True trnaw-cca_31
unassigned_transcript_1407 other upstream 1280871 7281706 ~ 7281777 (+) True trnaw-cca_30
TU295656 other downstream 28229 8600960 ~ 8606578 (+) True G218441
TU295658 other downstream 28229 8600960 ~ 8605823 (+) False G218441
XR_005638067.1 other downstream 165844 8738575 ~ 8738642 (+) True LOC120552752
XR_005638015.1 other downstream 639187 9211918 ~ 9230163 (+) False rnpc3
TU295977 other downstream 804213 9376944 ~ 9378147 (+) True G218694

Expression Profile