RNA id: XM_039790331.1


Basic Information

Item Value
RNA id XM_039790331.1
length 2270
RNA type mRNA
GC content 0.50
exon number 9
gene id snx7
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 4899955 ~ 4954979 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCGCTCGCCTCTCGGTGTCTTTCCGCCGCTCTGAGTCTGAAGTTGTGCTTGAAGTTTACCTTTTACGTTTGCCCCGATGAGCTCAGTCGGTTTCAACAGTTTGGAAGTATAAGATGAGCGGACAGACGGTCCCCGCGGACTTCTCGGGACACATGCTGGACCTGGACGAGGACGAAGACCTGGAGGTTTTCAGCAAGAACACGTCCCTTGCTGATGGAAGTCCCATGCCCAACTCTCCCAGCTCCATGGTCAACCAGTACagactggaggaggaggaggaggaggagcagcaggacgccAATGCCAGAGACCTCTTCGTCAGCGTTGATAACCCAGAGAGCCATGTCACTGCCATCGAAACCTTCATCATGTACAGAGTGGTGACCAAGACCACGCGGAGCGAGTTTGATTCCAGTGAGTTCGAGGTGCGCCGGCGCTACCAGGACTTCCTGTGGCTCCGAAGCAGACTGGAGGAAAACCACCCGACACTCATTGTCCACCCGCTGCCGGAGAAGTTTGTGATGAAAGGCATGGTGGAGCGCTTCAACGACGACTTCATCGAGACCAGGAGGAAAGCCCTGCACCGCTTCCTCAACAAGATCTCGGTGCACCCCATACTGTCTTACAGCCAGCACTTCAAAGTCTTCCTCACTGCAGagGATTTGATGTCTCACAGGAAGCAGGGTCCGGGCTTCCTGAGCAGGATGGGGGAGACGGTGAGGGCGGTGGCCAACTCGGTACGAGGCCTGAGGAGCCGGCCGGAGGAGTTCACGCTGATGCAGGAGTATGTGGACGACTTCAGTAACAAGATCTGCTCTGTGGACAAAGTCACTCAGCGGATCATCAAGGAACAGAGAGAGTATTTGGACGAGCTGAAGCAGTACAGCCCCACCTACAGCCAGTGGGCGGGGTTGGAGGAGGAGCTGGCCGAGCCGCTGAGGGGCGTGGCCAGCTGTGTGGAGCGTTGCGGTCTGGAAACAGAGGAGCAGATCCAGCATCTGTCTCAAGTGCTCGTCCCCGCTCTGCACGAGTACGTCCTCTGCGCCGAGACCCTGAAGGCTGTTATGAGACGGAGAGACAACATCCAGGCGGAGTTTGAAGCCAAGAACGAGGCCCTGGCATCCAGAAGAGTGGACCAAGAAGCACTGCAGGACGAGGTGGACGGTCTGGCGGACCGCGTGGAGCTGGCCAACAACGCCTTGAAGGGGGACTGGTCCCGCTGGCAGAACAGCATGAGAACTGACCTCAAGTCAGCCTTTCTATCCACGGCCGAGAAGAACGTGGAGTACTACGAGCAGTGCCTGGCTGTGTGGGAGTCGTTCCTCCTGTCTCAGAGAGCGGAGCCCAGCGAGCAGAATGATGGGGAAGATGCCTCTTAAAGTGTTTAGATGATCGAAACGCCTTTCCAGCAGactctgttgtctctccagCACAACCAAATATAGACTTTGAACCAATGTCCACATATGCCAACAGGCTCCGCctctctttcattctttctttctttctttctgtctgtctgtctgtctgtctggccaaAGAAGTTAATCCAAACCAGCCATTCCAGTGATGATGGTGCATCACTAATACCAACACTGTGATCCAAATATCCACATGTTAAGGTTTACACTCCCTCTTTGTGCATTGCCAAAAGTTAAAAGAAGACTCCTGGCTCTTCTGTCCAATATTAAGGTGGATTAGTATGGCTGTACACCACACAGGCTCTGATTGGTCGGGATCCAGCATGAAGTCCGCCATGTGTTTTGGCCAAGTCACAGCTAGAATTTTTTTATCTAATCTGACAGTGACCTTGGCACAAATAAATTATCAATCTgtcttaataataatagtaatttaACATGCACGCCTTTGACTGAAAGCAAGTTCAGGTCTTGCATCTATACTGTGTGTTCTCATTTATTTACTAATGAAGAATCAGCCAGTGCAGATTTATGTAAAGAGTGTACACTGAAAAGTAAAattataaaatgtcatcacaaGAAATGCATTGAACATCTACATCCATCTAAAGCTAGAGTTTTCCTTTCAGAATGCTCTCAGTAACAGTACCATTGATCTCCCGGTGCACTTTGAGCAGAGAAGCCTTAAATGATCTTGTTGTTTGGGCCGATAGAGATTTCACGTTTACACGAAGACCAGCTACAATGTCTTTGTAACAGAATGCTCAAAATAATCTTGTAatactgatcttttttttttttcttctcttttttgcttttatcattgattatgtaaaaaaaaaaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295045 lncRNA downstream 2490 4897243 ~ 4897465 (-) True G217992
TU295042 lncRNA downstream 8464 4891018 ~ 4891491 (-) True G217989
TU295041 lncRNA downstream 9427 4890312 ~ 4890528 (-) True G217988
TU295029 lncRNA downstream 113337 4786393 ~ 4786618 (-) True G217977
TU295028 lncRNA downstream 137686 4760265 ~ 4762269 (-) True G217976
TU295120 lncRNA upstream 601927 5556906 ~ 5557610 (-) True G218051
XR_005638024.1 lncRNA upstream 643250 5598229 ~ 5606091 (-) True LOC120552525
XR_005637998.1 lncRNA upstream 685016 5639995 ~ 5655806 (-) False LOC120552435
XR_005637997.1 lncRNA upstream 685016 5639995 ~ 5655806 (-) True LOC120552435
TU295175 lncRNA upstream 834200 5789179 ~ 5789505 (-) True G218088
XM_039789734.1 mRNA downstream 286228 4570417 ~ 4613727 (-) True LOC120552070
XM_039789739.1 mRNA downstream 367715 4525301 ~ 4532240 (-) True LOC120552074
XM_039789748.1 mRNA downstream 389346 4466851 ~ 4510609 (-) True rsu1
XM_039789749.1 mRNA downstream 389346 4492419 ~ 4510609 (-) False rsu1
XM_039789753.1 mRNA downstream 444426 4433632 ~ 4455529 (-) True c1ql3a
XM_039790651.1 mRNA upstream 769256 5724235 ~ 5729256 (-) False LOC120552519
XM_039790652.1 mRNA upstream 769334 5724313 ~ 5729223 (-) False LOC120552519
XM_039790649.1 mRNA upstream 769334 5724313 ~ 5729203 (-) False LOC120552519
XM_039790650.1 mRNA upstream 769334 5724313 ~ 5729203 (-) True LOC120552519
XM_039790047.1 mRNA upstream 892462 5847441 ~ 5848397 (-) True LOC120552212
unassigned_transcript_1391 other downstream 30350 4869524 ~ 4869605 (-) True trnas-gcu_51
unassigned_transcript_1390 other downstream 31785 4868089 ~ 4868170 (-) True trnas-gcu_50
unassigned_transcript_1389 other downstream 33411 4866465 ~ 4866544 (-) True trnas-gcu_49
unassigned_transcript_1385 other downstream 53721 4846162 ~ 4846234 (-) True trnaa-agc_29
unassigned_transcript_1381 other downstream 61892 4837991 ~ 4838063 (-) True trnaa-agc_28
TU295077 other upstream 72526 5027505 ~ 5036704 (-) True G218019
TU295171 other upstream 745250 5700229 ~ 5700576 (-) True G218085
unassigned_transcript_1409 other upstream 2346090 7301069 ~ 7301140 (-) True trnaw-cca_32
unassigned_transcript_1410 other upstream 2347717 7302696 ~ 7302767 (-) True trnaw-cca_33
unassigned_transcript_1411 other upstream 2386845 7341824 ~ 7341895 (-) True trnaw-cca_34

Expression Profile