RNA id: XR_005638015.1


Basic Information

Item Value
RNA id XR_005638015.1
length 1703
RNA type transcript
GC content 0.49
exon number 16
gene id rnpc3
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 9211918 ~ 9230163 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTCCATAAGGTGGTGCTATTTGTTATCAACCCGAAATTATcgttagaagaagaagagccaGGCGGAAGTGTTTAGTGCATGGAGCTGGCTGCAGCACAGGCAGTGAAATGGACAAGAATGAGGAACTGGTCCAAACAAACTGCAGTAAGACACTGCTTATCCGCCACTTACCGGCTGAACTCAGCCAGGATGAAAAAAAGGACCTCTTAAAGTATTTCGGAGCTGAGACGGTCAGGGTCTTCTCAAACACGGGTCGTTTGAAACATGCAGCCTTTGCATCCTTTAGAAGTGAAAAGTCGGCAGCAAAAGCTCTTAGCAGACTCCATCAGTTAGAGATTCTTGATCATACACTCGTTGTGGAGTTTGCCAAAGGAGAAGATCATGTCACAGTATTAAAGGACCCACCAGTGTCAGACAGTGGTAAACGGGGCAGGGAAGAGCAGAAGAAACCGGAAACCAAGCAACCAAACATTCCCCTTATAGAGACCGGCATTGCACCTAGCCTTGGGTTGAATTTCCAGTTGAATCCCACTTTGAAATATTTATACCCCCCACCTTCTAATAGCATTCTGACAAATATAACACATGTCCTCATGAGTGTGCCCAAGTTTTATGTTCAAGTACTACATCTGATGAACAAGATGAATTTACCATGTCCGTTTGGCCCAGTCACTGCCAGACCCCCCATGTTTGACGTGTTGCCTCCTGCGCCTCCCTTCCCCATGCCTCCTCCTTTCCCTCCTGATTATCCCCCGCTaccagaggaggagatggagctGTCCAGTGGACAAGAGTCAGAGTATGAGAGTGGGGAAGACGAAGACAAGGAGAGGATTGTTCGTCTGATGGGCCTGGTCAACCAAGCATGCAAAAGACCCTTGAGACCAAAAACAGCTTCAAAGAGAAAGAAGCCCAAGATCAAGGATCTACTCTATGCTCCCAAACCAGACTCTCAGAGTGCTCCAGTGCTGCAGCCCTCCGATGTGTTTGAGCAGCCCCACCCCGCTGGGCAGAAGAAAATTGAATTCCACATTTCGGTTCCAGAGGTGGCAGCCGTAGTGGAAGGAAGTGGGCCAAGTCAACCTGATGATGAAGGCAGAGAAGTGGCTGAGAGGGAGCTCAGCCCCAGCAGCAGTCAGGAGGTGGCAGAGGCCGAGGGTTTCGGGAAGCTTTACCCCAGCGCCCAGACGTCCCAACAGCAGGAGGAGCACAGCGACGAGGAGCAGGATCTCCCCTCAGACGTCATCTCCAGAAAGGAGCTGGAGAAAGGACGGCTGTCAAGAGATGAGATAAAAAGGATGTCTGTGTTTAAAAATTATGAACCGGGTGAGCCAACCTGCAGACTGTACGTGAAGAATATTGCAaagcaagtggaagagaaagtAGGACCTGAAGTACATCTATGGGAGATATGTCAACCCTTTGTCAGAAGCCGAGAGAAACATgttTGACATTGTGTTAATGAAGGAGGGGCGGATGAAAGGGCAGGCCTTCGTAGGACTCCCCAGTGAGCAGAGTGCAGAGAAAGCCCTGCGGGAAACCAACGGCTACGTTCTCTATGACAAACCTCTCGTCGTCCAATTTGCTAGATCTGCCAGACCAAAAGAAGACAACACAGTTACCAAGAGAGGACCAAAACAACGATGAGCTCAACAGGTGATGGTCGTCAGATGTCATCTTCTTCTTttataactaaataaa

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638014.1 lncRNA upstream 833 9208182 ~ 9211085 (+) True LOC120552481
TU295933 lncRNA upstream 38985 9166381 ~ 9172933 (+) True G218666
TU295930 lncRNA upstream 81494 9117273 ~ 9130424 (+) True G218663
TU295929 lncRNA upstream 106706 9095942 ~ 9105212 (+) True G218662
TU295927 lncRNA upstream 119824 9089259 ~ 9092094 (+) True G218660
TU295962 lncRNA downstream 20307 9250470 ~ 9250759 (+) True G218687
XR_005637936.1 lncRNA downstream 30279 9260442 ~ 9292653 (+) True LOC120551942
TU295976 lncRNA downstream 106169 9336332 ~ 9336539 (+) True G218693
TU295971 lncRNA downstream 384677 9614840 ~ 9665678 (+) True G218690
TU295993 lncRNA downstream 516866 9747029 ~ 9747273 (+) True G218709
XM_039790269.1 mRNA upstream 255378 8913264 ~ 8956540 (+) True abca4a
XM_039790270.1 mRNA upstream 255378 8913264 ~ 8956540 (+) False abca4a
XM_039790133.1 mRNA upstream 299020 8873610 ~ 8912898 (+) True arhgap29a
XM_039790135.1 mRNA upstream 299020 8891719 ~ 8912898 (+) False arhgap29a
XM_039790134.1 mRNA upstream 299020 8891719 ~ 8912898 (+) False arhgap29a
XM_039790842.1 mRNA downstream 230142 9460305 ~ 9463043 (+) True prmt6
XM_039790334.1 mRNA downstream 246620 9476783 ~ 9591177 (+) False ntng1a
XM_039790335.1 mRNA downstream 248902 9479065 ~ 9591177 (+) False ntng1a
XM_039790333.1 mRNA downstream 248903 9479066 ~ 9591177 (+) True ntng1a
XM_039790336.1 mRNA downstream 248904 9479067 ~ 9591177 (+) False ntng1a
XR_005638067.1 other upstream 473276 8738575 ~ 8738642 (+) True LOC120552752
TU295657 other upstream 605340 8550783 ~ 8606578 (+) False G218441
TU295656 other upstream 605340 8600960 ~ 8606578 (+) True G218441
TU295658 other upstream 606095 8600960 ~ 8605823 (+) False G218441
TU295651 other upstream 630791 8549870 ~ 8581127 (+) False LOC120552265
TU295977 other downstream 146781 9376944 ~ 9378147 (+) True G218694
TU295978 other downstream 228020 9458183 ~ 9458700 (+) True G218695
unassigned_transcript_1412 other downstream 1002323 10232486 ~ 10232557 (+) True trnac-gca_34
TU296163 other downstream 1192423 10422586 ~ 10423249 (+) True G218848
TU296196 other downstream 1258104 10488267 ~ 10494988 (+) True G218875

Expression Profile