RNA id: XM_039790384.1


Basic Information

Item Value
RNA id XM_039790384.1
length 4077
RNA type mRNA
GC content 0.48
exon number 30
gene id LOC120552366
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 15539203 ~ 15553054 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCATGCATGGTTTAGTCCTGGGAAGACTCACAACCAACCGTCGGGGACGCACTGACATCTAGTGGCGCTTTTCAGAGAAGCAGAATCCCCCATTGAGGTTATTGCTTTCAGTTCTTTGGCACTTCACTTTTGCTGAGCTTTGATGTACAAAGTAATTAATGGAGGGAAGATGGGAAGTTTTTCGAGGAGCATGAAGAGGAAACATccaaagatatacagtatgtatcatCGTCACTGAAGTGTGATACACTAGCTACTTGCACATCGAGCTGGTAACATAAACAACACAGTGTGGATATGCCTCCAGCATCAGCAGCACAAATAATATCCCCCAATCCAGACAGAGGTTTGGGCTTAAGTTTCCTGCTGGGAAATGACTAtgaaaggaagaagaagaaacttaAGGAGGAGCTTCAACTGGACTACAAACATTATGTTGCCAAGAAAAAGGATCTGAAAACTAGTGAACCTCATCCACAACCCCAGGGTTTCTCCCTACCTATTGATGACAGAATATcagttcagGAAAAACTAAGAGaggatagaaaaaaagaatacaacCTCTTCCTACAAGAAAAAGCTCAAATTGGAAGGTTAAAGAGGGGAGCACCTCCTGTTATTTCAAAGcctGGACAGATTCAAGCTTCAGATGCTGTGTACATTTCTTCTCCAGCTTCTCCGCGGCCCATCCTCAACacccatacaaacacacaccgtCCTCCCAGGGAGCGCCCTGCATCCAGGAGAGATGCTGCCACTCTGACTGAGACAGTGGATAATGGAAAAAGCATAGGGACTTGGGGTCCAGGCCATCGGAGACGAAGGCGTTGGCAACTCCATAGACAAAAAGAGCCATTTAGCTCTGAGGAggagccaatcacagacaaagATGAAGAGTTTGAGTTCAGACACAGGAGGCGACAAGACAGACACACTCCAGAGCCGGAGtacaaagaggagaggagaaccAGAGAACGCAGAGCTGTCAACAGAGCTCCTCAGGACATAAAGGAGATGGAGGCACCTGGTCTTCATGATCAGAACAACAATGAAGGGGATTGGAAGTCAGATCGGCAAATGCCAGACAGCATGATGATGGCTGCAAGATCTAGACCTGCTACCAGCAAGGATAAAGCAGAGTTTGCTACTGGACTAATGATCGGAGCAGTAGAAGAGCAGGGGGCCTCTCAGATGAGGAAAGAAAAGTATAAGCAAGAGCTGCTGAAACAAATTGCTGAACAGAAGAGAAACAAGATCAGagagaagaaGCTTGAGCTGAGGGTTGCTACCCCCGGAGTCAGAGACCTTGAGAAACAGTTTGGGGCTGTACATCAGCAATATAACAACTGGAGACAAGATGTCCCCTACAAGCCCGGCATAGATCTGGGGAAGGACCCAAATACAAGGCGAATTAATGACAAACACACTGAAGACACAGAACAGAGAGGCCCCCCAGGACAGTCCCATGTGGACTACAGTCAGCTGACAGGGAAGACAATGCCTTGGTCTGGAGTGAGAGCAGCACAAGGTGTCCCCCCGCTGGACTACTTTAATGAGGACTACCACAGGGACTTCTCAAACATCCTAGGAGAGGTGGCCAACCCGAGGGTTGCTGGTGTTCCTCCTCCTGTTCTTCACACTGTGACTAATAATTACAAAACTCCATATGATGCAGCTTATTACTACTATGGAACCAGGAATCCATTACATCCTAATCTTCCTTACAATCAGAATGACCTGCCTGGAGGGGTGCAGCAGTCTGGGAATTTCCACAGTCCTCCTCAAAGACCACCTCCTCTCAGACCCAGTGGCCGCACTGAAGCAACTGATCAAGGGTCTCCCCTGGATGTTGGATATCAAAATGCAGACAAGTCCAAGCTGAAGAGAGAGACTGCACTTAGCTACCAAGAAGCACTCAGACTACAGatcaaagaaagagaggagtgtaaaagaagagaaaaagaagagaaggagCGGTATGATGCCAAGATAGAGGCTGAGATGATGGCGTACAACCCCTGGGGGAGAAGTGGGGGAGGCGCTCCAATTAAAGACCAAAAAGGCAACCTTGTTAGTGACCTGAATCAAATGCACAGGACCAACGAGGTGTCAAATAGGAATCCTATGTCCAGGAATAGTGGACAGAACCAAAGCTTTTCGATGAGTAATGGACACAGTCCCAGAGTTGAAGCCAGGGCTCCCATTTCCCATCAACTATCAGGTTTCAATGATCAGCCAACTCCACAGCGGCTCCACATGCAGGACAGATACAAAGAAGAACTGAAACAACAGatagaggaaaaaaagaaaaagctgacagaggaggcagAACGAATGAGGattgaggaggagaaggaagagaagaagcTGGCGGACCAAAGGGCTCGCATACAGCAGGAATTTGAGGAGGAGCAAAGCAAGCGAAAGAAGATTGAGCATAGGCTGCAAAACCAAGAATGGACCCATAAACCTAAAACACAACAccaggaggaggaaaagagggtGAGACAGAAAGAAGAGATTGAGAAGAAGTTACCTGAGAGCGCCAGGGACGGAGAGCAGAAAAAGGCGCAGTTGAGTTATGAGAGAGTGCCATCTCCTCCGATCCCAACCTTGCAGAGGAAGCAGACAAATCTTGAAGTATCCAGACCTTTGTCTGTTGTGAGTCAAGTCTCCGCCAGGACTGAGCGCTCTGTGTCAGCGCCACACTCTCGACCAGTCCCTGCGAAAATACCCCAGCTACAAGATGGTAAGCAGGAAGTGATCAGAGAGCTGTCAGCCCTCCGTAGGTATCTGAGGAACGAGCAGAGACAACTGGAGGTTCAGCTGGACCAGACAGATCGACAGGAGAGTCACTACACTCCCCCCAACAGGCCCAAAAGACGACCTAGAGTGGATGAATCGACGCACAAGCAAGCTGTCCAGCCACCGACCAGGAGTACCTCCTCTGGTGCTGCACGTGTTAATATGCAAAATATCAGGGAGTTTAACCAGCTTAAATACAGAGACACAGCATCTCGTGAGGAGGTCCACCACATGTACCCTGACCCTCCCACTGACGAACAAAGTCTGGACATCCAACAGCAGGCACTTCTTCGCGAACAACAACGCAAAATCAGGCTTATGAAGAGAGCGGAAGAGCATGACTTTTTGGACCACAAACCGAACCACTATCATTCTAGGAAGAAACCTGGACCCTACATCCCCAGAGACTCCATATTGCCATCTGAGACTGCTTTCATTGATGTTTACAGTGGTAAAGCATGTGAAGAGGGGATTCATCAGCAGAGACGGCGTCAGCCCTCAGCAGAGCGCCAGGAGAGGACAGCACCACGGAGGAGACATGAGTATGATGAGGTGGCTGTGTCCATGGATCAGAGGGACCGTAACATCCAACCAGATGCTCAGTCTTTGCAGTCACCGACTAGTTTGAACCTTGATTCTAAAGTCAGGGCCCACAACCAGCAGGGCATCCCAAGAGAGGACACTGGTGATCGCAACAGCAGATCAGAAGGGCTGTCTGATGATGAAGTGGATGTCTTGTCTCTGCGTTCTGCCCTGGAGAGACGTGTCTCCACGGAGACTGTTGCCACAGAGGCCTGGCTGCGGCCCGGCACGTCGGATACTGTAAAACGCTCCGGCTGTAGGGAGAGGCCAAACAGTAGGCTGGACGCTCCACCCTGGCTGACACACCGCGTCCAATAGCTCCTATTAGCTGGTCTTCAAACAGTGAGGCTACTTCTTTGCCAATCCCCCTTTTCTTTGGATGGCTCTCCTGAGAATGAACATCGTTGCATTGTTAATGTGTATGTTAGATTGCATAGTTTCAAAAGCTTGTTAACAAAAACAGTCCGCCCGTAAAAATATCATTGTCGGTTAGTTGAGACAAGAAACATCTTACGACTTTCTCTCAGCATGAAAAGTGCTTTTTTACCCTGCAGTAGATTGTCCATGGAAGTTTTGCAAGGTGCATATCTGTGAATGTACCATAAACATATATACGTGTTTACGCAGTTAGTTTTGTTATAAATATACACCGGAGagtttattttataataaaatgttattttaatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297529 lncRNA downstream 234686 15304311 ~ 15304517 (-) False c22h8orf34
TU297530 lncRNA downstream 235171 15303741 ~ 15304032 (-) False c22h8orf34
TU297422 lncRNA downstream 627730 14909362 ~ 14911473 (-) True G219802
TU297411 lncRNA downstream 665547 14861491 ~ 14873656 (-) True LOC120552749
XR_005638065.1 lncRNA downstream 666769 14861482 ~ 14872434 (-) False LOC120552749
TU297620 lncRNA upstream 212 15553261 ~ 15632850 (-) True G219939
TU297676 lncRNA upstream 101482 15654531 ~ 15655412 (-) True G219982
TU297675 lncRNA upstream 101551 15654600 ~ 15655412 (-) False G219982
TU297686 lncRNA upstream 123210 15676259 ~ 15680853 (-) True mtfr1
XR_005638019.1 lncRNA upstream 148870 15701919 ~ 15702871 (-) False LOC120552505
XM_039789666.1 mRNA downstream 81984 15390675 ~ 15457219 (-) False prex2
XM_039789665.1 mRNA downstream 81985 15360595 ~ 15457218 (-) False prex2
XM_039789663.1 mRNA downstream 81985 15360595 ~ 15457218 (-) True prex2
XM_039789664.1 mRNA downstream 81986 15360595 ~ 15457217 (-) False prex2
XM_039789662.1 mRNA downstream 178887 15302985 ~ 15360316 (-) True c22h8orf34
XM_039790390.1 mRNA upstream 15632 15568681 ~ 15579186 (-) True mcmdc2
XM_039790392.1 mRNA upstream 26324 15579373 ~ 15591567 (-) False sgk3
XM_039790391.1 mRNA upstream 26324 15579373 ~ 15591566 (-) True sgk3
XM_039789488.1 mRNA upstream 56807 15609856 ~ 15613185 (-) True LOC120551907
XM_039790553.1 mRNA upstream 61881 15614930 ~ 15617153 (-) True rrs1
TU297468 other downstream 490540 15046148 ~ 15048663 (-) False xkr9
XR_005637996.1 other downstream 1598822 13824793 ~ 13940381 (-) False sema5a
XR_005637977.1 other downstream 1842462 13688421 ~ 13696741 (-) True pdk3a
TU296891 other downstream 2345162 13189653 ~ 13194041 (-) False bmi1a
TU296313 other downstream 4869676 10577399 ~ 10669527 (-) True G218950
unassigned_transcript_1416 other upstream 92309 15645358 ~ 15645430 (-) True trnaa-agc_30
TU297839 other upstream 415695 15968744 ~ 15973636 (-) False si:ch211-140b10.6
TU297855 other upstream 450830 16003879 ~ 16004764 (-) True G220117
TU297865 other upstream 511621 16064670 ~ 16065221 (-) True G220124
XR_005638013.1 other upstream 713254 16266303 ~ 16284735 (-) False drd3

Expression Profile