RNA id: XM_039790211.1


Basic Information

Item Value
RNA id XM_039790211.1
length 3763
RNA type mRNA
GC content 0.51
exon number 11
gene id zgc:112982
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25505139 ~ 25527126 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCACAGCGCGGCGTCAACAGCCATTTTCTTGCAGATGTTAAAGACGAGCGCAGCGTATTTAGCTAGCGTTGGGTTATATCTTGTAATAAATAGGGCTTTATTGTAAAATTACAAACGGTTATATTGCAGGTTTTGTTTTGGTGTGGTTGTCATTGCTTCCGCTAACGTTAGTCGCGGTAGCCTGGCGCGTGTCGAGGACGAAGGTTGGCAAAATGTCAAGACCACGGCCCGGATCGCCAAGTTACAGGTTCCCATGGGAGGAACCAGACTTTGATCCTCATAAAGTCCTTGCAGAACTGGATGGGAATCCGTCGGACAGGAGCCACCGCCCTAGAGGAGATCCTGAAGAACACTGGGACTACTCCAGGGAAGACATGTACCCTGAAGGCCAGAGAAGATCCCCTCCTTTCCCAGATGACCATGAGTTTGTGCATCATCGCCACCCAAACCAAGAGGAATTTTATCGCAGAAGGCCACCATCGCCCCATCTTGATGTGATGGGCTTTGATGATGACCGCAGGCTTTCCCCGCTGCGTGATGGAGAAGTTGGGGGAGATAGACGCAGAGAAGGGTTTAAAGAACTCTTCCAGCGTTTTGAAAACAGAGCGAGGTTGCCCCAGTCGCCTCTGAGGATATCTAGGGAAAGATTGCCGCCGACACCGAAGTCTCACTCAGACCACCAGCAGAGAGAGGCGGGGATAGGCtggaagagagaggagcaggGCAGGGGTCGAGGGAGGTTCAGAGACCAAAGTCCCAATGCGAGGTTGGATGACCAAAGAGGGGGCACAGGTAgggaaagaggaaggaggagcaCACAGGGTCCTATTAGAGACAGACGAAGAGAGGATTCACATCACGAGAGGACCCCCCCCTTTAAAAGGCAAAGAAGACAAATGGATGACGCCATTCACCTTGGGTACAGGAATGAGGAGGACTTTGGGCAACCGCGTTACTCAGTGGACACACCCAGAGATAGGTTTGGAGGAGACACTCAGGGGAGCTTCCCCCGTGGAGACGTTCGCCGCTCGGGACCACTCGTCATTGAACACGATCATGGCATCACAGGCAGCAGAGAGCCGTCACGTTGGGAACAATTTGGCGATCGCGAAGACCTTGCGCCTGACTTTATTCGACAGAGGAGTCCTCGTCCAATGGGCTCCTCTCCGGAGCGTTTCAGGGCGTTGGACAGCAGGTTGGAGGATCGGGAAGACGCAAGAGGACGCCATTTTCAAGATAAATGGGGAGACTCCAACTATCATGAAACTAGGAGGAACTCTGCGCCTCAAGATAGACCAAACCCTGTGAGATATGGTAACCGGGATGGTCCTGTGAACCACAGGGGGAGGGGTGGTGTTCGCCCAGGGAGAGGGCAGTTCAATCGCAGCCAGGGTGGAAGGACTGGACCGCCCAGAAATCAACCACGCTTACAGCAGTCCTCCCAAGGATACCAAGATCTTCCTGAAGAAGAGCAAAGACCAGGGTACCGAGCCTTCAGGGAAGATTCTTACGAGGATCCAATCGAAGGGGAGCCTGACTGGGCAGAAGAAGACAGACTTCAACAGTGGGAACCTCAAAGGCCTGGAAGTTTGGACCGGCACCTACACAGGGATGACTTAGACCCTAAAATGCCCCGTCAGAGGGAGCGAGCATGGAACGATCAGAAGACCAACAACATGATGGTTGTAACGGAGGAAACGCTAACCATCAAAGTCGACATGAGCCGACCCGTAAACAAAAACAGCTCGCTGTGCTACTCCTCGGACAGGCAGCTCTCTTTAGACCTGGTCAACGTGGGTCGCCAGCGTCTGGACTTCCTGCCTATGCTGGAGCACTCCGGGACGTACCAGGAGAATGCCATGCACACTGGGACTTTTGCCCAGGAAATCATCACACTGGTGCACCAAGTCAAAGAGCAGTATTTCAGAAATGATGGGGTCACCCTGAATGAGCGATTCTCAGCGCCCCAACAAGGCGGCTACTCTGAAGCAGACACGGAGGAGCTGACGTTGGATGAGAGGTTCAGTTCAAACCGAGGCTTCAGCTTAAACATGAACTCGCTGCTTGACGACGACGAGCCTCTGTTCTCCAGACTAGGACCCTTGCAGCCGGTTCGAGACCCGGGGGACCTGAGGCACGACctggagaggaggagacaggagaggCTGGAGGGGGTGAAAGTCACAATATCGGGGAACAATATGTCACCGCGCCCCCTGGGTCCAATCAGCGCGCCGGGGTTAGCGTACAGGGAAAAGGATGAAATGTCTCAGATGGAGGACGAAGGATTCTCCAACTGGCCAGAGGAGCAAAGCAGGAGACGAGAGGGCAACATGGGACCAAGGAGAGGAGCTCCGTACAGGCTGAATGCTGCCTCCCAACGCAGGAACACACGCCCCGTCAACCAGCTCGGACCAATGAGGCGACCAAACAACCGCAACACCGCTGCAGTGTCTACAGGGACTCCGACTGAACCGGAGGAACCTGAGGGGACCTCTGTTCCTACACCGGTCCCAAACTCCCAGATATTGGTGGAACCAAAAGCGACCCCTGTCCCTGTGCCGACCCCTGACCCTCAGACACCAGAGGAATCAGCCTTCAGGATCTACCAGTATGGTCGAGTGGGGGAAAAACGCAAGAAAACTAAGGTTCACCCGCATGCAACTGGTGACCCGGATATGTGGAAGTATTTCACACACGTGAAACTGGGACGGTTCCGACACAAATGGACGGTAGAACCTTCCATGGAGAATCTGGATTACTTCGTCAAGAATTCCACTCATCTGAAGACGATGAATTCTGATTTCTCGAATGAGGACGGGGAATGCATTCCTGTTGATAAACATTGGCACGTGTTCAACGCAACCAGCAACACGTTCCTGATTCTGACGAACCGTAGTCAGGACCCCTTGGCAATAATTCTGGACTATAATAACATTTGAGCGCTGCTAGTTTTGTGTTTTAAAGGGAGGATGTTGAACGAATGTTCGattgaaaaccccaaaacaaagaaatagcagAATCCATATCATTCCTTGCTTTACAGCATATATAACGTTGTTGGCATTAACAGAATACCTATATAATTGCttagtgtgggtgtgtgttttgaaaacccccaaaaaaacataTGTCTTGCTTACATATTAATCTGTTTTTGCTTACATACTGATCTCTTTCTGCACTATATGACAAAGAAAGCTTTCATTGAGAATTGTAAGGAGTGGAGAACAGCCAGACAGAGATAAGAGAGTACAGGCAGAGAACAGAGACCTTGGTAGGGGCAcacatccctgtgtgtgtgtgtacatcctGAAACACATGTGCTGCtatacacatcacacatgctgTATGGCTCATTAAGTTTCCTTTTACTGTAAGTTGTCTGTGAGCATTTCTTACATTACCTTACAAGGACAAAAAAGTACATAAAGCACATCCCCCTTGGTAACTTTGGGAGGAGTAAATGTTTTTTCGTATATAAATATTAGTGTTTTTGCCAAGAAGcgctcttctcttcttcttcctggCGCCTTCTGCTGCATTGGGAAAGATTTATTTTTGCCTCTCACAGCCAGAGGGGTGGTCCCCTGCACTCACTGGGTGCAGtggagggaggaaagaaaaaagagaagcgGCTTTAAATTCCTCTGTTAAGCAGAGGCCCTATTTCTATTTTGTAAAggaccacttgcttttaatttctgcttttgtcacaaGATAATAAAACCACCTGAGCTCGGCTTGAGCTAGGGGACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302093 lncRNA downstream 115585 25347574 ~ 25393038 (-) False LOC120552443
XR_005638004.1 lncRNA downstream 120474 25382543 ~ 25388149 (-) True LOC120552442
TU302061 lncRNA downstream 123002 25316612 ~ 25385621 (-) True G223206
XR_005638000.1 lncRNA downstream 133122 25358648 ~ 25375501 (-) True LOC120552439
XR_005638006.1 lncRNA downstream 151653 25347787 ~ 25356970 (-) False LOC120552443
XR_005637983.1 lncRNA upstream 29460 25556586 ~ 25562436 (-) False LOC120552299
TU302157 lncRNA upstream 51173 25578299 ~ 25582204 (-) True G223265
TU302163 lncRNA upstream 77144 25604270 ~ 25604783 (-) True G223269
TU302169 lncRNA upstream 109328 25636454 ~ 25637238 (-) True G223270
TU302114 lncRNA upstream 131463 25658589 ~ 25717023 (-) False G223239
XM_039790885.1 mRNA downstream 19975 25466333 ~ 25488648 (-) True si:ch73-264p11.1
XM_039790460.1 mRNA downstream 47602 25439154 ~ 25461021 (-) True cip2a
XM_039790462.1 mRNA downstream 71481 25429238 ~ 25437142 (-) True chrnd
XM_039790458.1 mRNA downstream 81426 25414884 ~ 25427197 (-) False LOC120552403
XM_039790213.1 mRNA upstream 1106 25528232 ~ 25546104 (-) True map7d2b
XM_039790214.1 mRNA upstream 36760 25563886 ~ 25573965 (-) True eif1axb
XM_039790589.1 mRNA upstream 64354 25591480 ~ 25660731 (-) True rps6ka3b
XM_039790590.1 mRNA upstream 64354 25591480 ~ 25642514 (-) False rps6ka3b
XM_039790588.1 mRNA upstream 64354 25591480 ~ 25629415 (-) False rps6ka3b
TU302014 other downstream 421915 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 540633 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 3290257 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 3291074 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 3499535 21990017 ~ 22009088 (-) True tfr1b
TU302146 other upstream 29347 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 203630 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 300965 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 300965 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 456468 25983594 ~ 25993497 (-) False G223331

Expression Profile