RNA id: XM_039790301.1



Basic Information


Item Value
RNA id XM_039790301.1
length 1006
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC120552336
representative True

Chromosome Information


Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21590944 ~ 21598756 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCATCATTCTgctgattttaaatgtttacaaACTTTCACCGCTCGCAGTCAGTCTGCTCGAACCATCACATCAACGGGCAGGAGAAATGTGGAGGTGAAAAGTGAGGAGTCCAGCAGTGAGAGGGTTGAGTTGACCGTGGGGGGGAAAACATCCAAACCCAAAATGTTGTTCGAGCTTTCTTCTGGCTCGTGTGAGGACGGTGAAGCCTTCGGGTGCAGAAATGGCCTTTTTGAATCACCATCACCACTCCGTCTTTCACCAGCGACTGCGGCAGCACAAACACAGATGCCAAGCGCCAAGCCCAAGGCCAGGACGCTGGTAGCATGCAGGCAGCTGACTGATGGGAACGAGGCGGCCTCTCTCAAGGACCAATCTCCTCTGCCGTTACTAACACTCACAGGGACTGTAAGTCTGGCAAGCACTGACCCCAGGAGGCCCTCTTCAGTCCATGCATCCATCACTGGAAGAGCTTCAGTATCAGCTGCTCAACGGCAAGAAGCCCAAAGATTAAACGGGAGGTCGGCTAGCATCACCAGAGAGgaaaaaaaaagccagtATTACAGAGACCTTAGCCGGCAggtagaggagaggaaacagcagTTGGAAAGGGAGAGAAGTAGAAATGCTGTTGAAGAACAAAAGCACATTGACACCATGCGGCACAGCATCTGGGGGATGCCAGGATGTGGCGCCCCAAACTACCACCTGGGCACAGTGAAACGGACCAAAAGCCTCGGCAACGCCGGGATTTTACCCCAGGAGCAGACCCGTGATAAAGTCTTCAGTGGGACCCCCTTCCACCGCCTGTGAAATGAAGACCATAACATCCCCTAGCCGAGACCACTGAGAGCTACGGAGCAGCCAGGCAAATAACACTCTCTGACTTTTGTCTTCAAGAAATGTTAGCTTTGCAGCCATagagatatttgggctgtttCAGCAGCAAATTCTGATGGTGGCAAAGAATTACAGAATGTCAATAAACTCAGACTGAGAGAACAGAAA

Function


GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0019538 protein metabolic process biological_process
GO:0007281 germ cell development biological_process
GO:0006508 proteolysis biological_process
GO:0003006 developmental process involved in reproduction biological_process

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU299875 lncRNA downstream 172937 21415951 ~ 21418007 (-) True G221616
TU299861 lncRNA downstream 218253 21345698 ~ 21372691 (-) False G221604
TU299860 lncRNA downstream 218253 21364801 ~ 21372691 (-) True G221604
TU299823 lncRNA downstream 270534 21319890 ~ 21320410 (-) True G221582
TU299807 lncRNA downstream 288897 21301484 ~ 21302047 (-) True G221567
TU299960 lncRNA upstream 132531 21731287 ~ 21731487 (-) True G221695
TU299984 lncRNA upstream 215740 21814496 ~ 21815723 (-) True G221708
TU299991 lncRNA upstream 233400 21832156 ~ 21832884 (-) True G221712
TU300069 lncRNA upstream 345614 21944370 ~ 21944690 (-) True G221768
TU300100 lncRNA upstream 492785 22091541 ~ 22091753 (-) True G221793
XM_039790300.1 mRNA downstream 3791 21575606 ~ 21587153 (-) False anxa13
XM_039790299.1 mRNA downstream 3791 21575606 ~ 21587153 (-) True anxa13
XM_039789437.1 mRNA downstream 16434 21564869 ~ 21574510 (-) True LOC120551882
XM_039789431.1 mRNA downstream 45494 21485232 ~ 21545450 (-) False myo3a
XM_039789427.1 mRNA downstream 45950 21485222 ~ 21544994 (-) False myo3a
XM_039790419.1 mRNA upstream 5959 21604715 ~ 21689934 (-) False gpr158a
XM_039790418.1 mRNA upstream 5959 21604715 ~ 21689934 (-) True gpr158a
XM_039789470.1 mRNA upstream 94675 21693431 ~ 21700043 (-) True ptchd3a
XM_039790163.1 mRNA upstream 108149 21706905 ~ 21711616 (-) True LOC120552272
XM_039790162.1 mRNA upstream 108149 21706905 ~ 21711145 (-) False LOC120552272
TU299660 other downstream 728279 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 2264050 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 2641463 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 2959469 18610236 ~ 18631475 (-) True G220833
XR_005637957.1 other upstream 391261 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 604027 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 604027 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 3364689 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 3457837 25056593 ~ 25086708 (-) False LOC120552232

Expression Profile