RNA id: XM_039790590.1


Basic Information

Item Value
RNA id XM_039790590.1
length 3361
RNA type mRNA
GC content 0.53
exon number 21
gene id rps6ka3b
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25591480 ~ 25660731 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTGATAATCTTTATCACCTTTTACAAGTGTTTCCTGTTGATTACACAGATGATGCATTAACAGACCTGTGGGAAATCACAGCACCACGGACCCCCTTCTCATATTATGTGGtgcttcacacaaacacactgcagaAGAAGTTCAGTTAATGATTTAAAGTGTGTCATGTGACTTCCTGTCTGTCCCCTGCAGTGACTTAGGCTGTTTGGGTTTCAAGGACAGATGTGTGCCTTCCTGTGCAGATGTTGTTGCCAGGGAAACAATGACAGGACATGCTTTAATCGCCACGGTGAACAGCTGGagggccagtgtgtgtgtgtgtgtttgtgtgtgtgtttccctcgGTGCCGTGTGCAACAATAAGTCTGACAGGGAATCAGTTTGTGACGCCGTTGTGACAGGAGAGGAGCGCGATGAAGACccttttatttcacattttgaacAGGCAGTTTCAGgatGACGTGCCAATCAAGGAGATCAATATCACTCATCACGTGAAGGAGGGATCAGAGAAGGCCGACCCGCGACAGTTCGAGCTCCGCAAAGTCCTGGGACAAGGTTCTTTtggcaaggtgttccTGGTGAGGAAGGTCACAGGGCCAGACGCCGGTCAGCTGTACGCCATGAAGGTCCTGAAGAAAGCTACGCTAAAAGTGCGTGACCGGGTCAGGacaaagatggagagagacatCCTGGTGGAGGTCAACCATCCCTTCATCGTCAAACTGCACTACGCGTTTCAGACGGAGGGGAAGCTCTACCTGATCCTGGACTTCCTCCGAGGAGGAGATCTCTTCACCCGTCTCTCTAAGGAGGTGATGTTCACAGAGGAGGACGTGAAGTTTTACCTGGCAGAGCTCGCGCTGGCCCTCGACCACCTGCACAGCCTGGGCATCATTTACAGAGACCTCAAGCCAGAGAACATCCTGCTCGATGAGGAGGGACACATCAAGCTGACCGactTTGGCCTCAGTAAGGAGTCGATAGACCACGAGAACAAGGCCTACTCCTTCTGTGGGACGGTGGAGTACATGGCTCCCGAGGTGGTGAACAGGCGGGGACACACGCACAGCGCCGACTGGTGGTCGTACGGCGTGCTCATGTTCGAGATGCTGACGGGAACGCTGCCGTTTCAAGGCAAAGACCGGAAAGAGACGATGACCATGATCCTCAAGGCCAAGTTGGGAATGCCACAGTTTTTGAGTTCAGAAGCTCAAAGTCTCCTCAGGAACCTTTTCAAACGCAACCCTGGCAACAGATTAGGAGCTGGACCAGACGGTGTGGAGGAGATCAAGAGGCATCAGTTCTTCAGCACCATCGACTGGAACAAGCTCTTCCGCAGAGAGATCCCCCCTCCCTTCAAACCGGCTTCAGGACGACCTGACGACACTTTCTATTTCGATCCAGAGTTCACAGCTAAAACACCCAGAGaCTCTCCGGGGGTTCCTCCCAGTGCAAACGCCCATCAGCTGTTCAGGGGATTCAGTTTTGTGGCCATAACAGAAGAGGACACACAACCTCTACCCAGTACTATTGTACAGCAGCTGCACAGAAGCACATCCCAGTTCTCAGACGCCTACGAGATCGAAGAGGACATCGGAGTCGGGTCCTACTCCATCTGTAAGCGCTGCGTACACAAAGGAAGCGGCATGGAGTACGCAGTCAAGATCATCAACAAGGCCAAGAGGGACCCGACGGAGGAGGTGGAGATCCTGCTGAGATACGGACAACATCCCAACATCATCACCCTCAAGGACGTGTACGACGACGGCCGGTCGGTGTTTTTGGTGACGGAGCTGATGAAAGGAGGCGAGCTGCTGGATAAAATCCTCCGACAGAAGTTTTTCTCTGAGAGAGAAGCCAGCGCTGTTCTCTACACCATCACCAAGACGCTGGAGTACCTGCATGTGCAGGGGGTGGTGCACAGAGACCTGAAGCCCAGTAACATCCTCTACATGGACGAGAGCGGGAACGCCGAGTCCATCAGGATCTGCGACTTTGGTTTCGCCAAACAGCTGAGAGCAGAGAACGGGCTGCTCATGACGCCGTGTTACACTGCCAACTTTGTGGCGCCCGAGGTGTTGAAGAAGCAGGGTTACGATGCAGCCTGTGACATCTGGAGTCTGGGAGTCCTGCTCTACACAATGCTAACGGGTTTCACTCCCTTCGCTAACGGTCCGGAGGACACGCCGGAGGAGATTTTGGCTCGCATCGGCAGCGGGAAGTTCTCGCTCACTGGAGGATACTGGAACTCTGTCTCTGCTGAGGCTAAGGACCTGGTGTCCAAGATGCTGCACGTTGACCCTCACCGGCGGCTGACGGCAGGTCAGGTCCTCCGACACCCCTGGGTGACGCACCGAGACCAGCTGCCCAAATACACCCTCAACAGACAGGACGCACCGCACCTTGTCAAgGGTGCGATGGCCGCCACCTACTCGGCGCTCAGCAGGAACGTGCCTCCGGTCCTGGAGCCGGTGGGCTGCTCCACCCTGGCCCAGCGGAGGGGACTGAAGAAGATCACCTCCACCGCTCTGTGACCTTTAACCTCCCTCACCTCCTTTAAACTCTGACCTCGATCTGACCTCCTGCCGgaccttcttcctcctcttcctcctcttctctctgtccgGTCCGGTCCGGGGGGGGACAGGCTACTGATGGACCCAGGAACTGCTAACGCCAAATAGGAACACAGAGACCACCGCGCCCCCCCCCTGCTGCCACCCCTGCCCTCTGTCCCGCACCTTAACAGACTCTTCTCAGCTTTAGCGCCACTGATCGACAGCCGGAACCGCGCCGGACTGAAAACCCGTTCCCGTCTTTGCTTCGGACAATCAGCGCGGCGCCTCGTAGACCCGGACGCAGAGCGCACGCGCAtcagggggggaaaaaaaagaaaaaagtactgtatttatttacttcAGACGGGGGAAATCTGAACATAGGAACACAGTAATCTAATGTATGCATTTAAAGAGATAGGATCCTTATTATTATACTGTCGTCATGGTTCTGCGTAGCTGTAGGTCCCGTATTTAAACCTCAAGTAGCCTCTGAGATCACGGCGCCGACAGAGAAGGACGGCTCGGCTTTAACACGTCGCTTTGCAGAACAAGAGAAATCCAGACGTAGGGAAAGGGAAGTCTGATAACAAGCTTTTTACTCGAATGTAAGTTCTCACTTGATGTTTTTGGGATACAGAAAAAAAGTCTCTCGGGATCatgcttttgttttgaaagtgatttattttgtacatctctcacacacagagacttcctgttcctgtttatgtgcaaaaaaaaaacagcactaaCGTCTGATTGGTTTGTCTCAACATTTTGCTCATTAATCGAGAAGTC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302157 lncRNA downstream 9276 25578299 ~ 25582204 (-) True G223265
XR_005637983.1 lncRNA downstream 29044 25556586 ~ 25562436 (-) False LOC120552299
TU302129 lncRNA downstream 50038 25471720 ~ 25541442 (-) True G223252
XR_005638004.1 lncRNA downstream 203331 25382543 ~ 25388149 (-) True LOC120552442
XR_005638000.1 lncRNA downstream 215979 25358648 ~ 25375501 (-) True LOC120552439
TU302114 lncRNA upstream 16075 25658589 ~ 25717023 (-) False G223239
TU302179 lncRNA upstream 58283 25700797 ~ 25770143 (-) True G223277
TU302111 lncRNA upstream 66529 25709043 ~ 25717023 (-) False G223239
TU302113 lncRNA upstream 66529 25709043 ~ 25710601 (-) False G223239
TU302112 lncRNA upstream 69306 25711820 ~ 25721181 (-) True G223239
XM_039790214.1 mRNA downstream 17515 25563886 ~ 25573965 (-) True eif1axb
XM_039790213.1 mRNA downstream 45376 25528232 ~ 25546104 (-) True map7d2b
XM_039790210.1 mRNA downstream 64354 25508623 ~ 25527126 (-) True zgc:112982
XM_039790597.1 mRNA upstream 26719 25669233 ~ 25683270 (-) False pdha1b
XM_039790598.1 mRNA upstream 26719 25669233 ~ 25683269 (-) False pdha1b
XM_039790600.1 mRNA upstream 26719 25669233 ~ 25683268 (-) False pdha1b
XM_039790599.1 mRNA upstream 26719 25669233 ~ 25683268 (-) False pdha1b
XM_039790596.1 mRNA upstream 26719 25669233 ~ 25683242 (-) True pdha1b
TU302146 other downstream 28940 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 504772 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 623490 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 3373114 22202783 ~ 22218366 (-) False smpx
TU302187 other upstream 88242 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 185577 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 185577 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 341080 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 399329 26041843 ~ 26042864 (-) False G223328

Expression Profile