RNA id: XM_039790219.1


Basic Information

Item Value
RNA id XM_039790219.1
length 2483
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC120552302
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 24771906 ~ 24777805 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTTTCCTATATGGCTAATTAGCGGAGAGGCTTCAGCGTTTGTAAGCAGAACGTCATGTGGACCGGAGAGTAAAAGCGTCTCTACTTCTGCTTGTTTGTCGAAAAATTTGACTGTAATATTCACCTTTAATTTTTCGAAGCCGGGggatgtttatttggttgttttCATCCCTCCGCGgtgttttattttctgacaGGTTGAGCAAGCACGGGAAAGAAAAATGGACGATGGAAgcaaacaaccacacacattTGGGAGCGGACAACCGAGAGCTCCACATCCCAGACCTTTCTTCTACGTCCAGCCTGCGTCTCAACCTTACCTCTACCAGCAGCAGCACTGGCAGATGAACAACCCATACAGTCACTATGGTGTGCCTGGAGGAGGTTTTAACCGTCCCTGCATGCCCCCGTACCAGTACATGCAATATCCTGGGTTTGTTTTCCCAAACCCATTGTTTGCCCCGTTATATCCAATGGATTACAGGCGGATGTTTGAGCCTCGCTTCCACGCTCCTCCCTGGAATGATATTcctcgccagcagcagcagcggcaacAGTATCACCCACAGACAAACTGGCGTCGAGAAATGGCATGCTCAGAGGCTCAAACCGACCCCAGTGACGCCATAACCAAACTCATAGAATGCCTGGATAAAATCCGAGCCACAGAGCTGCGGGGCGCTGACCGAGAGCTTGACTCGGGTGTCGCCTCACAGGCCTCGGAAACGTTTTTTCCAGGCGAAGAGAAGAAAAGCGAAGAGCAGGGTCACATCCTGCCATCAGCGCTTGGTGACAGCCACTCAGAGTCTCCAGCCACGACCTTCAGTGACTCCACAACCGCGGTGTACGACGGGGATTCCAGCCAAAGGAGCGTGGAAGTCCTGAGTCCTCCAGGATGCTGGTCAGCAGGATTAGAAGAGGAGTGTCCTCTGGATAGCTCCTCTGTTCATGAAGAGTGTCCTGAGCTGGAGCAGACGGCGACAGACGAACACTTACTCCCTCAGGAGAAAACAGAGGTCGCAGATATCCAGTCAAATATCTCAGCGACTGATGAAAGTGTTCCCAAACGTGACGTTGAAGAGCTCCTGAAGCAGCCGACGGATCCAATCCTGCCATCGTCTTCCTTCACCTCCAGTCAGCTGGCGCTCAAAGATGCCAAAAGTGGCGACACAGTCTCAAAGACGGAACATCAGAAAGCTGATCCAAGCTACCAGATCCTCAGGCTGCCTTTTGAGAGCGTTCTGACACCTGGAGAGGCTGGAGGCGCGTGCCTCTCCTCCCCTACTGCTCcctactactacaactacctATCCATGCAGACCACCCATGAGCGGATGAGCGTTCTCAGTCCATCTCTGGACGAGCTTTCCTCCCGAGATGAGATGTTCTCCACAGATCTGGACGATGCAGATCTTTTCCCCAAGCGCGTATATGCAGGCAGGAGGCTCGCAGAGGTGGTGAGCGGGTCTCCGCACGGTGCTGAAGAAGTGGAAGAAGTGTGGCTGCCAGGTTCAAAGAGGTGCATGTGCGCCTGCTGTGGGAAAAGCCTTGCAAAAGGGACCGGAAGGAGCAAAGTCCACAGCTCCAAGGTGTACAGGGATGAAGCCGGAGACTCTGAGGAGGAGAGCAGGTATGGGAGAGGGTGCGAGCAGCCCGTCAGAGTGGTGGTGAGGAAGCATTCTGCACCCAGGAAGCCCCATCCTATCCTGCCCAGACATGCTTCAAAACCTTGGTATAAAAGAGGCCAACACAAAGATCCCTCCGATCCAGTGAACCAGGAGGAAGGTCATGTTTGTATTCATGAGCCGGCTGATGGCGAGATTGGAGAGTTGACTTGTAGTGAGCCGCAGTGCAGAACATGTCAGGACAGACTCTGCAGAGAAGATCTAACCGCGTCAGACCAAGGCAGGTGGGGAGACCGGGACGTGATTCCCAGGAGGAGACAAGCAACCCCTCTGCAACGACAAGAGATGAGTACTCAGAGGAAAGTGATGTACCACAGGCCAAGAGACGAGGACAACGATGACGATGAGCCACCACCATTGCACTGGGAAAGAGGCTCTACGATGAGAGGAGAACCAAGATGTTAAATGTCCCCAAAGTATGTTGAACTGTAGGTGAAATATGCCCACAGCTCTGCACAAGatgaaacattatttttttagatttgtTCAAACTTCTGTCTTGGTGAAATGTTGTCTTTCTTTCCCAGGTCCCCCCAAAAGGTGTAATTGTTCCAGGATAATGTGTTAAGAAATATTTAGAGCACCAGGTGAAATGCACTGCACGATGAAGcctctttttttgtttagataaaagttaaaaaaaaaaaaattacaaagttTCTGCAGTGACACTGCCTTGCACTTTTCATGATTTATGAATTTCACAAACAGGCAAATGGGCTGAAAGGTTGTGTGTTGCAGATGATGGTGTGCCACAGTTTGGGGCCAGTccaataaaaataatcattatttaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300416 lncRNA downstream 162227 24609461 ~ 24609679 (-) True G222062
TU300393 lncRNA downstream 579106 24189134 ~ 24192800 (-) True G222041
TU300389 lncRNA downstream 593919 24177740 ~ 24177987 (-) True G222039
TU300388 lncRNA downstream 603357 24168312 ~ 24168549 (-) True G222038
TU300387 lncRNA downstream 619144 24152479 ~ 24152762 (-) True G222037
TU300456 lncRNA upstream 17074 24794866 ~ 24795350 (-) True G222088
TU300458 lncRNA upstream 19020 24796812 ~ 24797616 (-) False avl9
TU301971 lncRNA upstream 116780 24894572 ~ 24898219 (-) True LOC120552180
XR_005637972.1 lncRNA upstream 117226 24895018 ~ 24904700 (-) False LOC120552180
XR_005637971.1 lncRNA upstream 150532 24928324 ~ 24954497 (-) True LOC120552179
XM_039790199.1 mRNA downstream 1695 24764661 ~ 24770211 (-) True LOC120552289
XM_039790196.1 mRNA downstream 48066 24660111 ~ 24723840 (-) True rnf152
XM_039790308.1 mRNA upstream 18797 24796589 ~ 24854888 (-) True avl9
XM_039790848.1 mRNA upstream 84718 24862510 ~ 24869834 (-) True psme2
XM_039789974.1 mRNA upstream 140580 24918372 ~ 24923172 (-) True emc9
XM_039790943.1 mRNA upstream 185625 24963417 ~ 24968106 (-) True msl2b
XM_039790082.1 mRNA upstream 258092 25035884 ~ 25086902 (-) True LOC120552232
TU300141 other downstream 2553540 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 2554357 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 2762818 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 3909241 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 5445012 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 185653 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 278801 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 778681 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 952964 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 1050299 25828091 ~ 25834224 (-) False mynn

Expression Profile