RNA id: XM_039790457.1


Basic Information

Item Value
RNA id XM_039790457.1
length 3779
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC120552403
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25414884 ~ 25427197 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACCCTGAAACTGAAAGTTGTTCAGTCAGTTAAGAATTCATTTTGAGTGGACCACGGAGCAGGAGGAGGGAAACTACAGGCCGAGGCAGGAATGACTTCAGATCAGGAGATGAGTGattcagaggaagaggaggatggagcAGAGTCTCCAGTATCCGGCTGTCTGTCTTTGAAGTCCAAAGAACCTCCTCTACTCTTCAGTAATgaacctggaccctcagacacaaaaaagaggaaaatgaGTGATGTCtctgaggaggagcagcagcccaGATCCAAAACCAGAGCTGGACTACAGACAGCCAGTCAGACCTGCACTGTACAAATGAATGGTAGTCAGCATGAACATAAGATCAGTGTGAAGAGGACATGTGAACGCGTTTCTGAAGGACCTGgtcaaacaggaagtggaacatcCCTCAACAGGATCTACATTGCGCTCTACATCACAGACGGATGGAGTGAAGAGGTTAACACCCAACATGAGGTTTGGCAGCTTGAGATAGATTCCAAGATGGAGACCCTCCATGAAACTCCAATCAAGTGCAGTGACATCTTTGAAGCCTTACGTGACCAACAGAAACGCATCAGAGTCGTCCTGACGATCGGCGTTGCTGGCGTTGGAAAAACCTTTTCAGTGCAGAAGTTCTCTCTGGACTGGGCCGAGGGTTTGGAAAACCAAGATATCAGTCTGGTGATCCCTCTTTCGTTCAGGGAGCTGAACTTGATCAAAGATGAGCAGTACAGTCTTCTCGAGCTGCTCAGAGTTTTCCATCCAACGTTGCAGAAGGTCACAGCCGAGCAGCTCACTGACTCTAAAGTTCTCTTCATCTTCGACGGCCTGGATGAAAGCAGACTTTCATTGGATTTCATTAACAATGAGGTTGTTTCTGATGTCATACAGAAGTCATCAGTCAACGCGCTGTTGACAAACCTCATCGAGGGGAAGCTGCTTCCCTCGGCTCTCGTCTGGATAACTTCCCGACCTGCGGCAGCCAATCGGATCCCTCCTGCGTGTGTTGACAGGGTAACAGAAGTACGAGGCTTCACTGACgcccagaaggaggagtacttcaggaagagagtcagtgatgaagagctgtccagcagaatcatctcccacattaAGACATCCAggagcctccacatcatgtgtctgatcccagtcttctgctggatcactgctacagttctggaccaCATGTTGGCTACAGACCagagaggagagctgcccaataCCCTGACTGACATGTACGCACACTTCCTGCTGGTTCAGACAAAGAGGAAGATGCAGAAGTATGATGAGGAACACGACACGAGTCCACGAGAACTGAAGAAGACCGACAGGGAAGTTCTTCTGAAGCTGGGAAGGCTGGCGTTTGAACAGCTGGAGAAAGGAAACATCATGTTCTACCAAGAAGACCTGGAGCGCTGTGGTCTGGATGTCACAGAGGCCTCGGTGTATTCAGGAGTTTGTACAGAGATCTTCAAAAGGGAGAGTGTGATCTTCCAGAAAACAGTCTACTGCTTTGttcatctgagtgttcaggagtttctggctgctgtctACTTCTACCACTGTTACACCAACAGGAACACAGAGGTACTGGAGAACTTTCTGGGGAAAGGCTGGAAATCCCAGAAGAGTTCCTTATACCTGCATAGTGATTCTTACCTGACTGAGGATGATACTGATGGTGACACTGACTCATCTCTGGATGTCTTCCTAAAGAAAGCCATGGAGAAATCCCTGAAGATTAAAAATGGCCACCTGGACCTGTTTGTCCGTTTCCTTCATGGCCTCTCTCTGGAGTCCAACCAGAGACTCTTAGGAGGCctgctgggtcagacagacaacagtccAGAAATCATCCAGAGAGCCATCAACAACCTGAAGGAAATGAAGATGTACGAGGTCTCTCCTGACAGAAGCATCAACATCTTTCACTGTCTGATGGAGATGAACGACAGCTCAGTCCATCAGGAGATCCAAGAGTTCCTGAAGTCAGAGAACAGATCAGAGAAGAAACTCTCTATGATTGACTGTTCAGCTCTGGCCTACATGCTGCAGATGTCAGAGGAGGTTCTGGATGAGTTGAACCTGCAGAAGTACAACACATCAGAGGAGGGACGACagagactgattccagctgtgaGGAACTGCAGAAGAGCTATACTTTCTCGCTGTCTACTCTCTGAGATTCATTGTGAAGTCATTgcctcagctctgaagtccaacccctcccatctgagagagctgaaCCTGACTGACAACaagctgcaggattcaggagtaaAGCAGCTGTGTGCTGGATTGAAGAGTCAacactgtagactggagactctgagattgAGGGGCTGCagtttgtcagagatcagctgtgcttctctggcctcagctctgaagtccaacccctcccatttgaaagagctggacctgagagACAACaagctgcaggattcaggagtgaaaaAGCTGTGTTATTTTTTTGAGAGTCAGCATTGTAGACTGGAGACCCTGAGATTGATGGACTGCAGTTTGTCAGAAAGCAGCTGTACTTCTCTGGCTTCAGCTCTGAAGTcttcccatctgagagagctgcaGCTGAGAGACAACAACCTGAAGGATTCAGGAgtaaagctgctgtgtggtttTCTGGAGAATCCACACTGTAAACTGGAGACTCTGAGATTGATGGACTGCGGTTTGACCAAGATCAGCTGCAATTCTCTGGCCTCCgctctgaagtccaacccctcccatttGAGGGAGCTGCAATTGAGAGACAACAAGCTGAAGGATTCAGACGTAAAGCTGCTGTGTGATCTTGTGGAGAGTCCacactgtagactggagactctgagaTGGAAGTGGACTCACTAAGAGCGATCAGGAATGAGGATGTGTTGAGACACGATGTGGAGTCCACCATCATCCCTGTGTATCCCTCTGGATCTGGACTGCTCTGCTGCTTCTCTGTCCTTCCACACAGTCTCTGCAGACACACTGGGACTCCTCCACTCCTTTTGCTCCACACTCTGCAACCACCTCTTCCACCCTCCACCTGGACCTGGGTTTCATTTTCTCCTTATTCATTCAAATATTCTGAACCCAAAGTGCGTCTGCAGATTAATTCTGTTCATGACAACAACTGTAGATTaacacagtggttcccaaagtggggtccCCAGACCAGAGGTCCTTGAGTGTGTTGAAGGGGTCCACAGCGAAAAGGGGCATCCTTTTTTCATTAACATCttcactataattccatccataagtaacacaattaCAGAATGTATGACCATTTTAgtcatgggtttcatacactttctgtaatgaaacatctaaaagcaaaaatcctataACATGAGGAACCCTGGGACGGAATTGTATCATAATATATAATCGGGGCCTGTTGTCTAATTTGTGTAAGTTTAGGGGTCCATCAGGTGAAAAAGCTTTGCCTTCTGTTGGAGCTCCACCCTGTGGAACAATGGAGCATTGCAGTTAATTCCCACATATTTCTTAATAACAACAGGAGTTGATTTTGGACACATAAAGTTACCTTATACTAACACCAGCCATTTCTCAGATAATAACGTAAATATTTGCttgtaacaaacaaacaaacaaacagaagatAAAACCTGAATTAAATCAAAGCTTCACTGAAGTTTCTCAACTCACTACAGACAGATTATGTCTGGACTCTGTCGGGAAATCAGCAccttatgttttattttgtatatgatGTTAATGTAAACTGATTAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302093 lncRNA downstream 21846 25347574 ~ 25393038 (-) False LOC120552443
XR_005638004.1 lncRNA downstream 26735 25382543 ~ 25388149 (-) True LOC120552442
TU302061 lncRNA downstream 29263 25316612 ~ 25385621 (-) True G223206
XR_005638000.1 lncRNA downstream 39383 25358648 ~ 25375501 (-) True LOC120552439
XR_005638006.1 lncRNA downstream 57914 25347787 ~ 25356970 (-) False LOC120552443
TU302129 lncRNA upstream 44523 25471720 ~ 25541442 (-) True G223252
XR_005637983.1 lncRNA upstream 129389 25556586 ~ 25562436 (-) False LOC120552299
TU302157 lncRNA upstream 151102 25578299 ~ 25582204 (-) True G223265
TU302163 lncRNA upstream 177073 25604270 ~ 25604783 (-) True G223269
TU302169 lncRNA upstream 209257 25636454 ~ 25637238 (-) True G223270
XM_039789467.1 mRNA downstream 185340 25199062 ~ 25229544 (-) True LOC120551896
XM_039789468.1 mRNA downstream 185867 25199062 ~ 25229017 (-) False LOC120551896
XM_039790538.1 mRNA downstream 217351 25182212 ~ 25197533 (-) True LOC120552454
XM_039790541.1 mRNA downstream 219606 25182212 ~ 25195278 (-) False LOC120552454
XM_039790540.1 mRNA downstream 220657 25182212 ~ 25194227 (-) False LOC120552454
XM_039790462.1 mRNA upstream 2041 25429238 ~ 25437142 (-) True chrnd
XM_039790460.1 mRNA upstream 11957 25439154 ~ 25461021 (-) True cip2a
XM_039790885.1 mRNA upstream 39136 25466333 ~ 25488648 (-) True si:ch73-264p11.1
XM_039790212.1 mRNA upstream 77942 25505139 ~ 25523582 (-) False zgc:112982
XM_039790211.1 mRNA upstream 81426 25508623 ~ 25527126 (-) False zgc:112982
TU302014 other downstream 328176 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 446894 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 3196518 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 3197335 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 3405796 21990017 ~ 22009088 (-) True tfr1b
TU302146 other upstream 129276 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 303559 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 400894 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 400894 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 556397 25983594 ~ 25993497 (-) False G223331

Expression Profile