RNA id: XR_005638013.1


Basic Information

Item Value
RNA id XR_005638013.1
length 2656
RNA type transcript
GC content 0.50
exon number 9
gene id drd3
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 16266303 ~ 16284735 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATtatacatttcattaaaactaaATACAAAAAGTAGTTAATTCTGACATTAAAACAGCTTTTTGCGGGGTTGTGATAATTAGTCTCCTCCATTTGTCACTGCATCACTAAACACGCAAAGGGAGACTCCTGACGACTCACGTAGGCTACACGCGCGCCTCCCGTGTGGCTGCAAAATcaaggtgtaaaaaaaaaaaaaagaccaacgCGTGTTACCGGCAGTCACACAGCCACAGAGCATTGGTGAAAATGTAGAAAGTGAGTGGTTCATGTGCGAGCTTACCACATTCACATTCGCCTGTGCGCAATAGCACCGAGCGCTCCTCCTGCTGCTCGCCTCGCAGTGCTGGACGCGATGACCGGATAACTTTTAACTCTGCAGTTACGGATGATGCTTTTATCCTCGATGGCATCTGATGAATTCTTCTCTGGGAAACCGTAACAGGTCTTCCAAACATCTCCTCTCCCATGTCACCGTGGCGTCTCCATGGCGATGTTCAGCAGTGCAGAGCAGGTCTGGAACGAATCAGACAGACTTGGATTGGACTCAGAGAGGAATGAGAGTTCAGGGGAATCAGGGCAGGACGAGCGTAACTACTACGCCATGCTGTACTCCCTGCTCATCCTGGGCATCGTGTTTGGAAATGTGCTGGTGTGTCTGGCTGTTCTGAGGGAGCGTTCCCTCCAGACGACCACCAACTATCTGGTGGTCAGCCTGGCTGTTGCCGACCTGCTCGTGGCCTCGTTGGTCATGCCCTGGGCTGTGTACCTGGAGGTGGTCGGCGGCGCTTGGCTTTTCAGCCGGCTCTACTGTAACGTCTTTGTCACGCTAGATGTGATGATGTGCACTGCCAGTATCCTCAACCTGTGTGCTATCAGCATTGAcaggtacACAGCAGTGGTGATGCCCGTCTTGTACAACACCACCCATCGCTCCAGGAAGAGAGTTTTTGTGATGATTGCCACTGTGTGGGTCCTGGCCTTCACTGTCTCCTGTCCGCTGCTGTTTGGTTTCAACACCACAGATGACCCCATGGTGTGCTCCATCTCCAACCCCGACTTTGTGATCTACTCCTCGGTGGTGTCCTTCTACCTGCCGTTTATTGTCACTCTGCTGGTCTACGTCCGCATCTACGTCTTCCTCAGGATGAGGCGGAAGAGGATCACCTTCGGCCAGGCCAGCGGAAAGGTGCAGCCAGGCTCAACTCTGCCGTCTGTGGAGACCTGTCTACAAGAAGAGACTCCCAAGGCAAAGCAAGACCTGTCACCTATAAGGATTAAAGTGAGTGTAGAGCCTTCAGGTCCCTCCAAGCCCAACCTGTTGTCAGGTTGCCTGGGGCGCAAACGCCCAAAGACGGGACCTGTGGAGAACTCTGTGGTGCCCCCGGTGGACATGCAGAACTGCTGCAGCATCAGCCACGCCTCTTGCGGCCGCACCGAGCTGGATCTGGAGCAGGAGCGAGGGAAGGAGGAGGCGGAAGAGAACAACCAGAGTGAACGGCCTCCTGTCAGGATGAGCTGCGAGGTGAAGGATCTGTCAAATGGACGAACACACACGTCACTGCAGTCGATGGCTCTTTCTCACATTAACAGCTCACGATTCAGGAGCATGCACGCACGGGAGAAAAAGGCCACTCAGATGCTGGCCATTGTGCTTGGACATGCTACGTGCCTCCTGGGCTTTACAGTGCTTTCACCTGGCTGGGTTATGTCAACAGTGCCCTCAACCCTATTATCTACACCACTTTTAACATCGAGTTCAGACGGGCCTTCATCAAGCTCCTGAGCTGCTGAGGAGGACAGCGCGCCAGGAAATTCAAATGGAGATTAGGCTGTGCACTTGTGCTCCAACTCAAGCGTGGTGCAGGAATTACACAGTAGCAGCATGAAAAACAACAGACGCTGTGGTATGcaataaatacaaacaaaaggGGATTTTCTTTCTCAACAGGGCTGGGACTCCATTTAAACAGTATTACTCCTCAAATAAGACTTCTACCTACATTTTCACATGCATACAGTCTTATTGATAGCACAACGTGTTGGACTTTCTTGTTGAATATGTCTTGTACAGTATGAACGCTGCACTTTGGCACAGTCCTTTCCAATTGATGTAAGTTTGGAAGCTCTTTGGACTCAAGACGAAGCTTGAGGCTGATAAATTGAGAGCTCCGGGCCACTTCGTCCTGAGGCCCGCTGCCACCGCACTGTGGATTAACTGATGTTACTCACCTCCCACACTCACCCCTTACTTCATCACCATCAGTTACTCTCCAGTGAATGCACACATCAAATATCAAGGACATTCACTTGAATTTTGCAAGAAGGATCGTATTTGTCCCTGCCAAGCCTCACATCATTTTAAAGATTGTCATATATATTGATGTGGAAACATTGTGCTCAGTGTGAATTCATTataattaaaagaaatgtgaGATTTTGATGTAAtgcacagtgttttttttaaaggaactcTCTGTTTATTGGCGAACCTCCCTGCTGGCGAGTTGCCTGCTGCTGTTCTGACGCGCTGATAAACGGAGGAGCTGTGTGATCCTAACAAATCAAGCAGGATTATCAACCATGTGGTGGGCAGGTCTGTCATAGACACAACATTTACTGCAGTGCGttgtaaataaaagaaatgattaaatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297972 lncRNA downstream 1518 16264577 ~ 16264785 (-) True G220211
TU297964 lncRNA downstream 56762 16208258 ~ 16209541 (-) True G220203
TU297931 lncRNA downstream 147715 16117953 ~ 16118588 (-) True G220171
TU297767 lncRNA downstream 332034 15881506 ~ 15934269 (-) False G220048
TU297766 lncRNA downstream 332034 15911700 ~ 15934269 (-) True G220048
TU298013 lncRNA upstream 53083 16337818 ~ 16339037 (-) True G220243
TU298026 lncRNA upstream 80469 16365204 ~ 16366613 (-) True G220254
TU298029 lncRNA upstream 163195 16447930 ~ 16450221 (-) True G220257
TU298063 lncRNA upstream 187513 16472248 ~ 16477515 (-) True G220272
TU298062 lncRNA upstream 189826 16474561 ~ 16477515 (-) False G220272
XM_039790173.1 mRNA downstream 37553 16217158 ~ 16228750 (-) False ccdc191
XM_039790172.1 mRNA downstream 37557 16217158 ~ 16228746 (-) True ccdc191
XM_039789587.1 mRNA downstream 81898 16180440 ~ 16184405 (-) False naa50
XM_039789586.1 mRNA downstream 81899 16180440 ~ 16184404 (-) True naa50
XM_039789580.1 mRNA downstream 86101 16169979 ~ 16180202 (-) False LOC120551982
XM_039790563.1 mRNA upstream 1762 16286497 ~ 16288328 (-) True si:ch211-161h7.8
XM_039790561.1 mRNA upstream 1762 16286497 ~ 16288221 (-) False si:ch211-161h7.8
XM_039790562.1 mRNA upstream 1762 16286497 ~ 16287681 (-) False si:ch211-161h7.8
XM_039789827.1 mRNA upstream 43438 16328173 ~ 16333827 (-) False mix23
XM_039789828.1 mRNA upstream 43438 16328173 ~ 16333101 (-) False mix23
TU297865 other downstream 201082 16064670 ~ 16065221 (-) True G220124
TU297855 other downstream 261539 16003879 ~ 16004764 (-) True G220117
TU297839 other downstream 292667 15968744 ~ 15973636 (-) False si:ch211-140b10.6
unassigned_transcript_1416 other downstream 620873 15645358 ~ 15645430 (-) True trnaa-agc_30
XR_005637989.1 other downstream 713249 15539634 ~ 15553054 (-) False LOC120552366
XR_005637973.1 other upstream 498334 16783069 ~ 16795124 (-) False LOC120552205
TU298248 other upstream 589914 16874649 ~ 16875300 (-) True G220412
TU298817 other upstream 2325501 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other upstream 2339991 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298948 other upstream 2654264 18938999 ~ 18949481 (-) False mettl4

Expression Profile