RNA id: XM_039790265.1


Basic Information

Item Value
RNA id XM_039790265.1
length 3470
RNA type mRNA
GC content 0.48
exon number 13
gene id waca
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 6247422 ~ 6277304 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAGAGacactgctgtgtgtctgagtggGAGATGGACTGAGTGAGGGCGCTCTTTCGACCAGTTCGCTGCTGATAGCGTTGAAATACCCACAAGCTAGGTTGAAATAATTGACGGTTTTAGGTCGCCGAATCaactagaaaaaaaatatagtaCCGATATCCATCTTTCACATCCCACTCCAAACACACTAACACGGCATTGATGGTAATGTATGCAAGGAAACAACCGAGACTCGGCGATGGGTGCGACCGAAGAGATTCTCAGCCCTATCAGGCTCTCAAATACTCGTCCAAGAGCCAACCAGGAGGAGACCACCGACATGAAAAGATGCGAGACTCCTCAGATGTCACTCCTCCCTGCAAAATGCTCAGGAGGTCTGACAGCCCTGAAAACAAACACATCGACAGCacagggcacagcagagcaaaGGCTGTCCATACGCACCGGGCCAGAGACAGGGATGGAGGGACCAGTTTTTCTCCACAAGAAAATTCTCACAACCACAGTTCCCTTCATAGCTCCAACTCACATTCTAACCCCAGCAAGACCTCAGACACACCTTACGAACCTGGTGACGACTGGTCAGAGCACATCAGCTCGTCTGGAAAAAAATACTATTACAACTGCAGGACAGAGGTGTCCCAGTGGGAGAAGCCCAAAGAATGGCTGGAGAGAGAACAGAGGCAAAAAGAGGCCACAAAGACTGCGGTTGTCAACAGTTTCCCCAAAGACAGGGACTACAGAAGGGAGGCTATGCAAGCATCGGCAGCCCCTGGCTTTACTGGTTCTAAGTCAACCCAGGTAGACAAGCCTGCAGCAACCCTTGCCTCCCAATCATCATCCTCTGGCTCAGGGAGCTTGAACCCCTCATCAGGGCCCCCTGGATCATCTGCCTCCACGGTGCCTGTGTCCCCAGTCCTGCAGTCCCCCGCCCCCCCACTACTCCAGGACCCCACACTGCTTCGCCAGCTTCTACCAGCACTTCAGACTGCCCTGCAGCTTAACAATGCCAGCATGGATATGGCAAAAATCAATGAAGTTCTCACAGCTGCTGTCACACAAGCTTCATTACAGTCGATGCTCCATAAGATCCTCACTGCTGGACCATCAGCTTTCAATATCACTACTATCCTCTCTCAAGCTGCTCAACTCTCCAACCAAGCTCAGCAATCAAACCAGTCACCCATGTCGTTAACATCGGATGCCTCATCGCCCAGGTCTTATGTTTCTCCAAGGATCAGCACACCACAGACAAACGCTGGTCCCCTTAAACCCCTCCTCAGCACGCAGCCTATCATCTCACAGACAAAAGTGGGCACGCAAGCAGGGAAGCAGGCATCTCATCCCCAGCCCACGTCCCAACAGTCTCTCTCCAGCGATAAGCAGCACGGTCATGATGCCACAACGGCCTCTCCGCGCACTCTGCAGCGCCAAGGCAGTCAGAGGAGTCCCTCCCCGGGTCCCAACCACgtctcctccagcagcagcaacgCCTCCAACTCTGCCGCCGCTCCCACCGCCACCTCAGCAGCCCGACCCTCCTGCTCCTTCACCCCCTCCCTCGCTGCCCACTTCAATGAGAATCTTATCAAACATGTGCAGGGCTGGCCTGCTGAACACGCAGAGAAGCAGGCATCAAGACTACGTGAAGAGGCTCACACCATGGGGAGCATCTGTATGTCTGAGAACTGCACCGAGCTCAAAAACCTCCGGTCCTTGGTCAGAGTCTGTGAAATCCAAGCAACATTGCGTGAGCAGAGGATACTGTTTCTGAGACAGCAAATCAAAGAACTTGAAAAGTTGAAGAATCAGAATTCTTTCATGGTCTGAGAACTTCTGGTCGCGAGTTACAGCGCGGGGGTTGGTGAAAACGGGGAAGACCCATTGCACATAGTTGGAAGCTGGAGGGAGAGCGGTTGTTCAGTTCCTCTTGAGCCcagtcttaacacacacacacccggagCTGCAGTCAGGTTGGCTTTGGACCGTCGGGCTGGGAGAACCAAGAGGAAAACATGAAGAGCTGTTGGAGGGGGAAGGGTGGGACTCTGTTTTGTAAAAACCCATGCCGGGAAAACATGTAGATTTCTTGTAGATGTTATTATCTATGTTGTAAATATGTTTTGTAGATTGAAGCCATGGAAAGCCATGCCTATCGAAGCTTTTGACATCCAAACTAATCAACGCCTAGGCGGCTACATTCATTAGCTAGCCTTTCCTTCATGTTAACTTTTCTGCAGAATTAAAGCTTCATTTTGTTAATTCATAGATCATTGAACCATTGAGCATGTGTGACCTGCACGTAAAcaggatggatggaggaggatGTTTGAAGTCATTTATATACACACAAGCCTAGCATTAAGCATAACAAACTGGTGTCAATGTAGTTTCTTTCCTCAAATATTGGTAAACCGATTACTCTGTCTAGATTATCTTCCTGTGCCCTCTCTGGGTGAACTGTAACCTGTACTCAGGCGTGGTAAACATCCCCATCTTGACTGCTCACAACGGTTCAGTGATCTACTTGCAGTTTCTGGTGGACCTGCATGTCTCAAgtctggaaaaaaataaaaaataaataacagtgcCTGGTGGTGTGGTGAAGTGAGCGATTTCAAAGAAATGTAAGAGATGTGATGGTGTGCTGCTTTGGACCATTCCCACTACCCTCCTCTGGCCTCAGCCCTGCCCTGCCACACCCTCTTCTGGGGCATCAACACTTCACACCCTCCTTGTAGTTTATTCTTTGTGGTCCAAAAGTTTTGgtccttattttttattttattttttttcccctctctccaaCGTTGTACTTATCCATAAGGTAAGGTTGGTACCGCTGGTCCATTCCCTTGTACAGTCGCTAACATACAGTGGAGTTTGAATAAGAGGACGCAGAATTAAAAGGTTTTATTTATAAGAGTTGTAGTGATGAGCAGTTAATCACAATCCGTTTTCATTTGCACCCAGTTTAGGAGTGCACCAGCAGGTTCCAGGCGGTTGTATGTGGATCACCTCTTGTGTCAGAGCAGGGCAACGAGAGGTCACTAGGTCAAATGTGAAATGTATGTATTGTAATAAAGATGTTCAACTAAAGCAAGCACTGGTTATTTTATTGGAGTATTAGGTTTGGTTCATACGCTAGTGCCTTGTTGAAAGTCTTAAGTCTCACAGCCTCATTTACCTGCAAATCCCACACTTTAATTCACCCGGtttgattaaaaagaaaagggagggtTGTTTTTCTAGCACGTCCCGTACCTCTTGTTTGTTTCCCACTGTTGAAGTGCAGGGGCCTAAGCTGCAAAggcctgttgtttttttttgtttttttccaccatACCATCGAGTCTATAATTGAACTGCACCACACATTCAGTAAAGGTGACGACGTCCTTGCTTTGTATATTGTTTCCTGAAGTATATtgacaaatgaaataaaatatgcCTCTCCAGGCCCATGTTG

Function

GO: NA

KEGG:

id description
K23884 WAC; WW domain-containing adapter protein with coiled-coil

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295297 lncRNA downstream 18429 6228775 ~ 6228993 (-) True G218176
TU295287 lncRNA downstream 236357 6010337 ~ 6011065 (-) True G218166
TU295286 lncRNA downstream 257492 5988889 ~ 5989930 (-) True G218165
TU295221 lncRNA downstream 301280 5927203 ~ 5946142 (-) True G218117
TU295326 lncRNA upstream 148704 6426008 ~ 6454966 (-) True G218199
TU295492 lncRNA upstream 1304253 7581557 ~ 7581756 (-) True G218327
TU295494 lncRNA upstream 1314393 7591697 ~ 7593335 (-) False LOC120552501
TU295495 lncRNA upstream 1314393 7591697 ~ 7593836 (-) True LOC120552501
XR_005638018.1 lncRNA upstream 1314398 7591702 ~ 7593335 (-) False LOC120552501
XM_039790875.1 mRNA downstream 6451 6235855 ~ 6240971 (-) True bambia
XM_039790119.1 mRNA downstream 183372 5971194 ~ 6064050 (-) False LOC120552249
XM_039790344.1 mRNA upstream 349285 6626589 ~ 6639687 (-) True LOC120552351
XM_039790233.1 mRNA upstream 363414 6640718 ~ 6683933 (-) False itgb1a
XM_039790232.1 mRNA upstream 363414 6640718 ~ 6683933 (-) True itgb1a
XM_039790235.1 mRNA upstream 419944 6697248 ~ 6762956 (-) False nrp1a
XM_039790234.1 mRNA upstream 419944 6697248 ~ 6762956 (-) True nrp1a
TU295171 other downstream 546846 5700229 ~ 5700576 (-) True G218085
TU295077 other downstream 1210718 5027505 ~ 5036704 (-) True G218019
unassigned_transcript_1391 other downstream 1377817 4869524 ~ 4869605 (-) True trnas-gcu_51
unassigned_transcript_1390 other downstream 1379252 4868089 ~ 4868170 (-) True trnas-gcu_50
unassigned_transcript_1389 other downstream 1380878 4866465 ~ 4866544 (-) True trnas-gcu_49
unassigned_transcript_1409 other upstream 1023765 7301069 ~ 7301140 (-) True trnaw-cca_32
unassigned_transcript_1410 other upstream 1025392 7302696 ~ 7302767 (-) True trnaw-cca_33
unassigned_transcript_1411 other upstream 1064520 7341824 ~ 7341895 (-) True trnaw-cca_34
TU295672 other upstream 1917625 8194929 ~ 8195879 (-) True G218453
TU295702 other upstream 2153160 8430464 ~ 8430930 (-) True G218471

Expression Profile