RNA id: XM_039790198.1


Basic Information

Item Value
RNA id XM_039790198.1
length 986
RNA type mRNA
GC content 0.59
exon number 2
gene id rnf152
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 24660111 ~ 24723840 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATTGTGTGGAGTCTGGCCGACGGGAGCATTGAGGAAACACAACAAAGTTGTTTCCGATGCGAGGagattttgctttgtttggcCGTGAAAGATGGATGACCATGTTGCCACCAAAgagctgtgacatcactgtgaaGCCGTGGATGTTGGTGGACGGCGTGCTGTCTTAACTTCCCCTTGGAGTTGTGCAGCCTTTCTCCGAGACCCGTTTGACGCACCTCATCTTAAATAACTGCTGTTGTCTGCTAATATAATTAGGGACCACCTATcctatctttaaaaaaaaaaaaaaaaaaaatggagactCTTTCCCAAGATTCCATTCTGGAGTGCCAGATCTGCTTTAACTACTACAGCCCTCGCCGGCGGCCCAAACTCCTGGATTGCCGACACACGTGCTGCTCGGTGTGTTTGACCCAGATGCGCAGCAGCCAGAAGGAGATTCGTTGCCCCTGGTGCCGTGGCGTCACCAAGCTCCCGCCGGGCCTGTCCGTCTCCCAGCTCCCGGATGACCCGGACATCATCACTGTCATCGCCATCCCTCACGCCTCTGAGCACACGCCCGTCTTCATCCGCCTCCCCAGCAACGGCTGCTACATGCTGCCGCTGCCCATCGCCAAAGAGCGGGCGTTAGGCCTGCCGGGGGAGCTGGGATGTCGTTTCCTGCCCGGCGGCCAGCAGAAGGGGGTGACGGTGGTGACCGTGCCCGAGCAGCAGCCTCTGGGCTTGGCTATGGGTCTGGAGGGTGTCGGGGTGGGGCTGGAGGGAGGCGAGGGCGAGAGGAGAGTTACTGGCCCGGTGGGAGGAGGGAAGGGCTCCACGTGGTCCGGCGTGTGCACAGTGATCCTGGTGGCGTGCGTGCTGCTCTTCCTCCTGGGCATCGTGCTGCACAACATGTCCTGCATCTCCAAACGTTTCACTGTCATCTCCTGCGGCTGAGGGCGGGAGGAGGCACCTCGGACTGCTGCGggccccccccacaccc

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300416 lncRNA downstream 50432 24609461 ~ 24609679 (-) True G222062
TU300393 lncRNA downstream 467311 24189134 ~ 24192800 (-) True G222041
TU300389 lncRNA downstream 482124 24177740 ~ 24177987 (-) True G222039
TU300388 lncRNA downstream 491562 24168312 ~ 24168549 (-) True G222038
TU300387 lncRNA downstream 507349 24152479 ~ 24152762 (-) True G222037
TU300456 lncRNA upstream 71317 24794866 ~ 24795350 (-) True G222088
TU300458 lncRNA upstream 73263 24796812 ~ 24797616 (-) False avl9
TU301971 lncRNA upstream 171023 24894572 ~ 24898219 (-) True LOC120552180
XR_005637972.1 lncRNA upstream 171469 24895018 ~ 24904700 (-) False LOC120552180
XR_005637971.1 lncRNA upstream 204775 24928324 ~ 24954497 (-) True LOC120552179
XM_039789569.1 mRNA downstream 298895 24357609 ~ 24361216 (-) True mc4r
XM_039789682.1 mRNA downstream 362260 24193378 ~ 24297851 (-) True drosha
XM_039789683.1 mRNA downstream 362261 24193378 ~ 24297850 (-) False drosha
XM_039790263.1 mRNA downstream 993254 23633683 ~ 23666857 (-) True cdh10a
XM_039790261.1 mRNA downstream 1208073 23401543 ~ 23452038 (-) False LOC120552322
XM_039790199.1 mRNA upstream 41112 24764661 ~ 24770211 (-) True LOC120552289
XM_039790218.1 mRNA upstream 48357 24771906 ~ 24777805 (-) False LOC120552302
XM_039790220.1 mRNA upstream 48357 24771906 ~ 24777792 (-) False LOC120552302
XM_039790219.1 mRNA upstream 48357 24771906 ~ 24777792 (-) True LOC120552302
XM_039790308.1 mRNA upstream 73040 24796589 ~ 24854888 (-) True avl9
TU300141 other downstream 2441745 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 2442562 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 2651023 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 3797446 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 5333217 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 239896 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 333044 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 832924 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 1007207 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 1104542 25828091 ~ 25834224 (-) False mynn

Expression Profile