RNA id: XM_039790300.1


Basic Information

Item Value
RNA id XM_039790300.1
length 2366
RNA type mRNA
GC content 0.43
exon number 11
gene id anxa13
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21575606 ~ 21587153 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGACGTCACATGCTGCCTGCTTTGGGCccgtagactttttttttttgggccgcAGCTTGTACCAGGAGGACAAGTATCCCAAACTAGGACTTTTTCTCCAACAGATCACCAGCCGCAGCCGGAAAACACATCCTCAAAATGGGCAACTGTCAACCCACTATCGTGCACTATGAGGATTTTGATGTCGTGGCTGACATTAAGGCCATCCGTAAAGCCTGCAAAGGGTTTGGAACTGATGAGCAGGCCATCATTGACATCCTGGCAAACCGTAGCGCAGCTCAGCGTCAGGAAATTAAATATGCCTATTTTGAAAAGTATGATGATTTGGTggatgttttgaaaaaagaattGTCTGGGAGCTTTGAGAACGCCATCCTTGCCATGCTGGACCCGCCCGTCGTCTTCGCTGTGAAGGAGCTGAGGAAGGCCATGAAGGGAGCAGGCACTGATGAAGACGTCCTGGTGGAGATCCTGTGCACCGCCACCAACGCTGACATTGCCATGTTCAAGGAATGCTACTTTCAAGTGCATGAGCGTGACCTTGAAGCAGATATTGAGGGAGACACAAGCGGGGATGTAAGGAATCTGCTGACGGCTCTATTGCAGGGCAACAGAGATGAGAGTTACGAGGTGGATGAGGAATTGGCTGAACAAGATGCTACCTGCCTGTTTGAGGCTGGAGAGGGTCGTTTTGGGACAGATGAGTCCACTTTCAGCTACGTCCTGGCCTCCAGAAATTACCTGCAGCTCCAGGCCACCTTCAAGATATATGAGCAGCTTTCTGGAACTGAAATTCTGGATGCCATTGAGAATGAGACTTCtgggacactgaagaaatgCTACATTGCTCTTGTGAGAGTTGCTAAGAACCCGCAGCTGTACTTTGCCAGACGTTTGCACGACGCAATGAAAGGAGCGGGCACTGACGAGGACACCCTTATTCGCATCATTGTGTGTCGCTCTGAGTACGATTTGGAGACCATCAAAGACATGTACCTGGAGAAGTACGATGTGTCTCTGAAGGAAGCCCTGAAGGACGAGTGCAGCGGGGACTTTAAGCGCCTCCTCCTGGCCATCTGCCACTGAAAGTCTGTTAAGAGCAGGGCGGATGTGGACGACAGCGGCAGAGACAGCATGTATGTTTATACTGAGGGTGCTGCTGTTTTCTGTCTAATAAACTAATACTACACAGTCTCTCTATGTGACATTATGTAGAAAGCAGGAGGGTGGAAGTGATAGAACAATTAACCTGGCCCATGTCAAAATCTGAGTTACTGTGAATTCGGGTGGCtctctttttaaactttttccACAGGCATTAATTACAAAAGTTCCCAACGAACTAGATTTACTCattttttctgtgtctgtcaaTGACTGCCCATTTCTTAGTCAATTTTTAGCTCCAGTCCTTAACACCTTTACCAGCATTTTTACACAGTGATATGTAAGTTTAAGTCACTGTAAACAAGCACCAAAATGAATACATTCCCAGGAGCTGACTGTAGTCACACTGATGGAATTACTGTGAGTGTGTAAATTAATTCCAGTGGTGTGAGGCTTGATAGGATAATCACATTGTAAACCTGTTTGTATACTGGGAAAAATCAGCCATGGCCTCAGTATGTCTCTGCTGCTGATTATTACCATCGTAACCAAGTATTAATACTGTTTTAGATCAAATAGCTATGTATTCATATATGCTTCTTTCTATATCTTTCACCCTCCATGCCCCAAACTCAGTGACTGTTATACTTCACTGCTGTTATAACCAATGCAATCACTCCATGTGGCTTGAAACGTGTGCGTTTAAATGAAGGAATGTGAAAGTTTAAATTGAAGGAATCTTAGCTGGTATCATGAAGGATATGCAATGTTATGTGAATGGATTTGTATGAAACGCAGAAGAGAATATATTTTTCATCAGTTGCTTATTGAAAGATACTTTATATtgatttacagtacatgttgCATTTGTATCTTCTACTACAATTAGATAAACTTGACAAATCCAAATACACCTCACCTTGttatatatgtatttcttttgtattttaCAACTAACACAGTAGAgtgtttaatatatataatttagttTACTGTTCTAGGTAGGCCAGAGGGTATATGAGAAGAAACATTTAACATCTAGGTAGTCTGATGTcatttgtgtgtctctataagGCAGCTGAGATTTGTTAAAAGTACCACTATTGTAAACATTTTTGCAACAAGCTGAACTGCACTACACGAGATAGTTAGAACAAATCAACCAAAACATCAGTTGGAGTTATCAGTGGGACTAGTATTTCTCTCTCTAGCCAAAGAATTTTATTCTACCTGCAAATAAAGTTCTCTTTAACCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299875 lncRNA downstream 157599 21415951 ~ 21418007 (-) True G221616
TU299861 lncRNA downstream 202915 21345698 ~ 21372691 (-) False G221604
TU299860 lncRNA downstream 202915 21364801 ~ 21372691 (-) True G221604
TU299823 lncRNA downstream 255196 21319890 ~ 21320410 (-) True G221582
TU299807 lncRNA downstream 273559 21301484 ~ 21302047 (-) True G221567
TU299960 lncRNA upstream 144134 21731287 ~ 21731487 (-) True G221695
TU299984 lncRNA upstream 227343 21814496 ~ 21815723 (-) True G221708
TU299991 lncRNA upstream 245003 21832156 ~ 21832884 (-) True G221712
TU300069 lncRNA upstream 357217 21944370 ~ 21944690 (-) True G221768
TU300100 lncRNA upstream 504388 22091541 ~ 22091753 (-) True G221793
XM_039789437.1 mRNA downstream 1096 21564869 ~ 21574510 (-) True LOC120551882
XM_039789431.1 mRNA downstream 30156 21485232 ~ 21545450 (-) False myo3a
XM_039789424.1 mRNA downstream 30612 21485222 ~ 21544994 (-) False myo3a
XM_039790301.1 mRNA upstream 3791 21590944 ~ 21598756 (-) True LOC120552336
XM_039790419.1 mRNA upstream 17562 21604715 ~ 21689934 (-) False gpr158a
XM_039790418.1 mRNA upstream 17562 21604715 ~ 21689934 (-) True gpr158a
XM_039789470.1 mRNA upstream 106278 21693431 ~ 21700043 (-) True ptchd3a
XM_039790163.1 mRNA upstream 119752 21706905 ~ 21711616 (-) True LOC120552272
TU299660 other downstream 712941 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 2248712 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 2626125 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 2944131 18610236 ~ 18631475 (-) True G220833
XR_005637957.1 other upstream 402864 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 615630 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 615630 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 3376292 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 3469440 25056593 ~ 25086708 (-) False LOC120552232

Expression Profile