RNA id: XM_039790391.1


Basic Information

Item Value
RNA id XM_039790391.1
length 2562
RNA type mRNA
GC content 0.41
exon number 17
gene id sgk3
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 15579373 ~ 15591567 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGGTTGCAGTTGTGAAGTCCCGTGACAAATTTCATTCGAACTTTCTACGGCCAGGAAAGACTGATGTTTTCTGCTTCTCTCACTTACTTGACAGACGCGTATGGACAGCAAGAAACTACACGTTTACTTTGGGGGTTTAGGGGCTTTTGTTACAACAACATTTCATCTGTACTGACAGATGAAATGCTGTAGAGCGAAACATTCTCACTGGACCTAGCTACGGAAATAGATGAACACCACATCAAAATACTGTAAGCAGTGACCCATGATGGCGATGGGCCAGTTGTATACTTGAAGTCTCATCTCGAGGAGGACACGTCACTTTATGACCTTGCACCTTTGAATGCCGGCAGCCCCTAAGATGGAGGAGCAACCCAGTCTCCCCAACGTCAGCATACCCTGCCACAACGAGCAGAGGGACAAGAAAAAGCGTTACACAGTTTATAAAGTGATAGTCAATGTTGGACAACAGGAATGGTTTGTCTTCAGGCGTTATGCAGAGTTTGATAAACTCTACAACACATTAAGGAAACAGTTTCCATCTATGAATTTGAAAATTCCTGCCAAGAGGATATTTGGGGACAATTTTGAACCTGaGTTCATCAAGCAAAGAAGAGCAGGTTTGCATGAGTTCATCAAGCGAATTGTCTCACATCCTCAGCTTTGCAACCAGCCAGACGTGAGGGCCTTTCTACTGATGGACAAAATGCAAAACTTTTCTGATGCCTCTGAGGACGAAGACGACAAAAACAACTCTACCTCCAGAAACATTAACCTGGGACCCTCTGGAAATCCACAtgcCAAGCCCACagactttgactttttaaaagTCATAGGAAAGGGGAGTTTTGGGAAGGTTTTCCTTGCAAAACGAAAACATGATGAAAAGTATTATGCAGTCAAGGTTTTACAGAAAAAGGTCATTCTCAACAGAAAAGAGCAAAAGCACATCATGGCAGAGCGCAACGTACTGCTAAAGAATGTGAAACACCCTTTCCTGGTTGGCCTTCATTATTCCTTCCAGACCACAGACAAGTTATACTTTGTCTTGGATTTCGTCAATGGAGGAGAActTTTCTTCCATCTTCAAAAAGAGCGGACCTTTCCAGAGCCCAGAGCAAAATTCTACATTGCTGAAATTGCAAGTGCACTGGGCTATCTGCACTCTCTCAACATTGTTTACAGAGACTTGAAGCCAGAAAACATCCTCCTTGACCATGAAGGGCATATCATTTTGACAGACTTTGGATTGTGCAAGGAAGGCATTTCCCAGACAGATACCACCACTACATTTTGTGGAACACCTGAGTACTTAGCCCCAGAAGTCCTGAGGAAGCAGCCGTATGATAATACAGTGGACTGGTGGTGTCTGGGGTCAGTGCTGTATGAAATGCTCTTCGGCCTGCCGCCGTTCTACAGCAGGGACACACATGAAATGTATGAAAACATTCTCCACAAACCGTTAGTGATGCGCCCCGGGGCGTCCAGCACAGCCTGGTCTCTTCTCCAGGGCCTACTGGAGAAAGACGGCCCACACAGACTGGGGTCCAGGGAAGACTTTAGTGAGATAAAAGAACACAGCTTCTTCTCCTCCATCAACTGGGATGACCTTGAACAGAAGAAGATCCCTCCCCTATTTATACCGAATGTgAGCTCTTACTGTGACATCACAAACTTCGATCCTGAGTTCACAGATGAGATGGTCCCCAACTCCGTCTGCTGGTCTCAAGACCATTCCATAGTCAACGCCAGTGTAATGGAGGCCGACGACGCCTTTGTGGGCTTCTCTTATGCGCCAGCTTCAGATGACTCTTTCCTATGAAACATTCCCAATGAGGTCTTCAATTGCCTTAACCATCATAACTTCTTTTGACTAAAGGGAAGAATTTATACAATGAATTAACTTGTTCTATGAAGCCAAAGCATTCAGCTGAGACAAAACAGCACTTAACACAGATTTTGGTTGGAACAAAGTTTGCCagaaaatctttattttttaccagtttgtatttatataaatatatatatacataacagATGATATTTTTAAGAACTAAGGACAGCCATCCTCTATTAATGTTATTTCTGGTGGTTTCTAAAAAAGCCTTAAATGTGTCCCTTAAATGAAATCAATTAGCAGTTTTCTGAAAAAACTTGAAGAATTCACTGGACTTAAAATCACACTATTTGACTGTCTGATGGAAGTGTGTTCATCCATGTAATTACTGTAAAAATACACTTATGTATCATCATCGTTTTAACTAAGCTGGAACTAGGGATTACTTGAGAGACCACTGAATAAAGCATTTTGGTTTATAGGTCACATTTGTACAAGAAAAACATGTCTTCTGCTTCTTCAGTTACTTTTCAGTTTGTCTTTAAATATTTAGTGAATCGTtttttgtttagattttttgtatttgtgtttattgttttgcTTTGCCTTATAACATTTATTCATAATTGCAGAAATTAGAAATCCACAATGCTTTGCTTCGTCTGGCAATTAACTAGGCGTATACTCCTGCACTGCAATAATAAAACTAAACTATCAATTAAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007154 cell communication biological_process
GO:0005524 ATP binding molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K13304 SGK3; serum/glucocorticoid-regulated kinase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297529 lncRNA downstream 274856 15304311 ~ 15304517 (-) False c22h8orf34
TU297530 lncRNA downstream 275341 15303741 ~ 15304032 (-) False c22h8orf34
TU297422 lncRNA downstream 667900 14909362 ~ 14911473 (-) True G219802
TU297411 lncRNA downstream 705717 14861491 ~ 14873656 (-) True LOC120552749
XR_005638065.1 lncRNA downstream 706939 14861482 ~ 14872434 (-) False LOC120552749
TU297676 lncRNA upstream 62965 15654531 ~ 15655412 (-) True G219982
TU297675 lncRNA upstream 63034 15654600 ~ 15655412 (-) False G219982
TU297686 lncRNA upstream 84693 15676259 ~ 15680853 (-) True mtfr1
XR_005638019.1 lncRNA upstream 110353 15701919 ~ 15702871 (-) False LOC120552505
TU297694 lncRNA upstream 110353 15701919 ~ 15702904 (-) True LOC120552505
XM_039790390.1 mRNA downstream 187 15568681 ~ 15579186 (-) True mcmdc2
XM_039790386.1 mRNA downstream 26321 15539848 ~ 15553052 (-) False LOC120552366
XM_039790384.1 mRNA downstream 26324 15539203 ~ 15553049 (-) False LOC120552366
XM_039789488.1 mRNA upstream 18290 15609856 ~ 15613185 (-) True LOC120551907
XM_039790553.1 mRNA upstream 23364 15614930 ~ 15617153 (-) True rrs1
XM_039789533.1 mRNA upstream 45284 15636850 ~ 15643929 (-) True trim55b
XM_039790846.1 mRNA upstream 84688 15676254 ~ 15680888 (-) False mtfr1
XM_039790872.1 mRNA upstream 174848 15766414 ~ 15768587 (-) True bhlhe22
XR_005637989.1 other downstream 26319 15539634 ~ 15553054 (-) False LOC120552366
unassigned_transcript_1415 other downstream 27681 15551620 ~ 15551692 (-) True trnar-ccg_2
TU297468 other downstream 530710 15046148 ~ 15048663 (-) False xkr9
XR_005637996.1 other downstream 1638992 13824793 ~ 13940381 (-) False sema5a
XR_005637977.1 other downstream 1882632 13688421 ~ 13696741 (-) True pdk3a
unassigned_transcript_1416 other upstream 53792 15645358 ~ 15645430 (-) True trnaa-agc_30
TU297839 other upstream 377178 15968744 ~ 15973636 (-) False si:ch211-140b10.6
TU297855 other upstream 412313 16003879 ~ 16004764 (-) True G220117
TU297865 other upstream 473104 16064670 ~ 16065221 (-) True G220124
XR_005638013.1 other upstream 674737 16266303 ~ 16284735 (-) False drd3

Expression Profile