RNA id: XM_039790199.1


Basic Information

Item Value
RNA id XM_039790199.1
length 2958
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC120552289
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 24764661 ~ 24770211 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTGTCACCTGGAACCAAAATCTAGCCAATCAGTGCAGCATTTGACAAGCTTGCCTGTAGCATGAGTCCACACCTTTGATTTCCAATTTAAAACCTACCTTGAAAGCTGTGTTGGTTTCTCAGTTTGGTTAGCTTCTTTTTGTACTTGCCCAGTAAGTGTTTTTTGTCAGAAAATATACTGAAACAATCTATCTTGCAACAAATTTGCCAACAAAGAAGGAAACAGttcaaacatttatttgaacTTGAACTGTTTGTCAGATATGGCGGCAGCCACATCTACCTTCCAACATTCTTTCGGTCTGGGCCCTCGGGGTCCAAACCCACCATACGGAGCTCAGCAGGCTCCAGGGCCTTCAGGAGCTTCACGTCCTGAGGAGCAGCACCACAAACCTTTCTTCTATATACAGCCCTCGCAGCCATACATGCCCATGCAAAGTATGCAGTGGCCTGTGCCAGTACCCATGCCTGTATCCTACAACCCATACGCCTACCCTGGTTTAGGTTATGGCATGCCAATGATGCCCCACTATCAGCCAAATCCATACATGGAGCCACCTGGCTTTGTCGTACCCCATACCCACCTCCATTTAATGGACTACAGACGCATGCTCAACCCTCAGTATTACCAGACCATGGCCTACCAGTCCCGCAGGTTCCGCTACCAACACCACAGCCAGACCAGAGAAACTACCAGCTCTGAGGTTCAAACCGAGCCGCTGCCTGCAACCCAGAGGACGAGCACTCCAGGTTCCAGTGACTGCGAGGCCCCCAGTGGTGTCCCAGTTtgcagcagtgacgacagcccCAGTGCCCCCTTCAATCAGCCACTCCTGCCAGCTTTGGCTGTGCAGACGGGGGATCATTCTCTGGAACTAAAGGACATGGCACCCTCGTCCACCACCAGGACGGCTGCAAATGGCGGCTTTGTGATTCAGACAGAGGAAGTGAGGATTGAATGCTGCACCACACCAGTGGGACTGCAACTCCTGCACTCTCATGAGACTGCAGAAGTATCTCACAGCTTTTCCCAAGATGGTGTCCAGTGCAGTAGCTCCGTCCTCCAGGGTCACATGCTGCAGGACGAGGGATTGTGCCTTCCTGCAGACAAGTCAGAGCAGGCACTCCAATCTTGTCCTGACATTCTGTTAGTTGGGATGCCCAGCAGCGGTGAGAAGATCTCTGCTCTGGAGGAGTCCAGGAACCAGACGGATTCTGTGACTGTCACTTCCAACTTGGGTTCCCGACTAGCAGCTTATTGTGACGATGAGATGAGCTGTGAGAAAGATCTAAACACGACATCGAACTTTAAAGTCGTTCACTTGCCCTTTGACCCTGAGTACCTGGATGAGCTGTGGAAGATGGAGTCCACTGTCTGGTCAATGGAGGAAACCTTGATTCCCTCCCCTGAATCGCTGATCCTAAATGGCCGCACAGAGTATCATAATGAATCTCTGGCTGGTGTAGCTGGAGTGCCCTCAGCAGATGTgctgatggagagagaggaggttCCTACAGAAGAGTTTCTTCCCATGACTGAGATGCCTTCTCTGGCACAGGATGAACAGAAGGACATGGTCCCCACTGGGGAGAAGGGTCCTGGGGATGAGATTGTGTCTGAAGCTGTTGTCTGCCCTGTGACAGATGTTCCAGTTGCAGAGAAAACTCCAATGACCGAGTTGACCCACGAAGCAGAGGTGGCTCTTGCACCTAATTTGCCGGTGTTGGATAATTCCCCTCCAAAGGCAAATGGGAACCAACATAGACGAGAAACGGATGTCCAGCATCAACAGGACACTTCATTCGAATCATTGCCCACCTACCTCCCCTCAACCAGCTGGATGGCTGACTTTGATAATGTCCACTATTGTAATAAGATGCCCCCAACTCCCAAAAAGCAGAACAGACCTCTCAGCAGCTGTGGGTTAGATGTGCATACAAGGAGAAGAAAACTAGAACTAGAGTACAAAGAACAACATACCGTTCGCAAGCCAAAAGAGAGGTACAAACACAAAGGGAAGGTGGATCGGCGAAGCCTCTCTGACCACGAATGCTGCCTTAACAGAAATTTCAATGAGAATGCATTTACTTATGCGTCCAAGAGGGAGAGACTTTGCTCCAGATGTGTGGCGAAGAGCAGCGTTTGCACGTCTGCCAGTCCAGGACCCGATGGTCGCACCTTAAAAAGAAAAGCTGCTCTTGTCCAACAGTGGAATGACTCCCTCTTACCAACATGTGAAGCCTGTAAGTCTCACTCCAAGAAACGACTGATGAGGAAAGGTTCCGGCCCTGATGTCTGTGGGCCTCATCATGGACACGACACAGAGGGAGAATCTTCTGAGAACGGCTCATGTCACCTTGGCTCAAAATGGAGGGCAGTTGATAATCCCAGGAAGCTCAACAGTCTCAAGAGGCCACTGGCCTCGAAGcaaaacgttgaaaaatgtCCTGCAGCGATGTACCCAAAGCTGAGGGAAAAGAACTGTGTGTGTAATGAGCCGCAGCTTCAGTCTGTTGGATGGGAGAGGCTGCGGCACTGTCCCCACGGCAACGCCATCCGAGAGATGGATGAGAACTGCGCCATGCCGGTTTCCCTCCAGGACAAATGGAGGATAATGGATCAGATTTACCTGACACACAGGTGGCAAACTGGAGGGAAGTCGCGGAAAGCAGTGATGCCTAACCCGGACGGTGACGGCTTCAAGAATGAAGCCAGATCAACACATTTTAATCACAAGAAATCACAACCACAATCACAAGGAACTCGAAGAAATGACACAAGATGCTGATTTTGCACAAGAGCACAATTCTACAAAGTGAAAACTGCACTTTTTTAAGAAACTTTGATGTACACTTAATTTAACCTATTTCCACCTAAATGTAATGTGTAAATGTATTGTATAATAAATCACAATGTTCACTATttattaacattaaaataaacacCAATTTATGATa

Function

GO: NA

KEGG:

id description
ko04115 p53 signaling pathway
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300416 lncRNA downstream 154982 24609461 ~ 24609679 (-) True G222062
TU300393 lncRNA downstream 571861 24189134 ~ 24192800 (-) True G222041
TU300389 lncRNA downstream 586674 24177740 ~ 24177987 (-) True G222039
TU300388 lncRNA downstream 596112 24168312 ~ 24168549 (-) True G222038
TU300387 lncRNA downstream 611899 24152479 ~ 24152762 (-) True G222037
TU300456 lncRNA upstream 24655 24794866 ~ 24795350 (-) True G222088
TU300458 lncRNA upstream 26601 24796812 ~ 24797616 (-) False avl9
TU301971 lncRNA upstream 124361 24894572 ~ 24898219 (-) True LOC120552180
XR_005637972.1 lncRNA upstream 124807 24895018 ~ 24904700 (-) False LOC120552180
XR_005637971.1 lncRNA upstream 158113 24928324 ~ 24954497 (-) True LOC120552179
XM_039790194.1 mRNA downstream 40821 24660111 ~ 24723840 (-) False rnf152
XM_039790196.1 mRNA downstream 40821 24660111 ~ 24723840 (-) True rnf152
XM_039790198.1 mRNA downstream 41112 24660111 ~ 24723549 (-) False rnf152
XM_039790197.1 mRNA downstream 48776 24660111 ~ 24715885 (-) False rnf152
XM_039790195.1 mRNA downstream 88684 24660111 ~ 24675977 (-) False rnf152
XM_039790218.1 mRNA upstream 1695 24771906 ~ 24777805 (-) False LOC120552302
XM_039790220.1 mRNA upstream 1695 24771906 ~ 24777792 (-) False LOC120552302
XM_039790219.1 mRNA upstream 1695 24771906 ~ 24777792 (-) True LOC120552302
XM_039790308.1 mRNA upstream 26378 24796589 ~ 24854888 (-) True avl9
XM_039790848.1 mRNA upstream 92299 24862510 ~ 24869834 (-) True psme2
TU300141 other downstream 2546295 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 2547112 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 2755573 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 3901996 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 5437767 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 193234 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 286382 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 786262 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 960545 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 1057880 25828091 ~ 25834224 (-) False mynn

Expression Profile