RNA id: XM_039790551.1


Basic Information

Item Value
RNA id XM_039790551.1
length 3760
RNA type mRNA
GC content 0.49
exon number 6
gene id garem
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8780406 ~ 8788701 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACAGACAGTTGCCCAGATGCACCCGTCGCGAGCTAAACAAACATGTCTCTGCTACATTATGAGACAACGGACCTTAATGATACGTAGGCCAATGGAAAGGGAAATGTGCCACGATTAATAAGAAACGTGCCGAACATAAAGCTGTTACGTTAGCTGATGGATAGTTGATTTAGCATTCCGTTGGTTAGCTTAGTGTAGCCTTTTGTGACCGTGTTTACACATTGCTAGCTAGCTCTCCAATTGGCTGCTGTAGCTAAGCTAGCAAAATGGACCTTGGAACAATGTTGTACAACAATTTAAAAGAAGTTACATGGAGCACGACGTCCTTACCATTAGATCAACTTGTCAGTGCTTATAGGTTGCCCCAAATTGCCAAGCTGGATAACGGTCAGTTGGTTGAAGGGCTTAGAGACCATGATTACCTCTTGATTCATTCCTGCCGTCAGTGGACGACTATTACTGCTCACAGTCTGGAGGAGGGACACTATGTCATCGGGCCCAAGATAGAGATCCCAGTGCATTACGAAGGTCAGTTTAAGCTATTGGAGCAGGACAGAGATGTCAAGGAGCCTGTGCAGTACTTCAACAGCGTGGAGGAGGTGGCTAAAGCATTCCCTGAAAGGGTATACGTCATGGAAGAAATCACTTTCAATGTTAAGATGGCTTCAGGGGAATGCAATGAAGATACTGAAGTTTACAACATTACCCTAAGCACCGGTGATGAGCTGACATTAATGGGCCAGGCTGAGATCCTGTATGCCAAGACCTCCAAGGAAAAATCCAGATTGAACACCATTTTTAAGAAGATTGGGAAGCTGAACTCCATCAGTAGGATCGGTCGAGGCAAGATGCCCTGCTTGATCTGCATGAACCATCGCACCAATGAGAGCATCAGCCTGCCTTTCCAGTGCAAAGGCAGGTTCAGCACCTGCAGTCCACTGGAGCTACAGATGCAGGACGGCGAGCACGTCATCAGGAACATTGTGGAGAAAACCCGCCTCCCGGTCAATGTCACCGTACCCAGCAGTCCGCCCCGCAACCAGCACGACCTGCACCTCATCCGCGAGGGTCATCGCTACAAATTGGTCAACATTCAGACGAAGACGGTGGTCGTGTGCTGCGTTCTGCGAAGCAACAAAATTATCCCCATCCATTTCCCCTTCCACATGGCCATGCCTAGATTCATTATTCCAGAAGAACTGCTGCAAGGAGAGTTGTGGCTAGACACTATGGTACATCGCTGGTTCTCCTTCTGCCAGGAGCAGTTTGACATAGACGACTATTCGCGAGCCGTCCGCGACGTTCGGACGGACTGGAACGACGACGGTAAGAGTCCTAAGAAGAGCAGCGGCAATGTCAGTTGCAGCGGAAGCAGCGgaggcagcagcagctccaACGGTTGTCCCAGCCACATGCAGATTCCCAGCTCTTTAATTTACGCCCGGGATGAACTCACCCAGTCCTTCCACCgactgtctgtgtgcgtgtacgGCAGCAACCTGCACGGTAACAGCGAGGTCAACTTGCAGGGCTGTATGACACTGTGTGGAGACTGGGCTCTTCTGCCTTCTGACAGCATCCCTACAGACCCGGGAGAAAATGAACACTTTCCCCCCGAACCGATGGATAGCACCAACCAACAACCGTCCCTCACCAAGTTGGACATTCCCTATGAGGAGCTGTGGTTGGATCACTTGAGAGGTCAGATCCCCAAACCTTCTTTAAGTGAGGGGATTCGAGGCATCAACAATGGCTGTGGTACAACAGCAGCCCTGTCATACCCAGTCACTTGTCCTCTCGGCGCAACACCCAGTCCAGATGCGTCTCTTACTCCACCACCGGTTCCACCCAAGTCTGAAGCTGTGAAGGAAGAATGCCGTCTTTTGAATGCCCCACCGATTCCTCCACGAAGTTTGAAACAGATGCCATCGGTGCCCATCCTGGCTAAGCCACGGCAGCAAGAGACTCGGTCTCCAAGTCCAACCCTCTCCTATTATTCCTCTGGTCTCCACAACATTGGAGCATCTGAGCAAGAGGCGGCCGACCCACAAGAGCAAAGCCCCGTGTGCTACCCCTGTAACTGGGGTCGCTCCACCAGCACTGAGCCAAATGCTGCGTTGCCCAGTGGTAGCCTGCCATCGGATGGGATGTCCTCCAGACTGTCTTGGCCAAACAACTTCAGCGGAGGAGAATCGCACAGCATGGAGGAATTTCTACCAGCCGGCTGTCGAAGTTACTACAGTTACCCCAGAAAAAGATCCCCGAGCACCCCAAAGACCTGTACATCCAGGCGCGTTGACTTTGACGGCCGAGAGCACGGTCACAGCAGTCAGGACCTCAGGTCGCAGAACGCCTCTCTGAATCCGTTCTGCACCAAATCTTCAAGCTACAATTCAGAAATGTACAGAGACAAGCCCCTCGAAGAATCAAACACTAAGCAGAGCCTCTCTTGCCCCATCTTACCGCCGAGAACACCCAAATCCAATGCCATAAAGAAGGGCACCGATTCACTGTCGGGGTCAGCCTGTGACAGTGAGCAGGAAACGTCAAATTGCCCACGTCTTCGGCACGAGCAGGGCACAAAAGAGATAACTAACTCATTAACTCCTAACTGTCCATCCCCATCTCCCACTGCACAGTGGCAGCCCCCGTCCAGTCTGGCTGGTCTTTCTATTGAAGAGGTGTCCAAATCTCTAAGGTTCATCGGCCTGCCAGATGACATCGTGTCTCTTTTTGTGTCTGAGAAGATCGACGGGAATTTACTGCTGCAGCTCACGGAGGAGATTTTGTCGGAGGACTTCAAGCTAAGCAAACTGCAGGTAAAGAAACTCATGCAGTTCATAAATGGGTGGAGACCCAAGGTCTAAATGACAGTATGTGACACTAAATTCTGTGATAAAGCAGAGAGTCATGCCTTCAGTCTATATGCAATGCACACCCAAGCCACAAAGAGTTTCTTTTTTGTATAATATGAATTTATTTCCTTGTTACTTTATTGTGGGGATAGTTGGGTAAATGGTCAGTTCCCAGCCAACCTAAAGTCTGTGACAGCTATTTACTAACTGCATGGAATCATTTGGCACTTTCATGAAGACATGTTCATGTCGGCTACTTAGTACCCTTTCTCCCGCagcctagctagctaaactAAGCTGTTAAACTAGTGTTCATGTTATCACACAAATCCTAATTTAAGCCAACAAATGTAAAGGAAAACACTGATGTGACAAAACATAATTAAGATTGGCTCATTCTGTCCTCAAAAGGGGAATATTACGAGTTTCTGCTCTTTCCGGGATTTTTCAAAGACCACAGTAAGGATGTACTATGGTATATGTTGCTTATTTaccatttttaaaaataaaacaatgtaaatgttttgCAGTGAATACACAATTGGACATTTGGCCAAAAATAAAGCTTGCATCCCAAGCTTGCAATTACCTGCAGTCAGTGACATACGATGCAGTCACCATTTTCACGAGGTCAGGGATGTGATAAAGAACGTTGCTGCAAGTGCATTTCTCAACGTCAATTTCATTTAAGTCAAGACCTGGCTACTGCTGACAAGTGCTAAGGTGTACTCTACCCCTTTTTAAAGCTcttcttaaaggtgctgtaagcaatgttgggtgacgtcacttcttgttgacattcaaagtattgtcaaacaaaacggaggctagcccTACCTCCTCCTTATCCCATCCCctcccttccgcgcactaaccccccaacccccacccccaaatccttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638010.1 lncRNA upstream 4555 8771816 ~ 8775851 (+) True LOC120552459
TU295784 lncRNA upstream 52192 8726772 ~ 8728214 (+) True G218537
TU295773 lncRNA upstream 59338 8713346 ~ 8721068 (+) True LOC120552042
TU295775 lncRNA upstream 59338 8713346 ~ 8721068 (+) False LOC120552042
XR_005637956.1 lncRNA upstream 59421 8713303 ~ 8720985 (+) False LOC120552042
TU295833 lncRNA downstream 2639 8791340 ~ 8791961 (+) True G218581
TU295842 lncRNA downstream 8149 8796850 ~ 8797078 (+) True G218589
TU295915 lncRNA downstream 228905 9017606 ~ 9017845 (+) True G218651
TU295927 lncRNA downstream 300558 9089259 ~ 9092094 (+) True G218660
TU295929 lncRNA downstream 307241 9095942 ~ 9105212 (+) True G218662
XM_039790546.1 mRNA upstream 12204 8763746 ~ 8768202 (+) True dph2
XM_039790547.1 mRNA upstream 17030 8756644 ~ 8763376 (+) True mcur1
XM_039790549.1 mRNA upstream 17030 8756647 ~ 8763376 (+) False mcur1
XM_039789529.1 mRNA upstream 24653 8750920 ~ 8755753 (+) True LOC120551930
XM_039790973.1 mRNA upstream 29950 8741090 ~ 8750456 (+) False zgc:56231
XM_039790133.1 mRNA downstream 84909 8873610 ~ 8912898 (+) True arhgap29a
XM_039790135.1 mRNA downstream 103018 8891719 ~ 8912898 (+) False arhgap29a
XM_039790134.1 mRNA downstream 103018 8891719 ~ 8912898 (+) False arhgap29a
XM_039790269.1 mRNA downstream 124563 8913264 ~ 8956540 (+) True abca4a
XM_039790270.1 mRNA downstream 124563 8913264 ~ 8956540 (+) False abca4a
XR_005638067.1 other upstream 41764 8738575 ~ 8738642 (+) True LOC120552752
TU295657 other upstream 173828 8550783 ~ 8606578 (+) False G218441
XR_005638015.1 other downstream 423217 9211918 ~ 9230163 (+) False rnpc3
TU295977 other downstream 588243 9376944 ~ 9378147 (+) True G218694
TU295978 other downstream 669482 9458183 ~ 9458700 (+) True G218695
unassigned_transcript_1412 other downstream 1443785 10232486 ~ 10232557 (+) True trnac-gca_34
TU296163 other downstream 1633885 10422586 ~ 10423249 (+) True G218848

Expression Profile