RNA id: XR_005637996.1


Basic Information

Item Value
RNA id XR_005637996.1
length 4082
RNA type transcript
GC content 0.56
exon number 23
gene id sema5a
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 13823458 ~ 13940381 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGCTGGAGTGGACGCGCGAAGTGTTTGCGCACTCCTCAGCCATCCAAAACCCTGCTCGTGAGATGCGCAGCTGTGGCTGAGAGCAGCATTGGACCCATTTCCCACCTCCGATCCGCttggtttttttgtgtgcacaaGATCTCACTGTTTTACTTGAAGGACAGTTTTGTTTTGCGCCGTTGCTTTTTGGCACCcgcgccccccacccccctcaagAGCGGAGGCACATTGTCTGTGGCGCAGCGCGACAGTGCGGTGTCCGATTACAAACCACCGAGGAGCCATCGGCAAAGAGTGTTTCTCTGTGGGGCAGAAATAGCACGCAGGACTCCGGagggacgagagagagagagcacagaggaaTCTCTGCAGAGAAAGGAGTTTTACTGAGGTCGATTTCTGGCAAGAGACGCAACAGAACGGAGGATATATCATCTTCAGCtcatctttattttttgtttctccATACCACTCTTCTCACCGGGACAAGACACGCAGCTTCGCTCCCTACTAGATGAACGGGAATTGGGCACCTCACTTGGTGTGTCTCTCCAATGCTCTTGGTCCCTGAGGCCTGAGGAGAAGTGAGCTAAACCCAAGCCCCCATGGGACGCCctgttacccagcatgcactgctgctgctgcagtgcaTGCTGGTCCTGCGGCCCGGAGGCGTGGCCAGTAGGAGAGGGCCGGTGCTGCTGCCTGAATCACCTTGTCACAAGACAGAGCACCCGCTCATCCCACACTCAGCGATGGAGCCATGGATCTTCAGGTTCAAAGCAGAAGGCACGGTGGATTACTCACAGCTGACCTTCGACCCTGGCCAGAACGAACTGATCGTCGGTGCCAGaaatcaCCTCTTCAGACTGAATCTTGAAGACCTTACACTGATCCAGGAGGCTGAGTGGCACTGCGATGAGTTCACCAAGGGAGCCTGCTTCAGCCGTGGAAAGTCTGAGGAGGAGTGCCAGAACTACATCAGGGTGCTGTTGGTGAATGGGAACAGGTTGTTCACCTGTGGAACCAATGCCTTCACCCCCATCTGCACCAACCGAACGCTGACAAATTTGACAGAGATCCACGATCAGATCAGCGGGATGGCTCGGTGTCCCTACAACCCCCTCCACAACTCCACTGCCCTGATCACCTCCAGCGGGGAGCTTTACGCTGCCACGGCCATGGACTTCTCTGGGCGAGACCCCGCCATCTACCGCAGCCTGGGTGGCCTGCCACCGCTGCGCACTGCCCAGTACAACTCCAAGTGGCTGAACGAGCCAAACTTTGTCTCCTCCTACGATATCGGCAACTTCACCTACTTCTTCTTCCGGGAAAACGCAGTGGAGCATGACTGTGGCCGGACGGTATTTTCCCGCGCAGGGCGTGTATGTAAGAACGACATCGGCGGTCGCTTCCTCCTGGAGGACACGTGGACCACCTTCATGAAGGCCAGGCTGAACTGCTCTCGACCGGGGGAAATCCCCTTCAACTACAACGAGCTGCAGGGAACGTTTTACCTGCCTGAGCTGGAGCTGCTCTACGGTATTTTCACTACCAACGTAAACAGCATTGCTGCGTCTGCGGTGTGTGCCTTCAATCTCAGTGCCATATCACAGGTTTTCAACGGGCCCTTCAAGTACCAGGAGAACTCACGGTCAGCATGGCTGCCctaccccaaccctaacccagaCTTTCAGTGCGGCACCATTGACTCTGGCTCCTATGTGAACCTGACTGAAAGAAACCTGCAGGACGCTCAGAAGTTTTTGCTGATGCATGAGGTGGTCCAACCCGTGGTTCCCGTGCCCTACTTCATGGAGGACAACGTGCGCTTCACTCATGTGGCAGTGGATGTGGTGCAGGGGAAAGACATGCTGTTTCACATCATATACTTAGCTACTGATTATGGTACTATCAGGAAAGTGCTTTCCCCTCTCAATCAGTCCACAGGGAGCTGCCTATTGGAGGAGATTGAGTTGTTCCCACCCAGGAAGAGACAGCCGATCCGAAGCCTGCTGATTCTGCACAGCCGCAGCGAGCTTTATGTGGGTGTTAGAGACCAGGTCATCAAGATCCCACTGAAGAGATGCAGCTACCACAAGAGCAGAGAAGCCTGTGTGGGAGCCAGGGACCCATACTGTGGTTGGGACCTGCTATTGAAGAAGTGTACCACGCTGGAGGAAAGTGTCAGGATGAGTCAATGGGAGCAGAGCATCACAAAATGCCCTATCCGTAATGTGACTGTTGATGGAGGCTTTGGTGCCTGGTCAGGCTGGTCCACATGTAGTCATAGCGACGGAGGCAGCGCGGGGTCCTGTCTGTGTCGGACACGAGCCTGTGATAACCCCGCTCCTCAGTGTGGGGGCCAGCATTGTTATGGCATAAGTGTGGAGGTCGCCAACTGCTCCAGAAACGGGGCGTGGACTCCCTGGACTTCCTGGTCTCCCTGCAGCACCAGCTGCGGCATCGGCTTCCAGGTCCGTCAACGCTCCTGCAGCAACCCGACCCCTCGCCATGGTGGACGAGTGTGTGTGGGCCAGAACCGCGAGGAAAGATACTGTAATGAACACCTGCCCTGCCCACCGCATGTTTACTGGTCGGCCTGGTCGGCATGGGAACGCTGCACCGTGCCTTGTGGTGGAGGGTTCCAGTCACGACGTAGAACCTGTGAGAACGGCAACGACTGTCCCGGGTGTGGTCAGGAGTACCAGTCATGCAACACCCTGCCATGTCCTGACCTAAAGAAGACCACACCCTGGACTCCCTGGACGCCCGTCAACATCTCCGACAACGGTGGGCACTATGAGCAGCGTTTCCGCTACACTTGCAAAGCTCGCATCCCAGATCCCAGCCTGCTAGAAGTAGGCAGGCAGAGGATCGAGATGCGCTACTGCTCCAGCGACGGATCCACCGGCTGCTCCACTGATGGAGAGGTGCTTCGTCTCGGGAGGATATCAGGCCACACGGTGAACGGTGGCTGGTCATCCTGGAGTTCCTGGTCCCAGTGCAGCAGAGACTGCAGCCGGGGAATCCGCAGCCGGAAGAGGACTTGCAGTAACCCAGAGCCTAAGTACGGAGGTCAGACCTGCCTGGGGCCAGCACAGGAGTATCAGGAGTGTAACATCACCCCTTGTCCAGTGGATGGCAGCTGGTCATGCTGGTCTTCATGGTCCAAGTGTTCTGTGACGTGTGGAGGGGGACACTACATGAGGACGCGCACCTGCAGCAACCCTTCGCCGGCTTACGGAGGGGACATATGCCTGGGCCTGCACACTGAGGAGGCACTGTGCAACACACAAGCCTgtccagAGAGCTGGTCCAGCTGGTCGGAGTGGTCCCGCTGTGACTCCAACGGCGCCCAGATGCGTGTACGTCACTGTGATGTCCTGTTTCCCACTGGAAACCAGTGCTCAGGAAACAACAGCGAGACAAGGCCATGCTCCCCTGACTCCAATTTAATACCagAAGTCTCCATTGCACGCTCAAGTCAGGAGGAAAGGCACTGTGGagACTTCAACCTCTTCCACATGATCGCCGTGGGGCTCAGCAGCTCCATCCTCGGCTGTCTGGTTACCCTGCTGGTCTACTCGTACTGCCAGCGCTACCAGCAGCAGTCGCACGACGCCACCGTCATCCACCCCATTTCAGCCGCACCGCTCAACACCAGCATCACCAACCACATCAACAAACTGGACAAATACGACTCGGTGGAAGCCATCAAGCCAGATGTGTCGGTACTCTTGCCTTTGGACGACCCCGCCATGCACCAGCCTCTCTCTGCTAACATGGGGGTGTCCATGCGTGGCCTGGAGATTTTCTACTAACCTCTGACCTCTACAACATCTCGCCTATTGACCCCCTACCCAACAACTCTTTGACCTTAAGCACTACTACTTCCTCTTCCCCACCGTGTCCCGCCCTACCACTTCCAGTGGCACTTCCTGTCTGTGGCAGGCCTTCAACAAAAACAATCTGATTCTGGAGGAAAGAAATAAGTACTTCAACCCACAGCTTGCCGGAAAGACATATACCAACGCATATTTCACCGACCTCAACACCTACGATGACTATTAAGCCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297152 lncRNA downstream 35942 13788401 ~ 13788851 (-) True G219581
TU297149 lncRNA downstream 41296 13783046 ~ 13783497 (-) True G219578
TU297127 lncRNA downstream 140320 13684072 ~ 13684473 (-) True G219560
TU297027 lncRNA downstream 249341 13571293 ~ 13575452 (-) True G219494
TU297024 lncRNA downstream 378209 13445992 ~ 13446584 (-) True G219492
TU297206 lncRNA upstream 46174 13986555 ~ 13987017 (-) False neto1l
TU297245 lncRNA upstream 249563 14189944 ~ 14190374 (-) True G219662
TU297249 lncRNA upstream 312602 14252983 ~ 14254190 (-) True G219666
TU297357 lncRNA upstream 616969 14557350 ~ 14560039 (-) True G219752
TU297355 lncRNA upstream 625941 14566322 ~ 14626213 (-) True G219751
XM_039789768.1 mRNA downstream 71810 13747553 ~ 13752983 (-) True cct5
XM_039790071.1 mRNA downstream 82080 13729829 ~ 13742713 (-) True LOC120552228
XM_039790072.1 mRNA downstream 82081 13729829 ~ 13742712 (-) False LOC120552228
XM_039790076.1 mRNA downstream 95821 13719250 ~ 13728972 (-) False LOC120552230
XM_039790074.1 mRNA downstream 95821 13719250 ~ 13728972 (-) True LOC120552230
XM_039789723.1 mRNA upstream 16492 13956873 ~ 13970727 (-) True si:dkey-118j18.2
XM_039789722.1 mRNA upstream 31264 13971645 ~ 13974562 (-) True timm21
XM_039789727.1 mRNA upstream 37021 13977402 ~ 13979215 (-) True LOC120552066
XM_039789726.1 mRNA upstream 40806 13981187 ~ 13983286 (-) False LOC120552065
XM_039789724.1 mRNA upstream 40806 13981187 ~ 13983286 (-) True LOC120552065
XR_005637977.1 other downstream 128052 13688421 ~ 13696741 (-) True pdk3a
TU296891 other downstream 630752 13189653 ~ 13194041 (-) False bmi1a
TU296313 other downstream 3155266 10577399 ~ 10669527 (-) True G218950
TU295702 other downstream 5393863 8430464 ~ 8430930 (-) True G218471
TU295672 other downstream 5628914 8194929 ~ 8195879 (-) True G218453
TU297468 other upstream 1105767 15046148 ~ 15048663 (-) False xkr9
XR_005637989.1 other upstream 1599253 15539634 ~ 15553054 (-) False LOC120552366
unassigned_transcript_1415 other upstream 1611239 15551620 ~ 15551692 (-) True trnar-ccg_2
unassigned_transcript_1416 other upstream 1704977 15645358 ~ 15645430 (-) True trnaa-agc_30
TU297839 other upstream 2028363 15968744 ~ 15973636 (-) False si:ch211-140b10.6

Expression Profile