RNA id: XM_039790163.1


Basic Information

Item Value
RNA id XM_039790163.1
length 3298
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC120552272
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21706905 ~ 21711616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agctaacgtcagctaacgcTAAAAAAGGACTGTGTGATTTGTTTGACAACACGCTGCCGGCTAGTTGCTAGGCAACTGGAGGAGCAAATGTTGCATTTCAGGACTTTAGTAAAGCAATATCCGAGCAGTCCTTATGTAAAGTTCACGGACTGTTTCTTGGTTTAGAGCACCCACTGTTCCATAACAACTCGTATTATGCAGTATATAACGTTAGCATTTCTATTTTCACATGAATGTGAGTCGTACTTTAGAATTCGGAACACTAAAGTACAACGTTCCGAGAATAATTTGAATGTAGCACTAAGGTCACTCGTGTTAGCCATACCGCGAGGCAAACAATTTGGGGGTGATGATGAAAAGATTCGCTCTTATACATCGTTAAATTTGTAAGCCTGTGGTTTGTATTGCATACGAAATCAAACTTGGAAAAcacgtgtgtttgtttttgcaacGGGATATCGGAGAAAAGGCTGCTGTCATTTGCTGTCCCCTCAATGGGTTTACTGAATGCATTAAGAACTGTCAGATGCTACCTGAGCCCCTTTCCAACATCCAAATCATGGTTCTCCACCAAAGCCTCCCTGCTGGGGGACAAGAACATCTTGCTCATGGGTCCTCCTGGAGCAGGGAAGACCACAGTGGGGAGGATAGTGGCCCACAGACTAGGGCTACCTGTCATTGACGTTGATGACGATGTCTTGGAGACGACGTGGAAGATGCCCGTGGCTGCCAAGCTGGCAGCAGTTGGCGGAGAGCGTTTCCTGGAGGAAGAAGGCCAGGCTTTGTGTAACTTCTCCGCCTCAGGGTGTGTTGTTTCCCTGACAGGCTCTAACCCTCTTCACGCTGCAGCGATGCAACACGTCAAAGAGTCCGGACTGGTCATCTACTTGGATGTGGACGGTGAAGACATCATACGAAGACTCGCCAGGATGAAGGTGAACAGGATCGTGGGCCAGGAGGCAGAGGCATCCATGAGCGACATTCTGCGTTACAGGAAACCGTTTTATGAGAAATGGCTTGACGTGCGGGTGCTGTGTGGAAGAGGGGACACGGTGGAGGAAGTCGCGGAGAAGGTGCTGAAAGCTGTGGAGAGATATCAGAACCACGCTGCAGAAACCTATGTGTCAACCAGGAGTGACAGTGTGGCATCGTCCAAACAGAAAACCTACTTTAGTGATGTTGTGGTTGAGGGCCTGGCCACAAATGGAGGCCTCTACGTTCCCAGGAATGGCTTCCCAAACATTGGTGCTCGTGAATGGTTGAGACTAGCCGACATGTCGTACCCAGAACGAGCATTAGCTTTACTTGAAAAGTGCATACACCCATTGGATATCTCTGCTTTGGATCTCAGAACAATGGTATTCAAGGCATACGGGTCTAACTTTTCTAGTGAGGCAGTAGCACCTGTAAAACATCTCATCCGCAATCAGTATGTTCAGGAGCTCTTCCACGGCCCCACCGCCTCATTTAAAGACCTCGCCTTGCAGCTGATGCCCCAGCTCTTCGCCTACTGCCTCCCACAGATGTGCAACTACCTCGTTCTCGTAGCTACCTCTGGGGACACGGGAAGTGCAGTGCTCAGTGGGTTCAGCAGCCTCCGTGGCACCGACGTACACAGGACCGGGGTGCTGGTGTTTTTCCCGGAGGAAGGCGTGAGTGAGATTCAGAAGCTTCAGATGACGAGCTACAGGGAGGGCAACGCCAGGGCGATCGGCGTCCTGTCAGACTTTGACTTCTGTCAGAGAACCATAAAGAGGATGTTTGGGGAGTGCGGGCTGACCGGGCACCTCGCTGTAGAGTACAGCACAGTCCTCAGCACCGCCAACTCCATCAACTGGGCGCGGCTGTTGCCACAGGTGGTTTACCATTCTTCAGCTTATCTGGATCTAATCAGAGACGGTGTTATCAAGTTCGGTGAGCCCATTGATGTTTGCATCCCTTCTGGTAACTTTGGCAATGCCATGTCAGCAGTGTACGCCAAGCAAATGGGCATCCCAATAAGAAAAGTAATCTGCGCGTCCAACCACAACCGCATCATCACGGACTTTATCACCACAGGCGAGTATGATCTCCGGGGACGGCCTCTGATGCTCTCCCACTCCCCGGCTATAGATATCCTGAAATCCTCCAACCTTGAGAGGTTTATCTACCACGTCTCAAACGGAGACGGCCGTCTTGTCAAGGAGCTGTTCACACGCTTAGACAGACAGCAGCACTTTCAGGTTCCTGAGCCTCTTCTTGGCAGGATGCGGCAGGACGTGACGGCCGGCTGGTGCTCGGAAGACGACTGCTTGGCCGCCATCCAGAGCGTTCACACACAGGCGGGCTACctcatggacacacacaccgctgTTGCTAAAGTGGTGGCTGATAGGCTGCAGGACGGTTCGTGCCCCGTGGTGCTTTGTTCCACCGCTCACTACGGGAAATTTGCTCCCGCTGTGTTCAAAGCCTTACAAATCCCAAATGTTCCTGAGGATCCCCTTGAGCAGCTGAAGAAGCTCGGATCGACTGCATCCAGACCTGAAATACACAGAGACATGATGAAATGCCTGGAGACAAGGGGCAGGAGGGAACACACCGTTTGTCAGGCTGAGTACAGTGTGTTGGTAGAAGAGGTGGAGAGCATGATACACGACTCCTTCTTGAAAGTTATGTAGGATTATTTTAGCGTTTGTTAATGTCCACCTCAACTTAACGTTTTCAACTTTTAAGTTTAAATCGGAATTCATCATTTACCAAAAAGTCTATTTTTCATATGTCCTGTTTGTATCATGTGCTCTTCATTCTTTCAATGTATTTGTAACGTTTTAAAGCACGtttaacaaataaaaggaaaaaaggtaAAATCTTGCTAAAGAAAGAAatttaaacagaaaataaatcaataacataaaattcaataaaatgttaGGCATGGTCATGAAATTGATTTTAAAGACATCATTTAAAAGGCCAAATCCTGCCTGAGCATGCAGGCTTGAGTAAATGAACATGTAAACTCTGATTATACTATAATAGAGGCAGAAACTCAATGTAAATCCTGTTGAGGCTATTGCTTATCTAACACTTCTTTACATCATTATCCAGAGCCCTGGGGATGTCTACCTCTTGGCCACTGCTGGAATCACTGGTGCAAGCATTGCACTAACAGTATGGTATCACTGTAGGGGGAATTAATGACTATGGCTAAGTCCAGGAGGTCAAATAAACAGTtacttagttagttagttagttagttagttagttagttagttagttagttagttatgttttatttctgtcatgccaaacattt

Function

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299875 lncRNA downstream 288898 21415951 ~ 21418007 (-) True G221616
TU299861 lncRNA downstream 334214 21345698 ~ 21372691 (-) False G221604
TU299860 lncRNA downstream 334214 21364801 ~ 21372691 (-) True G221604
TU299823 lncRNA downstream 386495 21319890 ~ 21320410 (-) True G221582
TU299807 lncRNA downstream 404858 21301484 ~ 21302047 (-) True G221567
TU299960 lncRNA upstream 19671 21731287 ~ 21731487 (-) True G221695
TU299984 lncRNA upstream 102880 21814496 ~ 21815723 (-) True G221708
TU299991 lncRNA upstream 120540 21832156 ~ 21832884 (-) True G221712
TU300069 lncRNA upstream 232754 21944370 ~ 21944690 (-) True G221768
TU300100 lncRNA upstream 379925 22091541 ~ 22091753 (-) True G221793
XM_039789470.1 mRNA downstream 6862 21693431 ~ 21700043 (-) True ptchd3a
XM_039790419.1 mRNA downstream 16971 21604715 ~ 21689934 (-) False gpr158a
XM_039790418.1 mRNA downstream 16971 21604715 ~ 21689934 (-) True gpr158a
XM_039790301.1 mRNA downstream 108149 21590944 ~ 21598756 (-) True LOC120552336
XM_039790300.1 mRNA downstream 119752 21575606 ~ 21587153 (-) False anxa13
XM_039790164.1 mRNA upstream 4931 21716547 ~ 21719505 (-) True LOC120552274
XM_039790878.1 mRNA upstream 164548 21876164 ~ 21917655 (-) True tmtopsb
XM_039790877.1 mRNA upstream 164548 21876164 ~ 21916040 (-) False tmtopsb
XM_039789694.1 mRNA upstream 242029 21953645 ~ 21991347 (-) True tnk2a
XM_039789696.1 mRNA upstream 242029 21953645 ~ 21988802 (-) False tnk2a
TU299660 other downstream 844240 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 2380011 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 2757424 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 3075430 18610236 ~ 18631475 (-) True G220833
XR_005637957.1 other upstream 278401 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 491167 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 491167 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 3251829 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 3344977 25056593 ~ 25086708 (-) False LOC120552232

Expression Profile