RNA id: XM_039790272.1


Basic Information

Item Value
RNA id XM_039790272.1
length 4402
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC120552328
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 22841027 ~ 22888231 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCTGCAAAGTGGCTTGGTGGTCAGTTTggatctttttatttttgtcgaAGTAACCTTAGCGAACTATACAAGTTTTACCGTGAGCGACAGGACAACATTTTCTCTACTGTAGCTTCTGATTCCAGCGACCTCTTACAGTGACTTCACCGCACTTTCAAATAGAACATTAAAAATCGTTTTCCTCTGAGGCGTCCTGAAGGGAGCTAACCAGCGTTAGCATTGGGCTAGCATGACAACCAGAAGAAGAACTGCCATCACCCTCCTCATCATTCTCCCCTGTGGCTTTGCTAGCAGCGGGTCTCCATCATGGTCTACAGCTGTGAGCCTAATGCTCCCAAATGGATGATGATTATAATGTCGGCCTTCCACATCTATATCATTCACTCGTGCCCAAAGGAATTCTCACCTACCCCTACAGGAGCACCATCTCCAGCGGGCCATCTCGGCGCAGCAGGTATATGGCGAGAAGCACAACATGGTCATCCCCGTCCCCGAGGCAGAGCGCAACATCACGCACTACGAGTCCCTCTACCCCGGGGAGTTCAAGATGCCAAAGCAGCTTATTCACATACAGCCTTTCAGTTTGGATACAGAGCAGCCTGActacgacctagattcagaggATGAGACGTTTGTGAATAAGCTGAAGAAGAAAATGGAAATTACTGCCCTGCAGTTTGAAGAAATGATAGATCGACTGGAGAAAGGCAGTGGACAGCAGCTCGTCAGTCTCCAGGAGGCCAAACTGTTGCTGAAGGAGGACGATGAGCTGATCAAGGAGGTGTTTGACTACTGGAGCCGCAAAAGGAAAACCTGCAAGGGTGGCTCCCTCATCCCCAACGTCAAGCAGGAGAAGAGGGACGGCTCCAGCACCAGCGACCCCTATGTGGCCTTCCGCCGACGAACCGAGAAGATGCAGACCAGAAAGAACCGAAAGAATGACGAGGCATCATATGAGAAGATGCTGAAACTGCGCAGGGACCTGAGCCGAGCTGTCACCATCCTGGAGATGATCAAGAGGCgggaaaagagcaagagagaacTGCTGCACCTCACACTGGAGATTGTGGAAAAGAGGAATGTGATGCCAGACTTCGGCAGTGAGGTGATGGCAGAGGCACTTGCGCAGCGAGCTCTGGTGAAGCCTGTCTACACCATCCCCATCATTCCCCCATCCACCAGTAATCAGTACAGACATCAGGACCACTTGGATATAAAGGACTACAAAAAACCGGAGAAAACGGAGGCAGTACGAACCAAAAGGAAATATGAAAAGAAACCCAAGATCCCTCCTCTGTCAGCGCCTCAACATTCAGGGCCGTCGGTGTTCAATCCCAAGGACCTCAACCAGTACGATTTCCCCAGTTCAGATGAAGAGCCCTTCTCACAGATCCATTCAGGTTCCTCGGAGGCAGAAGAGGAGAATGACCCAGATGGCTGCTATGCGTTCAGGAGGAAGGCCGGCTGTCAGTACTACGCTTCTCGTCCGGACCAGAATTGCAACTGGCCCTGGGTAAGCCCGTCAGAGGGTGGGCTTGGCAACCCGCGCTTCCGCTTCTGTCTGACCTCGCTGAACATGCCGCCGCGCTGCATAGGTTTGGCACGGCGCCGCTCGGGCAGAGGAGGCAGGATCTTGTTGGACAGAGCGCATACAGATCTAGACAGCCTCCGTCAGAGCCTGGACTCTGACCCGGAGCCCGAACCGCTCGCCTCACCACTTCCAAGTTCTCCGCTCCGCAACTCCAACGCCAGTACCTCAGAAACCAATACCTCGCACCCAGCCAGCTCCTCCCACCTTCCCCCCTCTTCATCACCCCTGTCATCGTCGTCGTCATCTGCAACACCTATGGACCTCTGCCAGATTCTTTTGAACATTAAATCTTGCCGCTGGAGGCACTTCAGACCACGGACGCTATCCCATCACCCCTTGGGTGGAGGAGACTTGTCTCGCAGAGGATTTAGGGATTATAGCCGGACAGTGTCAGGACTAACCCGGACCCTGTCTGGAGGGGCCAGCTCCCAAAACCGCACCGGCCCGCCCCCCGCCCCGGTCAATGTGTTCACGGCAGAGCAGTACCAGCAGCACCAGGAGCAGCTGGCCCACATGCAGAAACAGCAGCTGGAGCAGAGcaaacagcagcaacaagcCAACAACTCTGCAGCAGCTACCAACCCACAGGCTCTGGTGTCCAAGACGTTGGACCAGGCCAGCGCCCAGTTTGCTGCCTCGGCCCTCGTCACCACGGACCAGCTGCTGGCCTTCAAGTCCAAAGAGGAGCTGGTGCTGGCAGGGGGAGTCAACGGGGTCCTGACCGGTGCAGGTGTTTTCAAAGGCTTGCACCTCTCCAGCACCACCGCGGCCCTTCACCAGACCAACCAGTCGACGCACACTACCCCCTCCGCGGCCCCGACCTTCCTCCAGCCCTCTTCCAACCTGGCGGCCCATTCGCCCGCCAACGCCGTCCCCACCTCCCTCGCCTCCACCCCCAGCGCCCATgcagcggcggcggcggcggcgctGGGGATCCTGGGATGCAACGCCGCCAACGCCACCCCTGCCACCACTCAGGTCCTCATCGGGAACAACATCTGTCTGAGCGTGCCGTCGGCCGGACGCCACATTCCCCGGACCCTCGGCAACGTGCCACCCTCTGCCTTAAAGCTGTCCGCCACCACCAACCTGCAGATGCCCAAAGTCTCTGGAGCGTCGTCCCTGGACATGGGCTCAAGGGATAATCACGACGAAGACAAGCCAGCACTGAACAGTATAGCAGACAACACAGTGGCCATGGAGGTGACGTAGTAGCGGTGCAGTGAAGAGTCCACTCTTTAGGTGCTGTGCATCGTAGCATCGGGAATGCAAAAAGGGACAGCAGGACTCTGGCGCAGACCGACAGAGCGACGGGTGGCCACGGCCGCTCGCTTGCAATTCTCATCTCTCAtactttttaaacctttttttttttttttgttattttgttactGTTAAAAGTAAAAGATCTGTAAATTATGAATATGGCAAAATTAGTATCTGTACAGTAACTACATATTTGTAATATCCCCTTGTATATATTACTTGAATACAGAACTGTCcatttgtgatgtttttttttgcacttggAGTCAaacttaaaaggaaaaaaaagtcaaccaAGTAAGTTGAGTGTGAGAGATGCGGGAGTTGTATAGAGAAGAGTTTTATCACATCATGTGCATGGTGCGGAGCCTGCtgtttttatctatttattgtGCTGTGtttacaggttttttttgttttgcttttgtttgtaattctttttttatttgtacacTGTACCTTTGTTGGTTCCTGTGCTGTAGTAAATGTTAGGTAGCTACGGACTCCTGggtatttttgtatattgtgAACACAAAGCAGGTTCCCCCTCCCAACGTTTGTTTTGGGTCCCTGTGCTTCTCTCTGTGGATCATGTGAAAATCAATGGTGACATACATAcaggtcaggaggaggaggaggaagatgaagatgaGGCGGTGTGTTGGCGGCTGACTGTGGTTCACTTGAAGAGAGGCGCGCCCCCTCTTCCTGGGAGCTTCCATTAACATTGTCCCAAACACAAGTAACAAAACAGGGATGAAGTCTCTTCCCAGAAGCCTCTGCTGCTTCAGATTTAAAGCACTAtttttttgtgatgtttttgttCATGGTTTTGATAAATATTAATGCTgcttttgtattcttttttttttttttttaaaggggttgTTCTTCATTTTCATGCAAGCGGAGTCCCCTTTCCATTTGTTTTATCCCccaaacatttttgtaaaacagaagttcagttatttttgtatttttttttttctttttcttttcttgtggTCGACATGATTGTAAACTTTTCGTTAATTGAAAGACTTCATTCTTTTGTTCGTTACTTGTTCATGTATAGGTGATAAGGGAGGCGGATGGGCAGTAATCGCTGTACGTGTCTCATCATTCCagttttttaataacaaaaaaaatgctaaTGAGGGGACTGAGGAGGAGTGGTGggaaaacggcagttttctcctctctcttcccctttttctttattttttttttttttgttttctttttttttctttgaaaaaataATCTCCAGACGGCTGCAAGGCCAAAAACCACAAGTATTGGGTGCCTTCCTTTGGGGAATTTTATGTACTCTCTTCTGTGAAGAGTTAGGCACAAAGGCAGCATTACTTAGTAGTGCTTCTCGTCTTTGTCAGAATCTGAATGCCCAGTCCAATGGCAGGATATATCCTTGAGGTTTACTTGTCCCACCTGGAGGCTGAAaagactaaaaaaaataaaataaaaaaatgtgacaGAACTCTCACTAAAATAAGACAATAAAGCCCAGGGCATTAAATGTGAA

Function

GO:

id name namespace
GO:0032777 Piccolo NuA4 histone acetyltransferase complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300182 lncRNA downstream 501157 22337075 ~ 22339870 (-) True G221857
XR_005638025.1 lncRNA downstream 505543 22325273 ~ 22335484 (-) True LOC120552529
TU300161 lncRNA downstream 532793 22307488 ~ 22308234 (-) True G221844
TU300160 lncRNA downstream 539812 22300418 ~ 22301215 (-) True G221843
TU300154 lncRNA downstream 541452 22243807 ~ 22299575 (-) True G221837
TU300267 lncRNA upstream 71135 22959366 ~ 22960660 (-) True G221926
TU300269 lncRNA upstream 93733 22981964 ~ 22982351 (-) True G221928
TU300274 lncRNA upstream 151618 23039849 ~ 23040134 (-) True G221933
XR_005638061.1 lncRNA upstream 182723 23070954 ~ 23071831 (-) False LOC120552653
XR_005638060.1 lncRNA upstream 182723 23070954 ~ 23071535 (-) True LOC120552653
XM_039790663.1 mRNA downstream 39278 22697027 ~ 22801749 (-) False LOC120552530
XM_039790664.1 mRNA downstream 39282 22697027 ~ 22801745 (-) False LOC120552530
XM_039790665.1 mRNA downstream 67243 22697027 ~ 22773784 (-) True LOC120552530
XM_039789867.1 mRNA downstream 144163 22691030 ~ 22696864 (-) True ggh
XM_039789868.1 mRNA downstream 152625 22679691 ~ 22688402 (-) True LOC120552124
XM_039790941.1 mRNA upstream 24331 22912562 ~ 22921256 (-) True LOC120552717
XM_039790942.1 mRNA upstream 180489 23068720 ~ 23070897 (-) True LOC120552718
XM_039790844.1 mRNA upstream 240413 23128644 ~ 23308035 (-) False LOC120552656
XM_039790843.1 mRNA upstream 240413 23128644 ~ 23222054 (-) True LOC120552656
XM_039790845.1 mRNA upstream 240413 23128644 ~ 23220282 (-) False LOC120552656
TU300141 other downstream 622661 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 623478 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 831939 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 1978362 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 3514133 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 2075214 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 2168362 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 2668242 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 2842525 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 2939860 25828091 ~ 25834224 (-) False mynn

Expression Profile