RNA id: XM_039790462.1


Basic Information

Item Value
RNA id XM_039790462.1
length 1771
RNA type mRNA
GC content 0.51
exon number 12
gene id chrnd
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25429238 ~ 25437142 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAAGCTTCAGGGTGCAGCACTGAGCACCGTGTTCCTGCTCGCTCTGCTCTCATCTGagtgctGGGGCAGGAATGAGGAGGAGCGTCTGATCAACTACCTGATAAAAGAGAAAGGATACAACAAAGAGCTGCGTCCCGTTGAGAAGCAGCAGGAAGCCGTCGACGTTTACCTCGCACTCACACTCTCTAACCTCATCTCTCTGAAAGAAGTCGACGAGACTCTGCTGACCAACGTATGGATAGAGCACACTTGGACAGACTACCGGCTGTCGTGGAATATGACAGAGTTTGACGGCATCGATATACTTCGTCTGCCGACCAACATGGTTTGGCTGCCAGAGATTGTGTTAGAAAACAAtAACGACGCCCAGTTCCAGGTGGCCTACTACTGTAACGTACTGGTGTATTCTACTGGTCTCTGCTACTGGTTACCTCCCGCCATCTTCCGCTCCTCTTGCTCCATCAACGTCAACTACTTCCCATTCGACTGGCAGAACTGCACGCTCAAATTCACCTCTCTGACCTACAACGCCAAAGAGATCAGGATGCTGCTGAAGGAAGAAGAGGACGAAACCAGCAAATGGACGGTGGAGTGGATCATCATTGACCCTGCTAGCTTTACAGAGAACGGTGAGTGGGAGATCATCCACCGACCAGCCAAGAGAAACACCTACAAGCACATTCCCATGGAGAGCAACAAGCACCAGGACATCACCTTCTACCTGGTCATCAAACGCAAACCTCTCTTCTACATCGTCAACATCATCATTCCCTGTGTGCTCATCTCCTTCCTGGCCTCGCTCGTCTACTACCTGCCCGCTGACAgtggtgaGAAGATGACTTTGTCCATCTCAGTGCTGCTGGCTCAGTCTGTCTTCCTGCTGCTGATCTCTCAAAGGCTGCCGGAGACTTCCATGTCTGTTCCACTTATTGTCAAATATTTGATGTTCATCATGGTGTTGGTGACGATCGTGGTGTTGAACTGTGTGGTTGTCCTGAACCTGCACTTCAGGACACCGAGCACACACGTCATGTCAGACTGGACCAAGAGgTTCTTCCTCGAGCGGCTGCCCCGCATCCTGCGTATGTCCCAGCCCTCAGAGCCGGAGCCTTACTGGGACGGAGCGTTGCCAAGGCGATCCAGCTCGGTGGGCTACATCGCCTCGGCGGAGGAGTACTACAGCGTCAAGTCCCGCAGTGAGCTGATGTTTGAGAAACAGTCGGAGAGGCACGGACTGACGGCACGAGCCACACACGCAGCAATTGTAAAGCCGCAGGAAGACGGGGGGGTGACGGATCAGCTGTATGCGGAGATCAAGCCGGCTGTGGACGGAGCAAACTACATCATCAAACACATGCACCACAAGAACGACTACAACGAGGAGAAAGATAACTGGAGCGGCATTGCTCGTACGGTGGACCGCCTCTGTCTCTTCCTGGTTACCCCGGTGATGACCATCGGCACCATCATCATCTTCCTGATGGGAATCTGTAACCACCCTCCACACCTGCCCTTTAAAGGAGACCCGCACGACTACAGCGAGGAAACCCCACGCctgctgtgacacacacacgcgcacacacacgcacacacacacaacacacacacacacacactgctttgttgctttttaattatttttgtttgacAACCAGGtacatggatgtgtgtgttttttcttcacTTAAATTTGAAGTGAATAACTAAATCAGTATAATGCTATTTCAATTATATTTGTGTGGTTTGAATAAACATTTACACTCCGCAGA

Function

GO: NA

KEGG:

id description
K04816 CHRND; nicotinic acetylcholine receptor delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302093 lncRNA downstream 36200 25347574 ~ 25393038 (-) False LOC120552443
XR_005638004.1 lncRNA downstream 41089 25382543 ~ 25388149 (-) True LOC120552442
TU302061 lncRNA downstream 43617 25316612 ~ 25385621 (-) True G223206
XR_005638000.1 lncRNA downstream 53737 25358648 ~ 25375501 (-) True LOC120552439
XR_005638006.1 lncRNA downstream 72268 25347787 ~ 25356970 (-) False LOC120552443
TU302129 lncRNA upstream 34578 25471720 ~ 25541442 (-) True G223252
XR_005637983.1 lncRNA upstream 119444 25556586 ~ 25562436 (-) False LOC120552299
TU302157 lncRNA upstream 141157 25578299 ~ 25582204 (-) True G223265
TU302163 lncRNA upstream 167128 25604270 ~ 25604783 (-) True G223269
TU302169 lncRNA upstream 199312 25636454 ~ 25637238 (-) True G223270
XM_039790459.1 mRNA downstream 2041 25414884 ~ 25427197 (-) False LOC120552403
XM_039790458.1 mRNA downstream 2041 25414884 ~ 25427197 (-) False LOC120552403
XM_039790457.1 mRNA downstream 2041 25414884 ~ 25427197 (-) True LOC120552403
XM_039789467.1 mRNA downstream 199694 25199062 ~ 25229544 (-) True LOC120551896
XM_039789468.1 mRNA downstream 200221 25199062 ~ 25229017 (-) False LOC120551896
XM_039790460.1 mRNA upstream 2012 25439154 ~ 25461021 (-) True cip2a
XM_039790885.1 mRNA upstream 29191 25466333 ~ 25488648 (-) True si:ch73-264p11.1
XM_039790212.1 mRNA upstream 67997 25505139 ~ 25523582 (-) False zgc:112982
XM_039790211.1 mRNA upstream 71481 25508623 ~ 25527126 (-) False zgc:112982
XM_039790210.1 mRNA upstream 71481 25508623 ~ 25527126 (-) True zgc:112982
TU302014 other downstream 342530 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 461248 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 3210872 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 3211689 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 3420150 21990017 ~ 22009088 (-) True tfr1b
TU302146 other upstream 119331 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 293614 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 390949 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 390949 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 546452 25983594 ~ 25993497 (-) False G223331

Expression Profile