RNA id: XM_039790541.1


Basic Information

Item Value
RNA id XM_039790541.1
length 5977
RNA type mRNA
GC content 0.53
exon number 16
gene id LOC120552454
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25182212 ~ 25197533 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGGTGACCATCGACAGCGGCAGCACTCGTCCCGTTGAGTTGTCCTCGAGCCCGATTCACATGACGTCAGACCAGAATCCACTGTATCCAGCTGATCTACAGGTGCCGCTAACGCACGGAGCGCTGGGTCCAGGATACTACTACTTCTACCAGGCCGGAGAAGATGGGGTGCTGCTTTAGTAAAGAGCTCAACCCCGGCCAGCAGAGCGAGAGGAGCAGTCTGTTACAGCCCCCGCTCCACAATGGGCTGAATGACGTGACAGACCAGGTCAGGCAACACGCTGCGGCTGTAGCTCAGCATGTGTGCTTGGACGAAGAGGAAAAACGTGTGGCAGACAGACCGGCCCAGAGAAAGCCTGCGGAAGATGAGGAAAGACCACCAGAACTGGGCAACAAAGTTTGGACAGAGGCGGCCGTGGCATGCGGGGACAGCACCACGCGGAGTGAGAGGGATCTTAAAGCAGCCAGCACTCACGACGAGAAGGGGGCTATAATTATCACAACCAgcaaaaacatacatacaaccGCGGAGACTGAGGTAGGCATGACACATACTGGCATGCCCAGCTGTGGCCCGGCCCCGTATATGGAGGTGCCCACACGGAGTCCAGCCAAACAGAAGATTGTGGAGAATGCCACACTCAGGGCTTTATGGTTCAATCAGCTCCCAGACAGGCACCCGTCGAAAAAATGTTGGTCATCTCCCGCCAGGTTACCCTCTGCTAACTGCCAGGGCAACGTCACAGGGAGCGAGGCGTCCGATAACCAGCTGCCGCTGGTCAGCGAGTGTCGGGAGACACGGTGGGATTACCCCAAAGCTGAGCACAACGAGGAGGAAGGTGAGGACGTCTGCGTCGTCGCGACGACGCTGGGTCAAGGTTTCGAAACGAGGACCCGGAGCTTCTACAGCATATGTTCCATCGACGCCGACGACCTTGAACATGACCACGTCCACAGCCAATCCCAAACAGCTGGAGCAACACACTCGCTGCGCACAGCTGAAGCAGAAACAGCTGCTCTGCCCTGCGTAGCGGAGTCTCTGGCCTCCGGCCAATCGCACACACAGGCATCCACAGCCTGCGGCCAGGAATATGTCCCAGAATCTAAAACGACCAGCCAGTCGCGTGATGAGGAACCAGCTTCGAGTCATCAGTCTTCCACCATCctgtcacagacacacccagagaATTCACTCCCAGCAGAGGAGACCTCCTTACCTCATCCCGTTGTAAAGCAGGTTGACCCTTTGTCTGACTCGCTGCCCCTGCCCAGCAGTCAAATAAACCGCGAGGAACCTCGGGCCTCCACGCCAGACGGGACTCCGTTTAAAGATCTGGACTGccagaccgctgctaaggaaACGCATGAATCCATGTATTACATGTTGATGACGTCGCACGCAAATGAAAGTGCACGTGTTGAGGAGGAGAGTAAACGTGAGGCATCCAGCTCCAGTTCTTCAAAGCTCAAACCGCTGCACGGGGATGAGGTTGTCTTTCCTCTGTCTGGAGGACAGTTTGAGATGGATAAATCCTCGCTACAGAGGGAGGCTATCCCCTTGAGGATCTGCAGAGGCCACAGTGAGGAGGGGGACGTCGGTTACAGCGGCACAGCAGGTACGACTCTCACTGAGGTGTCCTCGGTTCCCACCATCTCAGCTGTGTCATCGCTGCCCATTGAACTGACGGCCTTCTCCTGCCGCACACATCTGACTCCTCTCTCAGACTTTAAAACCACATCTCACCAGTGTGACTTCATAATATCCGACAAATTAGATGTAAATTCAAACGATCCAACATTTGAATTGAGCAGCATTAAGCCTCCTGGTCAAGATGTTGTAGATCCACCCGAGTTGGACCATAGCGACGACCGTGACGAGCCTCTTCAGGATGTCCTCATGAGTGGTGATGACAGACAGGCAGCCAAAGAACCAAAACCGGAAGTCTGTCAGAACGGCAAACCCGTTGAGAGGGGGGATGTTACAGATGTTTTACCTGAAACAGCTCCGAACACCTCTCGCCCAGATACAAGCACGGCTGTAAATGCAAGCCTCGCTCTTCACGGCCCGGAAGATTTAAGTCTCGGGCCTCTCACGCGGCCTCCTCCTGCTGAAAGTGAGCTTTCTGTTACTGCTTCCTTCACTCCacctccctcttcctcatctCCGTGCACACCTCCTGTGGAAGGTAAGCATAGTTTCTGTCCAGAGACTGAAGCTAATCCTACCGAGAGGGAATGCAGACAAATCCAACAGGAGGAAAATCCACCAGAGAAAGTATTTATTCATGCGTGTGAGGAAGGAGTGGACGCAGCAGCTGCACAGGGGACTCGGATTGATGCCCCAGTCAAGCATGAATCTGCAGATACAGTAGAACAGCCTCAAACAGCCTCCGAACCCCCGGTAATATTAAGCTCCAGCGTTTCCTCTGACGTCGACATCGGCCTGCCAAATGACACTGCTGAATGTTTCCCTCAAGCTGGAGATTCATCAAATGAAATTCATTTCGAGGAAATCACTGGAATACAGGTTCACATCTCACAGGGGGAGATGTCTGCACTTGACAGTGATATTCCTCCAGAAACTCCAAATATTTCCGAGGTCGGCACCGGCATCTGCGATGACTCCTATGTGATTCCTGATGACTTCAGCTGTCCGGGTGGCGATGCATCCTCGGTTTTGGACTGCCAGGAGGACATGATCCCTGTGGACCCAGGGCAGGTTGATGTTTATGCCTCAACTCCGTCATACGAGATTCACTTCCTGGGACGCGAGCCTCCCGCTACtgccgaggagggggagagagaaggagggatgagGGAGATGGTGTCCGAGCTGCTGGGAGAGGACGCGGACTCCTCCGTCTGCCAGCTCTATCCCCACCCCTGGATCAAACTGGGTCTGGAGGATAGCTGCGGGGCGTGGGCCCAGGGCGCGTCTGATGCCGAGCCCAGCCAGGGCGAGAGCAGGACGGGCGCCGACGTAGAGCAGATCCCAGCCCTGGTCTCGGAGCTCCAGCCGTCTATGGCTCTGCTGGGAGCTTACCCCTACAGCACAGTGATGCCTCAGGGACGCTGCGTGTGGGACTGGCACACAGATTGCACTCAGTCTgaACCTGTTGCTGCCCCAAGCCTTAACCCTAACGCTGAGGTATGGACCAATCACAACTTCAACTTGGACGTCCCTGGCCCCGCCTTCCTGCAGGCTCATGAGCCATGGCTGCAATTCCCCAGCGATCTGACCAATCAGGAAGgataCGAGCCAGAGTTCCAGCTGGAGAACGTGGGCCTGGCTGAGGCTGTGGTTGAAGCAGATCCCAGCACACCAGAGTACCAGACGCTGTCTGCCGAAGCTTCAGTAGTTCATGGAGAGCCCATTGACCCACCTGTTACAGATGAGACTAGAGAAGAGCTGAGGACCGTTTTGGAGTCCTGCCTGACCAGGGAGCACCTTGGCAACGACCTGTACCTGAATTCTCAGATGGACAGCGACCAGTATGTTCCCATCGCAACTCTGGCCAGCCTCGACAAGATCAAGAGGATCAGCACGGACCTGGACCTCATCGCCGACATTTTGAAATCCCTGCCGCTGGTCCAGGTGGCTCTTTGTGGACAGAAGGTCCGGCCCAGTCAGAGTCGATGTGTCGTCATCCTGCGTGAGATCCCCGACACCACACCCAAGGAGGAGGTGGAGGCTCTCTTTGACGGGGAGAACATTCCCAAGTTCCTGAgctgtgagtttgtgagcaaCGATAACTGGTTCGTCACTTTCAAATCGGAAACCGACGCACAACAGGCCTACAAGTACCTCAGAGAAGAGGTTCGGGAGTTCAAGGGAAAGCCCATCATGGTGAGGATAAAGGCCAAAACCATGGCAGTCACTTCCTTCGCTCCAAAAAATGGCTACCGACCCGCTCAGCTGGACCCGTGCGGCAATCCTTACCGCCCCTACTTCCCCCCCAGCAGCTACCAGCAGCCCTGCCCCACCCAACAGCTGTATGATTTCACCAATGACGTGTGGGCTTCGGCTGCGGCAGGATACCAAGAATGTGCTGACCATCAAACGTTGATGAATGACTTCATTAATGGATTCTCCAGCTTCAAACCTCATAACCCACACAGGATGAGGAGAGGCTCGCGGTGGTCAAATTCTGACCGTTGGCAGTCCAATCTAAATGATTCCTCGCAGTCCTCCGAGCAAGCGCCAGTGGAGGGCTCCTCTTCTCCGCCGAGGCCGGGTCGAGGACGGTCGCGGGGCGCCATGCGCCGTCCGAGCAGAGGTGTAAGGAGCGAGCCCACTTCTGACCGGGGAAGGAGAGGAAACTTgagccagaggaggagagagaaccCGAGGTCCTGGGACAAATCTGCCGCAAGCAGTCGCaaTGCACAAAGTCAGTCGCCTCCTCGTCAaccgtctcctcctcctcctgagcTCGGCCTGACGAgcttccctcctcttcctccggcAAAGACTGCCATGGCAACGGTACAGGCAGCTAACGGCAACGTGAAGATTCCAGTGAAAATCAGCAGCCCGTGTGCACCGGTGCCAACTAAGTCTCAAGAGCCTCAGCCAATCTTAGAGCAGAATGTGACGGCGCGTGCCGAGACGACCAGCGAGGCCAACCCAGCTCAGTTTACACAGGAGCCAGTCGCAGAGTCCAAGAGGCTAAGCTACGCCCAGATCTGCCAGAGAGTGTCGTCCAATGAGCCGGCGCCGCCCGCTGACCTCGCCCCTTCAGAAGCAGCGCACATCCCAACTTTTCCGGGCCAGGCATCCAAACCAGATGTGTTGCCACAGTAATCATATTGGGTGTGATATATAAGCTGATAATCATTGTACTGTCTTATTACGCAAACCTGCCGCACGGAGCGATGTGGCATCACTCGGCGCAGGAAGATGCGGCATTAACCGCCAAACGGCCTTTAAATCAACTCCATTTAGGTCTGTATCTGGAAACCTTAGCCTTTATATACACCGCTGACAGGGtggggtgtgggggtggggggtcagACTGCTGGCTGGTTCAGGACAGGACGAGCTCGTGTGGGTCTGAGGTCGCCAGCCACTCAGGATGTTTATgccaacttttagtttttagaGCGCAAGCTGGAAAGAATCTGTAAATGTTGATCTGCAACTTTAcgttttttgtagttttatttctTGATTTGTAGTTCAGATGAGTTTATTGAGAGCCAGGTTTTGATTTAGTCTGGTTTTTCTGATGGCTCTTCTTTTCctgccttttgtgtgtgtgtgtgtttgatgttttCTCGCTGTACAGGATGTTCcgccatgactttttttttttttcttcttctttccatACATCTGTGTTATTCTTTAGTCTACAGGGCCGCTGTGGGCACACATGATGCTGTTTCATAAAATATTAGTACTAGTCACCAAGTTTGTTTCCATTCGCAGACGGTGGTGAGATGTCCCGGCTTGTAATGAACcaagttccagtgtgtgtgtgttagtgagtTCTGGCAGGATCAGACCTGTATCGatttgaactttaaaaaaaaagcactgaaTATCACTACTTTATCTCTGCACGActttttaaatttcattttaGAATTAAATTTATGTCCTATTTTTATTTACGTTGGATAGGAGTGCTTTTGTGTGTTAAAGCTTTAGTCTCACCTGTGTGGAGTTACGtgtacccccccccccgtgTCACAGCATACAGTGTTTCGGACACAGGCAGGCTCGGTTCAGGTCGTCCCGCGGAGCCTCTGGCTGGGCGCAGTAGTTACTCCGTGTCCGTAAACGAGCATCGCTTCAGCACGAGCCTCTCGAACTGCACTGATTCCAATGgtcttttgtttaaaatatCCAGTTTTAAATGTGAAACAGTTGTCCTGGAGAAAGAGCAGGCGTAGTTGTGGCACATGTTACTTTGTCTGTACAGATGTACATATTATTGAACAAATATTAAAGTGCCTTTCAAGTTAAAATGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302017 lncRNA downstream 147848 25034076 ~ 25034364 (-) True G223184
TU302016 lncRNA downstream 147848 25034113 ~ 25034364 (-) False G223184
TU301975 lncRNA downstream 158298 24996626 ~ 25023914 (-) True G223155
TU302004 lncRNA downstream 170394 25007489 ~ 25011818 (-) True G223181
XR_005637970.1 lncRNA downstream 236593 24928324 ~ 24945619 (-) False LOC120552179
TU302038 lncRNA upstream 3068 25198346 ~ 25199030 (-) True G223193
TU302048 lncRNA upstream 62388 25257666 ~ 25333390 (-) True G223202
XR_005638001.1 lncRNA upstream 100181 25295459 ~ 25300407 (-) True LOC120552440
XR_005638008.1 lncRNA upstream 113981 25309259 ~ 25313802 (-) True LOC120552444
TU302061 lncRNA upstream 121334 25316612 ~ 25385621 (-) True G223206
XM_039790085.1 mRNA downstream 2644 25092577 ~ 25179568 (-) False LOC120552233
XM_039790083.1 mRNA downstream 2644 25092577 ~ 25179568 (-) True LOC120552233
XM_039790084.1 mRNA downstream 2644 25093765 ~ 25179568 (-) False LOC120552233
XM_039790082.1 mRNA downstream 95310 25035884 ~ 25086902 (-) True LOC120552232
XM_039790943.1 mRNA downstream 214106 24963417 ~ 24968106 (-) True msl2b
XM_039789467.1 mRNA upstream 3784 25199062 ~ 25229544 (-) True LOC120551896
XM_039789468.1 mRNA upstream 3784 25199062 ~ 25229017 (-) False LOC120551896
XM_039790459.1 mRNA upstream 219606 25414884 ~ 25427197 (-) False LOC120552403
XM_039790458.1 mRNA upstream 219606 25414884 ~ 25427197 (-) False LOC120552403
XM_039790457.1 mRNA upstream 219606 25414884 ~ 25427197 (-) True LOC120552403
TU302014 other downstream 95504 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 214222 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 2963846 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 2964663 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 3173124 21990017 ~ 22009088 (-) True tfr1b
TU302146 other upstream 361195 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 535478 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 632813 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 632813 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 788316 25983594 ~ 25993497 (-) False G223331

Expression Profile