RNA id: XM_039790578.1


Basic Information

Item Value
RNA id XM_039790578.1
length 2446
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC120552480
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 20747747 ~ 20758794 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGCTGAGTTAGCTAGCTTCGGAACCTCTACTACTGactataacgttagctagctagcttattggAACCACTACTACTTTTAACCTACACCGttaattGAACCTAACGTTACAATCTGTAACCAACGTTATCTGGGAATATAACATTATTCAACGTTACTCCTCATCCCTAACTTTAGTCCCCAATCAACATGAGTGATCCTTGGCAAGAGTGTATGGATCACTGTGTGGAGGTCACCAAAAAGGCTGGGAGGATGATCCGCGAGGCGCTCCAGAAAGACATCACCGTCATGCACAAGAGCTCACCAGTTGACCTGGTGACTGAGACGGACCAGAAAGTGGAACGGCTCATTATATCCTCCATCAAGGAAAAGTACCCCACTCATAGcttcatAGGCGAGGAGTCCGTAGCAGCAGGCGCTCCTAGTGTTCTAACTGACAGTCCCACGTGGATCATCGACCCTATTGATGGTACCACCAACTTTGTTCACAGGTTCCCATTTGTGTCTGTATCAATTGGCTTCACTGTGAAGAAAGAGATAGAGTTTGGGATTGTCTACAGCTGCATCGAGGACAAAATGTACACAGCACGGAAAGGGAAAGGGGCATTCTGCAACGGAGACCCGATTAAAGTGTCAGGACAAGAAGATATAAGCCAATCTCTGGTACTGACAGAAATGGGCTTCAGGAAGAATCCTGAGCATTTCAAAACAATGTTGGCCAACCTCAAGACCATCCTCACCATCCCGGTGCATGGTATCCGCTCCCCGGGCAGTGCAGCTGTCAACATGTGTTTGGTAGCGTGCGGATCGGCTGATGCGTACTACCACATGGGCATCCACTGCTGGGACATGGCTGCAGGGGCGGCGGTTGTTACTGAAGCTGGAGGAGTTATCATGGACATTTCAGGTGCACCGTTTGATCTGATGTCCCGGAGGCTGATCATCGCCAGCAGCAGAGCAATAGCAGAACGCATCGCTAAGGAGATAACAGAGTTTCACGTCGGGAGGGACGACACAGATGGCGAGTAAATTTCCATAATTTCCTCTACCAACTTTCAGTTATTAAATCACCTGACTGACTGCATTTACTGTAACAAGTCACAATGatgatgctgatgatgatgatataagAACCAAACCGATAAACTCACCTCTGAAGAACTATACTCTGAAGTTTGTTAGTCAGCCCTTAAGACTTTCAGCCTTCTTTCTGCTTTCTTTAAACGTCATTGTTGTGATTCTGTACTTTTATAGATTCAGACTTTTTATTCTGCTGTAACTCGATGATATTGCTTGTGATGAGGGTATTATGCCATGCGTGTCTGACTTTACACCTGTTTTTAGCCATTATTTATTCTTTATATTAGGACTGGGTGTAATGTCCAAAATCTTCAATCACGATCATTTGATATCTTGATAACGATATATATCACGagcatgttttctggtaattcaataaataaataaatagtccaTATGAAATGACCGCATGGTAAAGCCTATTTTTGTATACTCCCGTGTGAATTATATACTTCCAAGTATTTTCCCATTTTATTAGGAACTtcagtgcaaaatgaacataatCTGCAAGGATCCAAGCGTAAAGCGCTGTCCAAATGACGTAAATATTGCCGTTACGCCGTCCAGccgctgttttttatttttttattttatttttcgacCTATAGAAAAATACATACGATGGATCACGATACACATCGTCATATCCCCCAGGACTTAAACTAGGTCTCCACGCTAATGTTGGTgaaagtgttgacatatgaaagcatcaaacatgaatTTAAGATGCACAAAAGGAAGAAAGTCCCAAAAAAAATCCTGTCCAGGCATTTTTAATAAAGCCTTTTAATAAATAGGGCAAGACGTTAAAAATACCCCCAACGCGTGTCAGCTTGAGCCTTCCTCAGGGTGTAGTATGTGTATGAATTTTAGATAATTGAGATGCGAGTACATCCAGTTGTTCCTTGCACCCGTTTGCTCAGCCCCATTAAGTTGTGTACGGGATGCAGGAGTTTTCTACCTGGAcgttattgtaaacaaacattgtgattgggtCTATTGGGTAATTTTAGGAGCCGATATGTTCAGGTTTTGACCAATAGTATTTATTTTCCATGTATGGTTTTATCtttggttattgtatttagttatatttatttaatatttcatgTGTTGTTTACACAGTAAGTAAATGAATGTCAGGGCCATCACTATTTTGCACTATAGTCAATTGAGGAATATGTACACCAAATATTGTGTACATATAATTACTGTACTGTTTAATGttagtttgtttatttgtttgtgtgtgtgtttttctttttttttttttttttaatcaagtccAGATTTAAAATACCCTGATCTTCTTGAAAACATGTTAAGTGTTTTTAATATTAAGTATGTTTTGGATGTAATAAAGA

Function

GO: NA

KEGG:

id description
K01092 E3.1.3.25, IMPA, suhB; myo-inositol-1(or 4)-monophosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299600 lncRNA downstream 15505 20686190 ~ 20732242 (-) True G221400
TU299578 lncRNA downstream 179963 20567559 ~ 20567784 (-) True G221385
TU299546 lncRNA downstream 278294 20469146 ~ 20469453 (-) True G221359
TU299467 lncRNA downstream 485592 20258703 ~ 20262155 (-) True G221287
TU299476 lncRNA downstream 534489 20207738 ~ 20213258 (-) True G221293
TU299623 lncRNA upstream 3114 20761859 ~ 20762077 (-) True G221415
TU299625 lncRNA upstream 7854 20766599 ~ 20766961 (-) True G221417
TU299644 lncRNA upstream 37126 20795871 ~ 20821240 (-) True G221433
TU299690 lncRNA upstream 153741 20912486 ~ 20912751 (-) True G221471
TU299691 lncRNA upstream 201883 20960628 ~ 20960830 (-) True G221472
XM_039789573.1 mRNA downstream 6354 20735026 ~ 20741393 (-) False LOC120551976
XM_039789576.1 mRNA downstream 6356 20735026 ~ 20741391 (-) False LOC120551976
XM_039789574.1 mRNA downstream 8581 20735026 ~ 20739166 (-) False LOC120551976
XM_039789575.1 mRNA downstream 8581 20735026 ~ 20739166 (-) True LOC120551976
XM_039790630.1 mRNA downstream 15496 20572208 ~ 20732251 (-) True LOC120552510
XM_039790670.1 mRNA upstream 76433 20835178 ~ 20862688 (-) True LOC120552536
XM_039790186.1 mRNA upstream 106098 20864843 ~ 20872952 (-) False zgc:111976
XM_039790187.1 mRNA upstream 106098 20864843 ~ 20872252 (-) False zgc:111976
XM_039790185.1 mRNA upstream 106098 20864843 ~ 20872252 (-) True zgc:111976
XM_039790669.1 mRNA upstream 458935 21217680 ~ 21221667 (-) False rbis
TU299133 other downstream 1420853 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 1798266 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 2116272 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 2122949 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 3872447 16874649 ~ 16875300 (-) True G220412
TU299660 other upstream 77552 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 1231272 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 1444038 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 1444038 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 4204700 24963445 ~ 24967990 (-) False msl2b

Expression Profile