RNA id: XM_039790242.1


Basic Information

Item Value
RNA id XM_039790242.1
length 5453
RNA type mRNA
GC content 0.50
exon number 40
gene id myom1b
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19006643 ~ 19036833 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGGACACTCTGGTAAGGGCCAATATTATTTTGGTTGTGTAGAAACTGCAGCCCTGTACGCACCTACCTGTAGGTTTCCTGGGATATCAAGCTTTAAGTGTGGAGTTGCACCATCTTTTCCTTTAAAGTTTGGAGTTTGAGACTTTTTGTTCAGGACTaaccacacagacaaacagatcaAAAAACTCAGAAACCCTGGGCTCATACCAGGAGCGGCCTGCAGCATGTCTGGATCTATACCATTCTACCAGAAGCACCATCGCCACTATGACCATGGCTACAGAAGCAGGGAGACAGAGTCTAAACTAAGCCAGTACCAGACCAGCAGCAGATATACTGCTGGCAGCAGCACCTCAGCCATCAGCACGAGTAGGGGACTTAAAGTGTCTTCACATTCTGGGCTGGAAGCAAGCAGACTGAGCCCTGTACCCAAGAGAGCCAAGCCAACTTACTTGGCTGTGGATAAAGAGAACCAAATCATCGGCTATGTAGTGCCTATCTTCAGGGGCAGTCAAGAGTTTGTTACAGGATTTTCGAATACAGAGGAAGCAAGGGTGAGGGACACTGCTGCATACATGGCCCGCAGGGATTTGTTCACCAGTGGCCTGGAGATGGAGAGGTCAGAGCAGATCTCCAGGAGGGAGACCATGCGCGAGTCGGCGGAACGCATCTCTCTGAACAAAAGGATCCATGAACACGGGGAACACTTTAAGCGCATGAACGAAGACAGCCTGATGCACGCCCCGGAGTTTGTGATTAAACCACGGTCCCACACTGTGTGGGAGAAGCAGTGTGTGCGACTGCATTGCACTGTCAGTGGCTGGCCCGACCCAAGGGTCGTCTGGTACAAAAACAATGTGGCAATTGACCCGATTGGCAATGCTGGGAAGTATAAACTTGAGAGCAGATACAGCGTGCACTCACTGGAGATTAACAGATGTGATTTTGATGACACGGCGCAGTATCGCGTCTCTGCCATGAACTCCAAGGGAGAGCTGTCTGCATATGCCTCTGTCGTTGTTAAAAGGTTCAAAGGGGAAATTGATGAGTCCCTGCCATCCCCCAGACATGGCCCAGTGTCTGAGTATGGCATCAACTTCCAGACTCACATTGTTGATAAATTTGGTGTATCGTTTGGAAGAGAGGGTGAGACCATGAGTCTGGGATGTACGGTCATCATTTATCCTACCCTGCACCTCTACCAGCCAGAGGTCCAGTGGTACAGAGACGATGTTCTGCTGTCTCCTTCTAAATGGAACCACATGCACTGGAGTGGAGATCGAGCCACGCTGACACTCACACACCTCAACAAAGAGGACGAGGGTCTCTACACCTTACGTGTCACCACCAAGTCTGGATATGAAACCTACTCCGcctatgtttttgtcaaagaTGCTGATGCTGAGGTTGAAAGAGCTCCCGGTGCCCCTCTGGATGTGCGCTGTCTGGATGCCAACAAGGATTACATTATTGTCACCTGGAAGCAGCCAGCGGTCGATGGTGGCGACTCCATCCTGGGCTACTTTGTGGAcagATGTGAGGTTGGAACCACCCACTGGATCCAGTGCAATGACACTCCGGTTAAGTTTGCCCGTTTCCCCGTCACTGGCCTAGTGGAGGGCCGTTCCTATTTGTTCCGTGTGCGTGCCATCAACAAGAGCGGCATGAGCCGCCCGTCCCGAGTCTCTGAGCCAGTGGCTGCCATGGACCCATCAGACCGCGCCCGCATGAGAGGTACATCTGCTCCCTGGACTGGCCAAATCATTGTCACAGAGGAGGAGCCTGCAGAGGGCGTTGTTCCTGGCAGACCTCTTGAGCTGCAGGTGACAGAGGCAACCAAGAACTATGTGGTGCTGAGTTGGAACCCACCTGGAGAGAAAGGCCTCGAGGGTGTCATGTACTATGTAGAAAAGtgtgtttcGGGCACAGACAGCTGGCAGAGGGTGAACACAGAGATCCCAGTCAAGTCTCCTCGCTTTGCGCTGTTTGATCTCGCCGAAGGGAAATCCTACAGCTTCCGCGTCCGATGCTGCAACTCTGCCGGTGTCGGCGAGCCATCTGACCCAACGGAGGCCATCACTGTTGGCGACAAgcttgATATCCCATCTGCCCCAAGCAAAGTTGTTCCTaccagaaacacagacacatcagtGGTTGTGTCTTGGGTAGCATCCAGTGAGGCCAAAGAGTTGGTGGGCTACTACATTGAGGGGAGCATTGAGGGCAGCAATGTGTGGGAGCCATGCAACAACAAGCCTGTAAAGGCTACCAGGTTCATCTGCCATGGTCTGATGACGGGAGAGAAGTACGTGTTCAGGGTGAGGGCAGTAAACGCAGCAGGGCTCAGCCAGTTCTCCCCAGAGTCTGAGGCTGTGGAGGTGAAGGCTGCTATAGGGGGCGGCATCCCTCATGCATCCCCTGCTCCACCCTATGGCATCACTGtcctggagtgtgtgtgtgactccatGGTGCTGGCCTGGAAACAGCCAAGCTTCATTGGCGGTGCTGACATCACTGGCTACTTTGTGGATTACCGTGAGGTCACTGATGGCGTGCCGGGGAAGTGGCACGAGGCCAACATCAAGGCTATCAGCGATAGGGCCTACAGGGTGTCTGACCTAAAGGAGAACAGGAAGTACCAGTTCCAGGTGCGCGCAGCCAACATGGCAGGTGTCGGCATCCCTTCACTGCCCAGTAACACCTTCCTGTGCGAGGAGTGGACCATCGCCGTGCCAGGACCTCCACATGACCTGCAGGTAAGAGAGGTGCGAAACGACTCTCTGGTGTTGCTATGGAAACCACCTGTGTACCAGGGCCGTGATCCGGTCAACGGATTCTACGTCGACATCAAGGAAGCGGATGCACCAGAGGAGGTGTGGAGAGGAGTCAACAACAAGGCTACGGAGAAGACGTACATCAAGattaaGAATctgaaggaaggagagaggttTGTGTTCCGTGTGCGCGCTCAGAATAAAGCCGGTGTTGGAGAATGCTCAGACGTGACAGAGCCGGTCCCAGCTCTCACCAAACCAGGCACCAAGGAGATAGTAGTCGATGTTAACGATGACGGCATCGTCTCCCTGAACTATGAATTCTGTGACTTGACCCCCGACTCTAAATTTGTGTGGTCCAAGAATTACGAGGAAATCACAGACCAATCCCACCTGACAATAGAGACCAAGGGAAACAAATCCAAAGCCATTTTCAACACTCTTGGGGAGGAGGACATTGGCATTTACTCATGTCTTGTCACCCACACTGATGGTGCTTCATCCAGCTACACTCTCTCTGAAGAAGAGTTGAAAAGGCTGCTGGAGGTCAGCCATGACCACAAATTCCCCATTATTCCCCTGAAGTCAGAGTTGGCTGTGGAGCTGCTGGAGAAGGGTAAGGTTCGCTTTTGGCTGCAGGCGGACAAGATTTCAGCTAACGGCAAAGTCGATTATATCTTCAACGAAAACGCTCTCTCTCAGGGGGAGAAATACAAGATGAACTTTGACAAGAACACCGGCGTGATTGAGATGATCATGGAGAGTCTGACTCCGGCTGATGAGGGCACCTTCACCTTCCAGTTGCAGGATGGGAAAGCTACCAACCAGTCCAGCTTGGTACTGATAGGAGACGTGTTCAAGGAGCTGCAGAAAGAATCAGAGTTTCAGAAGAAAGAATGGGTCAGAAAGCAAGGTCCTCACTTTATCGAGTATTTGGGTTACGAGGTGACACCAGAGTGCTGCGTTATACTGAAATGCAAGGTCGGCAACATGAAGAAGGAGACCTCTGCGCATTGGTACAAAGATGGACGCGAGATCAAATCAGACGAGCATCTCGGCTTCACTGAGGGAGTGCTGAAACTGGAAATTGCTCAGATTTCCAAGAAGGACGCTGGTGTGTATGAGGTCGTTCTGAAGGATGACAGAGGAAAGGACACTTCTACATTGAATTTGACAGATCAAGGTTTCAAGGACTTGATGAATGAAGTTTTCAGTTTCATCGCCAATTCGTCCACTCCACTGAAGATCACAAGCACAGATCAGGGCATCCGCCTCTACACCTTTGTCAGCTACTACAACGATTTACTCCAAGTGACATGGCACTACAAGGATTCAGCCATTGCCTTCTCTGACCGTATAAAGAGTGGTGTGGTGGGAGAGCAGCTGTGGCTGCAGATCTCAGAGCCCACAGAGAAAGACATTGGCAAATATGCCATTGAGTTCAACGATGGAAAAGGTGGCCTGAGAAGGACCGTTGAGCTGTCTGGTCAAGcaTTTGACGATGCTTTTGCAGAATTCCAGAGACTGAAAGCTGCTGCTATTGCAGAGAGAAGTCGTGCTCGAGTAGCAGGAGGCCTGCCTGATGTGGTCACTATACAGGAGGGAAAGGCTCTCAATCTCACCTGCAACATTTCGGGCGACCCTGTGCCAGAGGTCACATGGCTGAAGAATGACAGGGAGATCACATCCGACGACCACTGCATCCTCAAGTTTGCGTCAGGCAAGTTTGCCAGCTTCATCATCACCGGCGTGACCACGTCGGACTCGGGCAAGTACAGCATCCTGGTGAAGAACAAGTACGGCACAGAGAGCGGGGACTTCACCCTGGAAATCACAGAGGGAACACCTGACTTGGGGGTGACTTCATACTCGACTGACGCAGAGGGAAATGTGGTGTTTGGCCCAAACACCCCTAAGGAAAAGATGAAAACCACAGTAACTGGAACGAAAAAGCAGAAGGGAAAGGGTGATTCTGTAACTAAGACTCTTCCAATGGAAAAGGTTGAAGACAAAGATAAAGGAAAGGTTACAGTTGAACCCAAAGCTTCAGATTCAGAACAAACAGAAGATGCAAAAGAAGAAGTTGCGGAGCTGCCTTtgacagctgaccaatcagaagcTCCTGAGCAGCCTGCAGACAGAGTGGAGGAGCCTGGACCAGTAGCTGAAACACAGCCAGAAACACTGAGTGAATCTAATTGAGAAAAGTATTGATTATACTCATATATACGTACATATGCTACAAGTTTGATGTGGGCTTTTGAGCCTTTGATTGCTGTGTTTCCAGTTTGACGTTGCATTTGCTCACATCAAATTTTAATGATGAGGATATTCCACATTTGTGTAATTGAATAGGTATCTTATGGATAGACAGGATTAGGAATGAGTGACAGCTCCGGTTAGATGGTTTAAAGTCGAAGCGAGAGAGGCGAGATTCAGATGGTTTGAAACATGCACAAAGGCTGTGGTCCGCTGTGGCGACCCATAACGGGAGCAGCTAAAAGAAGTATTTTATGGAACATTAGactactttttgttttatatgatGTACTTATAATCACACTTTACAGACCACAGTTTTATAGTTTGCCTGCATTTGATTTGGATATTTTGTCTATACtgtgtttatctttttttgtcatctttgattGAATAAAGGCTGTTGACATATCTATTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298921 lncRNA downstream 176658 18829751 ~ 18829985 (-) True G220893
TU298915 lncRNA downstream 190265 18815906 ~ 18816378 (-) True G220888
TU298903 lncRNA downstream 233146 18772981 ~ 18773497 (-) False LOC120552352
TU298879 lncRNA downstream 266027 18740417 ~ 18740616 (-) True G220860
TU298828 lncRNA downstream 383258 18622691 ~ 18623385 (-) True G220839
TU299030 lncRNA upstream 3432 19040265 ~ 19043216 (-) True G220972
TU299031 lncRNA upstream 3432 19040265 ~ 19043216 (-) False G220972
TU299033 lncRNA upstream 3432 19040265 ~ 19043216 (-) False G220972
XR_005637963.1 lncRNA upstream 279821 19316654 ~ 19317227 (-) True LOC120552156
TU299179 lncRNA upstream 335758 19372591 ~ 19374516 (-) True G221086
XM_039790253.1 mRNA downstream 1478 18989181 ~ 19005165 (-) True LOC120552316
XM_039790254.1 mRNA downstream 5805 18989181 ~ 19000838 (-) False LOC120552316
XM_039790252.1 mRNA downstream 6299 18989181 ~ 19000344 (-) False LOC120552316
XM_039790256.1 mRNA downstream 57148 18938913 ~ 18949495 (-) True mettl4
XM_039789989.1 mRNA downstream 153027 18831587 ~ 18853616 (-) True LOC120552191
XM_039790628.1 mRNA upstream 17427 19054260 ~ 19058076 (-) True chmp5b
XM_039790978.1 mRNA upstream 22874 19059707 ~ 19065576 (-) True LOC120552750
XM_039790453.1 mRNA upstream 32330 19069163 ~ 19070616 (-) True LOC120552400
XM_039790451.1 mRNA upstream 32330 19069163 ~ 19070417 (-) False LOC120552400
XM_039790357.1 mRNA upstream 75363 19112196 ~ 19118982 (-) True lypla1
TU298948 other downstream 57162 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 375168 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 381845 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 2131343 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 2211519 16783069 ~ 16795124 (-) False LOC120552205
TU299133 other upstream 278758 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 1799464 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 2953184 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 3165950 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 3165950 22202783 ~ 22217549 (-) True smpx

Expression Profile