RNA id: XM_039790370.1


Basic Information

Item Value
RNA id XM_039790370.1
length 3988
RNA type mRNA
GC content 0.47
exon number 23
gene id esyt2b
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18374720 ~ 18407925 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTCTTCATCGTTACCGAAGTACAATTGCTCATTACCAGCTGTGTTTACCGCTAATGAGCAGCAGATGGcggtgttcttttctttttagggCGGCACTGACAGCATGATCCCTGTGCGTTTTTGGAAATGAGCATTTAACCTGTGTAGAAGCAGAGCGAGTAGAGCTGTGGACTGGACCGGACTGGCTCAGCGGCCCAATTTGAACCATGCTGAATGCATTCCCAAGCTTTTAGTCGTTGCGGAAACTAAAGTGGTCAATGCCAACGATTCCCCCGAAGGCCATGGGCTGGTGTGCAGGTGAGCCGACGTGAGAACTGGCTCCCGAAAGGAACCGCTTCGCACATGGGGACCGTGTCACCCAACCTTATCCGCATTTAACTGTTTAAAGACGGACTCCGAAGCACAGAGCCATGTCTAGAGACAACATGACAGATAAACGAGGAGCCCAGTTGCCTAAGGAGAATGGACACATCGCGCCGAGCCCCGCGCAGCCCAGCGCCAACTTTCCCCATCCTTCAGTGGGGACCATACCCGATGATATCCCGGTGTCCTCGAACAACGAGTTGACACAGACCTGGGCTCACGTTGCTAAAACGTTTGTTCTGATTTTCCCTATTTACGCATTGGGCTATTTTGAGTTCAGTTTCAGCTGGCTGTTGATTGGACTTGTTATCTTCTTCTGGTGGAGGAGAATCACTGGAGGGAAGCACAGCCGACTGAGCCGAGCTCTTGCTTTCTTTGAGCAAGAGGAGAGTATCAACCAGGGTCTTGCGAGCTCTGATTTACCACCATGGGTCCACTTCCCAGATGTAGAGCGAGTGGAGTGGCTGAACAAGACAGTGAAACAGATGTGGCCGTACATCTGCCAGTTGGTGGAGAAACTGTTCCACGAGACGATCGAGCCGGCGGTGAAGGAGTCGAACGCCCACCTCAGCACCTTCTGCTTTAGCAAGATCGACATGGGAGAGAAACCCCTGAGGATCAACGGGGTCAAGGTTTACACAGAAAATGTAGACAAGCGACAAATCGTCATGGACCTACAGATCAGCTTTGTTGGCAACACCGAGATTGACGTAGACATCAAACGCTACTACTGCAAAGCCGGCATAAAGAGCATCCAGATCCACGGCATGTTGAGAGTGGTGATGGAGCCGTTGCTGAGTGATATGCCTCTTGTTGGAGCTCTGTCTGTGTTCTTTCTCAAGAAGCCActTCTGGACATAAACTGGACTGGCCTCACCAATATACTTGACATTCCTGGGCTCAGTGGCTTCTCTGACAATCTGATTCAAGACATTATCAACAGCTATCTGGTTTTACCCAATCGTATCACCATCCCCCTGATCGGGGATGTGGAACTGGCCAGGCTACGCTTTCCCATGCCAAAGGGAGTCCTGAGGATTCACTTCTTGGAGGCTCAGGATCTGGAAGGGAAGGATACCTTTCTGGGAGGGCTGATCAAGGGCAAGTCCGACCCGTACGGTGTCCTGCAGATTGGCAACCAGCTGTTTCAGAGCAAGACTGTGAAGGAGAGCCTCCATCCCAAATGGAACGAAGTTTATGAGGCTTTGGTGTACGAGCACTCAGGTCAACACCTTGAGATTGAGCTGTTTGACGAGGATCCTGACAAAGATGATTTCCTGGGAAGCCTGATGATTGATATGACTGAGCTGCACAAAGAACAGAAGGTTGATGAGTGGTTTGACCTGGAAGAAGCTCCTACTGGGAAACTCCACTTAAAACTGGAGTGGCTGTCTCTGCTCTCCACTCCTGAGAAGTTGGACCAGGTGCTGCGAAGTGTGCGTGCAGAAAGGAGCCTGGCCAATGATGGACTATCGTCAGCACTGCTTGTGGTCCATCTGGACTCAGCAAAGAATTTGCCTAGCAACCTGTCAGATTTCACCTATGACGGGTTGAAGCAAGTCTTTAAGGCTCTGAAGTGTGCAAAGAAGAGTAGCAGCGAACCCAGTTCGTATGTCCAGTTTACTGTTGGACACAAAACACTTGAGAGCAAGATCCGGTACAAGAACAAGGAGCCACTGTGGGAAGAATGTTTCTCCTTCTTTGTTCACAATCCCAGGAGGCAGGAGCTTGAGCTGGAGGTAAAAGATGACAAGCACAAATGCACCCTGGGTAATTTGACGGTGCCCTTAAGTGGCCTGTTGGAGGAGAAGGACATGACGCTGACTCAGTGCTTTCCTCTTAAGAACTCCGGGCCCAGCTCCACCATTAAACTGAAGATGGCCCTGAGGATCCTGTCCCTGGAGAAGCAGGTATCCTCCGACCAGCCCTCCTCCATCCAGGTCAGGAAGTCCAGTGCGCCGCAGCCAACCCCAGCCCCCACCCAGAGACGATCAGTCTCAGATTCCCCGCTGCTTCCACCCACGCCTCCACCACCCATAGACGCTTCCACCCTCACCCTCCAACACAGGGACGGCGAGCCATACTCAGCCAGCCCTCTCCGCAGTTTCTCTAACCTGAGCACCTGCATGTCTAGCTCCCAGAAACACCTGCCTCACAAGGAGTCCACACCCAGCCTGGCCTCAGATATCTCCCTGCCCTTCGCCACCTTGGAGCTTCAGCAAAGGCTTTGTCAGCTGCAGAATGGTTCGGCCCCCAGCCAGTACCCACTGGGCGAGATCCAACTGACTGTCCGACACAGCTCCCAAAGGAACAAACtcattgtggtggtgcacgcttGCCGTAACTTGATAGCCTTCACCAAAGACAGCTCGGATCCCTACATACGCCTCTGTTTGCTGCCTGACAAGAGCCGAACGGGGAGGAGAAAGACCAGCACAATGAAGAGGAACCTTAACCCTGTTTATGATCAAACgtTTGAGTTTAGTGTATCTATGGTGGAGCTCCACAGGAGAACTCTGGATGTAGCGGTGAAGAACGGAGGGAGCATCCTGTCCAAACACAGAGGGCTTTTGGGAAAGGTTCTGGTAGATTTAAGTGGGGCGGATATATCAAAAGGATGGACACAATGGTATGATCTGAGTGAAGATGGTGTGTCGTGTCAAGGCATAAGAAGTATTCAAGACTCCCTCCTCACACAATGAAACCACCTCTCCACTGTAATATAGTGATTTGTTAATATAAGGGCACACCATTTTGTTGTATTCATGTACATTTTTCATATAGTTTACAACACTTATTTTGGCATGcaagacattttttaaacaactaTCATTTCATTAATGTGAGATATTGTCACATATTGTaatgaaacacacaaactgCCTTGTCTctattttcagtgttttatgtaaatatctaaaaactaatatataataatttgcaGGGGTTTTCAAGGCATTATATTTCcttaaaataaatgatattgAAATGTGTCAGAAATGTTATTGCTTTCTGTCGCATTTGTTAAAATGTGACAAATTCTGGTTTGTCGTCTGAGAGAACTCTTACCAAAGGAACAGATAGAATCACAAAAGTAGGCTTAAGTAGCCTTGactttgatatttttttgtcatgccgTGTTATTTGATTGTTTACCTGTTATTGTTCTTTATGCTTGATTACAAACATGGAATGCACATATGCAGCGAAAAAAATTATTGCTCTGCATATATTAAGATGACTGTGAAATATTGGATGTTACTGAATACCAGTGAGCATTTTAGGGCTATGAACAAGTGCTGTATAATATGAAGGATACTTGAATAAGGTTTGATTGATGGATTTGTTGAACAAACTGAATATTATGAGCAGAGATAACAGCTATTGCATTTTATGAGCAGGGCTGCCAGAACTTGTTGTTAAGATGACACAGCTATGTCGTAAGGCATGTACATGTTTTGCCACACAGTCATAACTGTTGGAggtttttaatacttttcttGTTATCTATCCTgtgccttaaaaaaaaaaccctgctaTGTAATTTTTGCCTTcctaatgttattattttgaaTGATATGATGCCTCATGGGTTTTGAAGAATAAATGGTTTCTCTTGTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298686 lncRNA downstream 160331 18207365 ~ 18214389 (-) True G220732
TU298696 lncRNA downstream 173202 18188724 ~ 18201518 (-) True G220742
TU298640 lncRNA downstream 271564 18066795 ~ 18103156 (-) True G220695
TU298631 lncRNA downstream 325236 18049016 ~ 18049484 (-) True G220688
TU298627 lncRNA downstream 352831 18020560 ~ 18021889 (-) True G220685
TU298790 lncRNA upstream 18857 18426781 ~ 18483776 (-) False si:ch73-174h16.4
TU298776 lncRNA upstream 64201 18472125 ~ 18578077 (-) False LOC120552692
XR_005638063.1 lncRNA upstream 64211 18472135 ~ 18497789 (-) True LOC120552692
TU298818 lncRNA upstream 202312 18610236 ~ 18697970 (-) False G220833
TU298828 lncRNA upstream 214767 18622691 ~ 18623385 (-) True G220839
XM_039790909.1 mRNA downstream 694 18359504 ~ 18374026 (-) False ncapg2
XM_039790908.1 mRNA downstream 694 18359504 ~ 18374026 (-) False ncapg2
XM_039790907.1 mRNA downstream 694 18359504 ~ 18374026 (-) False ncapg2
XM_039790906.1 mRNA downstream 694 18359504 ~ 18374026 (-) True ncapg2
XM_039790534.1 mRNA downstream 16722 18231466 ~ 18357998 (-) True ptprn2
XM_039790675.1 mRNA upstream 18838 18426762 ~ 18430468 (-) True si:ch73-174h16.4
XM_039789642.1 mRNA upstream 205226 18613150 ~ 18617399 (-) False LOC120552023
XM_039789641.1 mRNA upstream 205226 18613150 ~ 18617399 (-) True LOC120552023
XM_039789645.1 mRNA upstream 209741 18617665 ~ 18620964 (-) True chmp4c
XM_039789648.1 mRNA upstream 232333 18640257 ~ 18648623 (-) True arl8
TU298248 other downstream 1499420 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 1579596 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 2089985 16266303 ~ 16284735 (-) False drd3
XR_005638012.1 other downstream 2089988 16266303 ~ 16284732 (-) False drd3
TU297865 other downstream 2309499 16064670 ~ 16065221 (-) True G220124
TU298817 other upstream 202312 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other upstream 216802 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298948 other upstream 531075 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 907667 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 2428373 20836297 ~ 20862665 (-) False LOC120552536

Expression Profile