RNA id: XM_039790341.1


Basic Information

Item Value
RNA id XM_039790341.1
length 2724
RNA type mRNA
GC content 0.54
exon number 7
gene id ntng1a
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 9476783 ~ 9591177 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGAGGGAAACCATAGGTGTGCGTGGGAGGGGAAACAAGCTGAGTGTGCGTCTCATCTAATAGAGCCTAGGAGCGCATTATCTTCCCCGTCATCTCCGTCTGGGCGGTCGGTGCTGCGCCGTGCCTTTCCGGGAAACCATCAGTAGAAGGTGCGTTGATGCGAGCGGATTTTCTCGGCCGCCGAGTCTAATTGGTGCGATTCATGTCCCAGTTGGGTGTCTGAAACCTATTCGTAGCGAGGGAGAGGTGAGAGTTGGGACGAGATTCTCGCAGAGATCCGCAAGCAGGACTGTTTGGAAATGAAGGAATTATAAACGGGGCATAAACAGGAGGGACGCACGccagcaggtcaaagttttcttttgcagaagTGGGGGTTTTCCTTTCTGCGGACATCACCGTGCCTCAGATTGACGCCGTGATGGAATGACACTTGGAGAGAGGATGATGGACACTTTGGCACCGGAGCTCCTGCTCAGAAATCCTCCTGTTTACGCCCGGCGCGGTGCTGACCGAGCCCTCAGGACGGTGATCAGTCATTTGTTTTGAAGTGGCAGGAAAATCCTCTCTTGATCGTTTTCTCCCCCGGTCGCCAAACAAGAGTGCGAGATGGTGCGCGCAGCGATTCCTCAGAACCTGACGTGCGTACTCATCACATTCCCGTTAAGGAGCGCATCTTAAAGAGCTTCTTTCTTCATTCATGTTCATTCTGCCGCTCTGAACTTGTTGAACGGCGTTAAAGAGCAGGGGGACAGGGAGAACCCCGTACAAGAAATCACCAGATCGCCACGCAGGAACAGGaccatgattgacagctgggcgAGCTGAGGAGACCTGTCACTCATCTTCCTATCAGCGTGTCAGAGGACTATCTCCTTCTCGCCTTCCCCCTCTttgtcctccttctcctccaccaCCATCCTCTTCCCTCCCCTCAATCCTCTCCTCTTATCTTCTCAATGGGCTGGTAACCTCACCATCCCTCCTAGTTATCCACCACTCCAGAAACctgaaagagacagaaatagtaaagaaaaacaacaacaactcttCTAAAAGATTGTCTCTCCACCTGAGGGAAGTTTGACATGCCTCCTCACTCCAGTTGAGTGAGTTGTAGTAAGTGGAAGTAGAAGAGGGATCCCTTGTTATTACACCTTCAGAAGGAGATACACCTCCTCAAGAAGGAGCCGAGAGAGGACCAGTCATGCGTTTCCATTTTGCGTTGACGCTGCAGGCGCTGTGGACCGGTGTTTGCCAGGCAGCCATGCAGCACTACCCTGCAGCGTGGGGCCACTACGATGTGTGTAAATCCCAGATTTTCTCAGACGAAGGCTTAACCTGGGACTACATGGCCTGCCAGCCAGAGGCAGCAGACATGACCCAGTACCTGAAGGTAACTCTGGATCCCCCCAACATCACCTGTGGAGACCCTCCGGAGACATACTGTGCCCTGGAGAACCCCTATATGtgtaataatgaatgtgacGCCACCACGGAGGAACTCGCCCACCCTCCGGAGCTTATGTTTGACATCGAGGGCCGTAACCCCACAACCTTCTGGCAGTCCACATCTTGGAAGAAATACCCAAAGGCCCTCCTGGTCAACATCACGCTATCTTGGAACAAGACCATTGAGCTGACAGACGACATCGTCCTTACCTTTGAGTCTGGCCGGCCCGAGCAGATGGTCCTGGAAAAGTCGTTGGATTATGGGCGAACCTGGCAGCCCTACCAGTTCTATGCCACTGACTGCCTAGACGCCTTCACCATGGAGCCCAAGACGGTGCAGGACCTGACTCAGCATACCCTGCTGGACATCATCTGCACTGAGGACTACTCACGAGGTTATGTGTGGAAGTATGATAAAACAGTGCGCTTTGAGATCAAGGACCGCTTTGCGCTGTTTGCTGGGCCCCGGCTCCACAACATGGCTTCGCTCTATGGCCAACTGGACACTACCAAGAACCTGCGGGACTTCTTTACCATCACAGACCTGAGAATCCGTCTGCTCCGGCCCGCTACAGGAGCTACCATGGTGGACGAGAATAACCTGTCCAGATACTTCTATGCCATTTCTGATATCAAAGTCCAGGGCAGGTGCAAGTGCAACCTTCACGCCAACAGCTGTGTATATGACAAAGAGAAGTTGAGCTGCGAGTGTGAACACAACACAACTGGCCCTGACTGCGGCCGCTGTAAGAAGAATTACCAGGGCCGAGCATGGAGCGCTGGCTCCTACCTGCCCATCCCAAAGGGCACAGCCAATATCTGTATTCCTAATAACATTGGTCCAGTTAAGTGTAATTGTAATCCCTTTGGCTCAGTCAGTGATCGCTGTAATGGCACAGGATTTTGTATATGTAAGGAGGGCACTACAGGGCCTAAGTGTCAGCAGTGTCTACCCGGCTATTTGTGGGACGATGGCTGCAAATCCCGGGTGTGTGACAACGAGCTCCTGCGCTGCCAAAATGGCGGAGTGTGTGTCAACAACGTCCGCTGCAGCTGTCCCTCAGACTACTCAGGCCTGCTGTGCGAGAAGCCCCGCTGCGAGTCGGAGCTGGGGGGCTGCGGGGGCCCCAATTCGGGCCAGGCCCCCCTGACGCCTCCATCATCCcccaggctgctgctgctgctgctgctgctgggctcGGCGCTGCGGAGAGAGGCCTCCTGCTGGCCCGCTGTGCTCTGAAGAGACCCATGACCTTTAACCTTCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295976 lncRNA upstream 142528 9336332 ~ 9336539 (+) True G218693
XR_005637936.1 lncRNA upstream 186414 9260442 ~ 9292653 (+) True LOC120551942
TU295962 lncRNA upstream 228308 9250470 ~ 9250759 (+) True G218687
XR_005638014.1 lncRNA upstream 267982 9208182 ~ 9211085 (+) True LOC120552481
TU295933 lncRNA upstream 306134 9166381 ~ 9172933 (+) True G218666
TU295971 lncRNA downstream 23663 9614840 ~ 9665678 (+) True G218690
TU295993 lncRNA downstream 155852 9747029 ~ 9747273 (+) True G218709
TU295994 lncRNA downstream 156168 9747345 ~ 9747706 (+) True G218710
TU296015 lncRNA downstream 221042 9812219 ~ 9813878 (+) True G218724
TU296018 lncRNA downstream 251142 9842319 ~ 9842709 (+) True G218727
XM_039790842.1 mRNA upstream 16024 9460305 ~ 9463043 (+) True prmt6
XM_039790580.1 mRNA upstream 249190 9211918 ~ 9229877 (+) False rnpc3
XM_039790582.1 mRNA upstream 249190 9211918 ~ 9229877 (+) False rnpc3
XM_039790581.1 mRNA upstream 249190 9212052 ~ 9229877 (+) True rnpc3
XM_039790270.1 mRNA upstream 522527 8913264 ~ 8956540 (+) False abca4a
XM_039790880.1 mRNA downstream 146102 9737279 ~ 9745454 (+) True LOC120552675
XM_039790881.1 mRNA downstream 146107 9737284 ~ 9745454 (+) False LOC120552675
XM_039789548.1 mRNA downstream 156725 9747902 ~ 9762135 (+) True sh3glb1a
XM_039789552.1 mRNA downstream 199135 9790312 ~ 9796422 (+) False fam168b
XM_039789550.1 mRNA downstream 199136 9790313 ~ 9796422 (+) True fam168b
TU295978 other upstream 20367 9458183 ~ 9458700 (+) True G218695
TU295977 other upstream 100920 9376944 ~ 9378147 (+) True G218694
XR_005638015.1 other upstream 248904 9211918 ~ 9230163 (+) False rnpc3
XR_005638067.1 other upstream 740425 8738575 ~ 8738642 (+) True LOC120552752
TU295658 other upstream 873244 8600960 ~ 8605823 (+) False G218441
unassigned_transcript_1412 other downstream 641309 10232486 ~ 10232557 (+) True trnac-gca_34
TU296163 other downstream 831409 10422586 ~ 10423249 (+) True G218848
TU296196 other downstream 897090 10488267 ~ 10494988 (+) True G218875
TU296191 other downstream 932261 10523438 ~ 10526204 (+) False dcaf11
XR_005637949.1 other downstream 1178198 10769375 ~ 10815975 (+) False zgc:101569

Expression Profile