RNA id: XM_039790295.1


Basic Information

Item Value
RNA id XM_039790295.1
length 5436
RNA type mRNA
GC content 0.58
exon number 65
gene id col11a1a
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 9087151 ~ 9173024 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATCGTGGCTTCGGTTTGTGGAGCTTGCCCAGCCCTCCTGTCCGTGGACGCACCAAGTGTACCGACTGCACTCTGTGCGTTTTGGTTAAAGCCCGACTACCTTCACTGTGAAGGCTGGGCACTGGAAAGGAGGATCGGGGGCCTCGGTGTGGCTGAGAGAAGAGGCTAAAACTTCTCACTTATGGCTTTTTTGTAGGACAGTTTCCATCATCATTTGGGATTGTGGAAGGGACGTCATTTAAAATCACCTGAAGCCGCTCAAAAGTTTTATTCATTTGTGGGCGCCCGACCATGGAGATGCAAAGGTGGTCCACAAGGTGGAAAACGAAAAGGTGGTTTATGGATTCCACTGTAACCGTACTCATCACTTTAACCCTGGTTCTACAGGCTACCAATATCAGAGCAGCAGAGCCAGTGGATGTGCTAAAAGTATTAGAATTTCAAAATTACCCCGAAGGAGTGACGAAAACATCAGGACTTTGCACAGCCAGAAGAGCATCAAAGCCGGACTCAGCTTACAGAGTTGCCAAGCAGATCCAGATCAGTGCCCCCACCACACAGCTATTCCCTGGAGGTGTTTTTCCTGAGGACTTCTCCATCCTGACTACAGTGCGCCCCAAATCAGGCCTCCAGTCCTTCTTGCTGTCCATTTACAACCAGCAGGGAGTCCAGCAGCTGGGCGTGGAAGTGGGACGTTCACCTGTCTTTCTGTATGAGGATCACACTGGCAAGCCAGCACCGGAGGACTACCCTCTGTTCAGTACTCTCAACCTTGCTGACGGAAAGTGGCATCGTGTGGCCATCAGCGTGGAGAAGAAAACGGTCACCATCATTGTAGACTGTAAGAAGAAGATCATCAAGCCTCTCCTCAGGAGTGACCATGGTTCCATCAACACCAATGGCATTACCGTCTTCGGCACCAGGATCCTGGACGAGGATATTTTCCAGGGTGACATCCAGCAACTTCTGATTGTGGCTGATCCCAAAGCAGCATATGACTACTGTGAACATTACAGCCCCGACTGTCACACCCCCCACAGTGATTCCCTGCAGGCCCAGGAGCCAGAGGAAGAGAGAAAGAAACGTAGTGTCTCCATGAAAAAGAAGAGGACCAGAAAGTCCCTCAGTAAAACTAAGGCCAAGCCCTTAAACTTCTTTGCTGCCAAAAAATCACCAGCTAAAAAGTTTGCCACTAAGAAGAAGCGACAGATGCCTGGCTACCAGGCCACAGCGCCAGCTCGACCAAGAGGCAATTTTAGGGTTGCTGGGGTTGGAGGAGCCTTCGGCCAGAAGGGAGAAAAAGGCGAGCCGGCTGTAATTGAGCCTggCATGCTGATTGAAGGACCACCAGGCCCCCCTGGCCCAGCTGGTCTTCCAGGTCCCTCAGGTCTACAAGGACCCCCAGGCCCTGCTGGAGATTCTGGTGACAGGGGTCCTCCTGGTCGTGCTGGTCTGCCTGGTGCTGATGGTTTGGCAGGGCCCCCTGGTACCATGCTGATGCTGCCATTCCGTTTTGGTGGCGATGGTGAGAAGGGTCCAGTGGTGTCGGCCCAAGAAGCCCAAGCCCAGGCCATCCTGTCCCAGGCCAGACTGGCTATGAGGGGACCCTCAGGGCCAATGGGTTTGACAGGAAGATCTGGACCAGTGGGTCTGCCTGGTGCTCCTGGACTGAAAGGTGAATATGGAGACCCTGGTCCTCAGGGTCCCCGGGGCATCCAAGGGCCTGCAGGACAACCTGGCAAACCTGGCAAGAGGGGTCGTGCCGGAGCTGACGGGTCCCGTGGAATGCCTGGAGAGTCAGGCTCCAAGGGTGACAGAGGCTTCGATGGACTGCCCGGACTGCCTGGTGAAAAGGGACACAGGGGGGAGCCAGGGCCAATGGGACCCACAGGTGCCTCTGGAGAGGATGGACAGAGAGGCGAGGATGGAGAGATTGGGCCCCGAGGATTAGCTGGCGAGAGTGGTCCTAGAGGTTTGCTTGGACCTCGTGGTCCTCCAGGACCCCCTGGATCTCCTGGTGTTGCTGGAGTTGACGGGCCTCCAGGTCCCAAAGGAAACATGGGACCGCAAGGAGAACCAGGCCCACCCGGGCAGCAGGGAATCCCCGGAACACAGGGTCTTCCTGGTCCTCAAGGCCCTATCGGACCACCTGGTGAAAAAGGACCGCAGGGCAGGTCGGGGTTGCCTGGACTACCTGGAGCTGATGGGCCTCCTGGTCATCCTGGTAAGGAGGGTCCACCTGGAGAGAAAGGAGCCCTGGGTCCATCAGGCCCACAGGGTCCTATTGGTTATCCTGGCCCTCGTGGTGTCAAGGGTGCCGATGGTGTTCGTGGTCTCAAGGGGGGAAAGGGAGAGAAGGGCGAGGATGGTTTCCCAGGTTTCAAGGGAGACATGGGACTCAAAGGAGACCGGGGTGAGCTTGGCATAGTTGGGTCCCGTGGAGAGGATGGTCCTGAGGGTCCCAAAGGCCGAGCTGGCCCCAACGGAGAGTCAGGTCCCATTGGTCCTGCTGGAGAGAAGGGTAAACTGGGCGTTCCAGGACTGCCAGGTTATCCAGGAAGACAAGGACCTAAGGGCTCTAGTGGTTTCCCTGGGTTCCCTGGAGCCAACGGCGAGAAAGGAGCTAGgGGCATTGCAGGCAAACCTGGGCCAAGAGGGCAAAGAGGTCCAACGggTCCTCGTGGGGGTCGAGGAGCCAGAGGTCCAACAGGAAAACCTGGTCCCAAGGGCACAGCAGGCAACGACGGCCCTCCAGGTGGGCCTGGTGAGAGAGGGCCTCAAGGACCTCAGGGACCAGTGGGCTTCTCTGGACCAAAGGGCCCCCCTGGACCAGCTGGAAAGGACGGGCTGCCCGGGCACCCTGGTCAGCGTGGAGAGACGGGTTTCCAAGGAAAAACTGGCCCACCAGGTCCAGGAGGTGTTGTCGGGCCCCAGGGACCAACTGGAGAGACTGGCCCTGTTGGTGAGAGAGGCCACCCTGGACCCCCTGGCCCACCAGGAGAGCAGGGTCTTCCAGGTGCTGCTGGCAAGGAGGGAGCTAAGggAGACCCCGGACCTCAGGGATCCTCTGGTAAAGACGGTCCCCCCGGCCTTCGAGGCTTCCCTGGAGAAAGAGGTCTACCTGGCGCCACGGGCCCAGCAGGTCTGAAGGGAGGAGAGGGGCCCCAGGGTCCACCTGGTCCTGTTGGTTCTCCTGGTGAAAGAGGTCCTGCTGGTTCAGCCGGTCCGATTGGCCTGTCTGGTAGACCTGGCCCTCAGGGTCCCCCTGGTCCTGCTGGAGAGAAGGGAGCACCTGGTGAGAAAGGACCTCAAGGTCCTGCTGGTCGTGATGGCGTCCAGGGTCCTGTTGGTCTGCCCGGACCTGCTGGACCTCAGGGTCCACCTGGAGAGGATGGTGACAAGGGAGAGGTTGGAGAGCCCGGTCAGAAGGGAAGCAAAGCCGACAAGGGAGAACAGGGTCCTCCTGGCCCAGCTGGTCTCCAAGGTCCCATAGGTGCCCCAGGTCCTGCTGGAGCTGATGGAGAGCCTGGTCCCAGAGGTCAGCAGGGTATGTTTGGACAGAAGGGAGATGAAGGTTCCAGAGGTTTCCCTGGACCCCCTGGTCCCATCGGTCTGCAGGGGCTTCCTGGACCTCCTGGTGAGAAGGGAGAGAACGGTGATGTTGGCCCCATGGGCCCTCCTGGTCCCCCTGGTCCCAGAGGTCCTCAGGGTCCTAGTGGAGCTGATGGTCCACAAGGCCCTCCAGGTGGTGTGGGCCCCATGGGATCCGTGGGTGAGAAGGGTGAACAAGGTGAGGCCGGAAACCCAGGACCACCCGGAGAGGCTGGAACTGGGGGACCTAAAGgcgaaagaggagagaaaggagaggctgGACCCCCTGGAGCTGCTGGACCTGCTGGTGCCAAAGGACCCCCTGGAGATGACGGTCCAAAGGGCAACCCTGGTCCTGTTGGATTCCCTGGAGACCCTGGTCCTCCTGGTGAGCCAGGTGTTGCTGGCACTGATGGAGAATCaggagagaagggagaggaTGGTGAGGCTGGTCAGCCGGGACCTCCAGGTCCATCAGGAGAAGCTGGCCCACCGGGACCACCTGGCAAGAGAGGACCTCCGGGGGCTGCTGGTGCAGAGGGCAGACAAGGAGAGAAGGGCGCTAAGGGTGAGGCAGGTGCAGAGGGTCCAGCAGGAAAAACGGGACCGGTTGGACCCCAGGGACCATCAGGAAAGCCCGGTCCAGAGGGTCTGCGTGGGATCCCTGGCCCTGTCGGTGAACAAGGACTGCCCGGCTCCCCAGGACAGGATGGTCCACCTGGCCCCATGGGTCCTCCTGGTCTTCCTGGTCTGAAAGGTGACCCTGGATCTAAAGGTGAAAAGGGTCATCCAGGTTTGATTGGCCTGATCGGACCCCCTGGTGAGCAAGGAGAGAAGGGAGACCGAGGTTTGCCCGGGCCCCAAGGTTCTCCCGGTGGCAAGGGCGACAGTGGTATCGGTGGTTCTTCCGGTCCTCTCGGTCCCCCAGGCCCCCCCGGTCTACCTGGTCCTCAAGGTCCCAAAGGATCCAAGGGTTCATCTGGTCCTGCTGGTGCAAAGGGAGACACTGGTACAATTGGTCCTCCTGGTCCTCCTGGTCCACCAGGTGAAGTTATCCAGCCCCTGCCCATCCAGTCACCCAAAAAGACCAAGCGCTCCAGTGGCATGCAGTCAGACGCAGCCGCTGCCATCATGGACTATGGCGAGGGAATGGAGGACATCTTCGGCTCACTCAACAACCTCAAACAGGACATTGAACGCATGAAATACCCCATGGGCACACAAAACAACCCTGCCAGGACTTGCAAAGATCTGCAGCTCTGCCACCCAGAGTTCCCTGATGGCGAATACTGGATTGATCCGAACCAAGGCTGCTCCGGGGATTCCTTCAAAGTCTACTGTAACTTCACCGCCGGGGGCGAAACCTGCATCTATCCAGATAAGAAGTCCAATGGAGTCAGAATATCTTCATGGCCCAAAGAAGTCCCTGGGACATGGTTCAGTGAATTTAAGCGTGGGAAAATACTTTCCTATGTTGACGCAGATGGAAACTCAATAAACATGGTACAGATGACCTTCCTCAGACTACTGACAGCCTCTGCCAGGCAAAACTTCACCTACAGCTGCCACCAGTCTGTGGCGTGGCACGACGCCACCAGTGACAGCTACAACAAGGCGCTGCGCTTCCTGGGCGCCAACGATGAGGAGATGTCCTATGACAATAACCCTTACATCAAGGCCCTTTCAGACGGCTGTGCGACGAGGAAGGGCTATGGAAAGACTGTGATGGAGATTAATACTCCCAAAATCGATCAGGTTCCAATCATCGATGTCATGTTGACTGACTTTGGAGACCCTAACCAGAAGTTTGGGTTTGAAGTTGGGCCCATCTGCTTCCTTGGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295913 lncRNA downstream 92121 8996104 ~ 8996388 (-) True G218649
TU295908 lncRNA downstream 130376 8957663 ~ 8958133 (-) False LOC120551928
TU295899 lncRNA downstream 139422 8948220 ~ 8949087 (-) True G218640
TU295898 lncRNA downstream 147780 8939896 ~ 8940729 (-) True G218639
TU295869 lncRNA downstream 215349 8872952 ~ 8873160 (-) True G218614
XR_005637987.1 lncRNA upstream 1078 9174102 ~ 9185369 (-) True LOC120552334
TU296026 lncRNA upstream 124013 9297037 ~ 9297238 (-) True G218735
TU296030 lncRNA upstream 201835 9374859 ~ 9375212 (-) True G218739
XR_005637928.1 lncRNA upstream 241942 9414966 ~ 9415451 (-) True LOC120551892
TU296033 lncRNA upstream 241942 9414966 ~ 9415331 (-) False LOC120551892
XM_039789421.1 mRNA downstream 5401 9029123 ~ 9083108 (-) True olfm3a
XM_039789422.1 mRNA downstream 5402 9029123 ~ 9083107 (-) False olfm3a
XM_039789528.1 mRNA downstream 117871 8957409 ~ 8970638 (-) False LOC120551928
XM_039789526.1 mRNA downstream 117871 8957409 ~ 8970638 (-) True LOC120551928
XM_039790552.1 mRNA downstream 236783 8797781 ~ 8851726 (-) True prkdc
XM_039789977.1 mRNA upstream 441816 9614840 ~ 9726073 (-) True LOC120552183
XM_039789978.1 mRNA upstream 441816 9614840 ~ 9726072 (-) False LOC120552183
XM_039789547.1 mRNA upstream 594568 9767592 ~ 9777716 (-) True nrros
XM_039789546.1 mRNA upstream 594568 9767592 ~ 9777715 (-) False nrros
XM_039789549.1 mRNA upstream 613155 9786179 ~ 9790167 (-) True fbxo45
TU295702 other downstream 657579 8430464 ~ 8430930 (-) True G218471
TU295672 other downstream 892630 8194929 ~ 8195879 (-) True G218453
unassigned_transcript_1411 other downstream 1746614 7341824 ~ 7341895 (-) True trnaw-cca_34
unassigned_transcript_1410 other downstream 1785742 7302696 ~ 7302767 (-) True trnaw-cca_33
unassigned_transcript_1409 other downstream 1787369 7301069 ~ 7301140 (-) True trnaw-cca_32
TU296313 other upstream 1404375 10577399 ~ 10669527 (-) True G218950
TU296891 other upstream 4016629 13189653 ~ 13194041 (-) False bmi1a
XR_005637977.1 other upstream 4515397 13688421 ~ 13696741 (-) True pdk3a
XR_005637996.1 other upstream 4651769 13824793 ~ 13940381 (-) False sema5a
TU297468 other upstream 5873124 15046148 ~ 15048663 (-) False xkr9

Expression Profile