RNA id: XM_039790593.1


Basic Information

Item Value
RNA id XM_039790593.1
length 6786
RNA type mRNA
GC content 0.50
exon number 11
gene id klhl15
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25742577 ~ 25765312 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGACGCCGAGGCAGAAAATGGCGTCCGCAAAGCCTGTGGACTGCTGTGGTTTGTTTGTTACCCGTTTAATTTAGAGCCGAGTTGGGGGGGTCTCTTCGTCTAGGCATATGGACGATAACATGGCAGTGCACCGCTGCCGCCCGCTTTCTTGATTCCGGAATCGAACCCGCAACTTCATGTCCGAAGGAGCCAGAGCTGCCTGGTCGAAGAGGGGTTGTGGGGATTCGCACCGCCGAGAACCAGGGAAACATAAACACAGGAAATGCGAGCGGCCCCTTAACGCTCAGCCGTCAAAGCCTGTGATTGTTCGCCCGGGCTCCAAAAGGTGTGTTATGTCGGCGGCAGATGTGGAGGTGTACCTGTCCCAGGTGCACGATGGGAGCGTGTCGTCGGGCTTCCGGGCGCTGTACGAGGAGCGTCTGCTGCTGGACGTCACGCTGCTGATAGAGGAGCACCACTTCCAGGCCCACAAGGCGCTTCTGGCCACCCAGAGCGACTACTTCCGGGTCATGTTCACAGCCGACATGAGGGAGAGGGACCAGGACAAGATCCACATGAAGGGGCTAACAGCCGCTGGGTTCGGCCACATTCTCCGCTTCATGTACTACGGCTCGCTGGAGCTCAGCATGCCCACCGTCCAGGAGATCCTTCAGGCGGCCATGTACGTCCAGCTGACGGAGGCGGTGGAGTTCTGCTGCTCCTTCCTGCTGGCCAAGATCTGTCTGGAGAACTGTGCCGAGGTCATGCGCCTCCTGGAGGACTTAGCGGGCGTGGAGGGAGTCCAGGAGCAGCTCGACAACTTCCTACTCGACAACTTTGTCCCCCTCATGAGCCGACCCGACTTCCTGTCCTACCTCAGCCTCGAGAGACTGCAGGCGTACCTGAACAGTGacgctctgagtcgcttccctGAAATCGAGCTGTACGAAGCCGTCCAGTCGTGGCTGCGACACGACCGGCGCCGCTGGCGACACACGGACACCATCGTGCAGTCCATCCGCTTCTGCCTCATGACTCCCGCCAACATCTTCGAGAAGGTGAAGACGTCTGAGTTTTACCGTTACTCCAGGCAGCTGAGGCAGGAAGTGGATCAGGCGCTCAGCTACTTCCACGACGTCAACCAGCAGCCTCTGGTGGAGACGCGCTCCAACCGCATCCGCTCCGTCCGCCCGCAGACCGCAGTCTTCCGGGGAATGATCGGTCACAGTATGGTCAACAGCAAGATCCTTCTCCTGCAGCGGCCAAAGGTTTGGTGGGAGCTGGAGGGGCCTCAGGTGCCGCTGCGACCGGACTGCCTGGCGATCGTTAACAACTTTGCCTTCCTGTTGGGTGGAGAGGAGCTGGGGCCCGACGGCGAGTTTCACGCCTCCTCCAAAGTCTACCGCTACGACCCTCGACAGAACTCCTGGCTACGCATGGCTGACATGTCTGTGCCCAGGTCCGAGTTTGCTGTGGGCGTCATCGGCAAGTTTATCTACGCCGTAGCGGGCCGCACGCGAGACGAGACCTTCTATTCCACGGAGCGCTACGACATCACCGAGGACCGCTGGGAGTTCGTGGACCCGTATCCCGTGAACAAGTACGGCCACGAGGGCACGGTCCTCGGCGGCAAGCTGTACATCACCGGCGgcatcacctcctcctccacctccaagCAGGTGTGCGTGTTCGATCCCGGGCGGGAGGCCGGGGGCGGCGTCGGCTCGAGCGGCTCGGACGCGCACAGGACGCGCGCCGGCCGCGGCCCGCTGCTGCCCGGCACCCACGCCAGCTGCTGGGAGAACAAATCCAAAATGAACTACGCCCGCTGCTTCCACAAGATGATCTCGCACAACGGGAAGCTGTACGTGTTCGGAGGCGTGTGCGTGATCCTGCGGGCGTCCTTCGAGTCGCAGGGCTGCCCGTCCACCGAGGTGTACGACCCGGACACCGACGAGTGGACCATCCTGGCCTCCATGCCCATCGGGCGTAGCGGCCACGGCGTGGCGGTGTTGGACAGGCAGATCATGGTGCTGGGCGGCCTGTGTTACAACGGCCACTACAGTGACTCCATCCTCACGTTCGACCCCGACGAAAACAAGTGGAAGGAGGACGAGTATCCCAGGATGCCTTGCAAACTGGACGGTCTGCAGGTGTGCAGCCTGCACTTCCCAGAGTACGTGCTGGAGCACGTCAGACGCTGCAGCTGAGaaacgGGAATGCACTGTTCACGGACTGAAGTCTCCCGCTGGGAGAGCCGGCATTTACACGCGGGAGGCTCTTCTGACGCGCAAGGCTTTTTAGAAACTGGAGACCAGCACTTACCTTCAGGTGAGGTAAAGATTGGCGCGGGCCATAAAATCTGCTGTTCTTAACGAAGCCAATCGAAGCGCGACGTGGCGAGACGTCGCGCGCGTCGGCTCGGACATTTTCAGATTTAGCTTTCTCAgaaaattggagaaaaaaaaaagtgtctgtgGGGAGGAAAAACAAAAGTTTAATTCTGCTGGTTTATGTTTGGACTGTGGTCAGTTTCTTAATCTACTACTCGCCTACTGTATTTAGGCTGTCCGGTCAGGCTTTTATTGCAGAAACGCACTGGAAGCGTCCGATTCATGCCTTTTTACGTGGGGgagcttatttttatttattttttcttatttattttaatttcaccaGTCAAACAAACCTGCATCTCAAATCCTGTCTGAATCAGGTGTCTCAGCCTGCACCCGTTGATCTATTTAAAGGCAAAAAACATCCTGTATATCGAGTTGCTCTTGTTGAGAAATAGGTTAGCGAGAGCCTAAGGCGCTTTCATACGATCAAAAAAATGCCCTATACCATGTATGACAGCAAGTCGAAGCATACAATCAGGTATATAAACACTATATAAACGGTAGTGTAGCTAATCTTATAGCCTGTCACACTGTAGAGATACAACTCTGACCGTGTTGTTACAGATGCTGCTAATGAACTGTCcgatcattcattcattcataaactCGCTTCCAGTGCGTTCCAGCTTTTAGTCCTTATTCTGCTCTTTACTCCCAGATATCCACCAAACTGTTCTCATGTTCGTATAACGTCACCCGTGTCtttctctgccccccccccccctttccttcCTCTGAATACGTGAGAGCTGAATTCACGATAACACTACAAGGTACACGAGGACTCGCCCTTCATTCAGCGATGATTTCATGATGATGGTGGCAGGTATTTTTCCTTTGCACAGGAAGGAAAGATCTTTCTCTCAGAGCAGCTCTGTATCCGTCTAGTCACTGGCAGTGCTTTACCTCCGCGAATCTACATTCCCTGCactttatcattattattattattattattattatcattattgttattacttgTTGTTGCAGCTGCAGTATTACAACCTGCTGCGATGTTACGGACATTTGGCAGTGTCTGAAATGAACCTTCTGGCTGATGATGACGAGTCTAGACGAACTGAAAATGTGCACACCGTGAAGTTAGAATATTTAAGAAACACTGGGCCTCACGCAGGAGCATTTTTGTATTCTTATActacttttttccccctcttcgTACGAGCGTTCCCAGTCGATTTCGGCACACTCTGAACCGGACCGAGTTTTCGTGAATTGCTCGTTTCAGCCTGATGCACATCGTTTGGAAGATGATCGACGCCCCCTAAAATTGCCCAATACGTGAGGCTGCCTGCTCCGCTCCGTTTGTTGGGAGGATTCGTTCCCCAAAAAATGTtaccaaagtgtaaaaaaagagATTCTCACACTGCAGAGCTTCAAGTCCCGCTGTTGGAAATGAGTCAGCACGTTTAGCAGTGTGAGTGTTGTGTTATTAAAGGACATGAAGCGATTAGCAGAATCTGATGAGCACAGCTGTTCACGATGTGTGATCAGAGCAGAGGTGCTAGGTGCTAAATAGTGTCTTTTCTTTCTAAAGGGACGCGACAAGGTCTTGGCCTACAGTAGGTGATGTTACACTGTCAGGTGATTTTCTCAGAGGACGATCCTAGACCGAGACCCCTGCAATAAAAGACCCTTAAAGAGGCAGCTGTTAGAGCGAGAGACTTTTCCAACAGTTACTGAAATGTATACGTTGCTGTGCTGAAATGGAAATCAAAGAAACAGCCTATCTGTAAATTGGCAGCCATGATTATGGTATAGCGCTGGGCGATATGACGATATATGTATATCGCCAAAACGATATAAAAATGTCTATCGTGTATATTTTTCTATATGGTTTCTATcgcaatgttgaaaaaaaccaGCGGCCGCACTGCGCTACGTCATTTGGACGGTGCTTTACGTTCGGATTCTTGCACGTTTTGTTCATTTTGCACTAAAGTTCTTGCTAAAATTCTTGCTTCTTCtaaaatgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcggaaaACAACTCTCCGCAAACCCAGAACGAAGTTTGTTTTTATAAGCTGCCAAACCGAAAGTGGATACAGCtgtgaggaatcagcagagacATCCTGACAGAAATATAGTTTgcctaaaactgacatttgggtATTTGACTTGGTAACAAAATGGTTTCTGCACACGTAACGTGGGACATATCGTTAGTTTAGACCTACATATCGGGTGAAAAGGTTTTTGCCGCATCACCCAGCCCAGGGTTTGTCTTAGTTATATATCTTGTTATCGTTAATTTCAGTATCCTATTTAAACTCCATATGTATTCAGATGAATGCGTAGCGATTTAGagtcaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcccgtgGAGAGAggcaccgtgtgtgtgtgtgtgtccccacCGTGGAGAGAGGCAGACTGTCGGTACTCGTACGAGATGTCTGGACTTCTTTTCGTGggtttctttattattatttttttaataaaggtccaccgtgtaggaatttctcccatctagcggtgaaattgtattttgcattcaagtgaatagtgctctctagcgcctcgcgttttcaaatgcgtgttgcaactacggtagccgttatgtaccGAGAAGCTACGACAAACATTTCTCCcgattttccctttttttgacGACGAGGAGTCCTTCTCCCGTGGCTCGGCATAAGTCCGATCCTCCGTTATGAACTAAAGGgcagtgcaggctttcaaatGTTGCCGGGGCGGCAACAAGCGCCTCTCgctgatctccttctccgtttcagctggtttcagtcacgtgacgctggcgctgaacgaaaacgcgttgtggattagctagacaggtgGGCTAGTgctctatgtccctctcagccattagagtttttcaaaatggcagaacgacatggaagcctccttggacttgcccgtccaaCGTAAATACAGAGAAGAAATTCTTCGCTTCCGAGGATAAGTCAGATCGttggcagaggtcattttacaccagTGAGGACATATTAATGAATAAAGACATAGATTTGAGCTagtaaaatacttaaaacgcTACACAGTGGACCTTTAACTTCGCTCGTACGTCACACTTGAGAACAAATCCTGTCGGTAAACTGGTTCGTGCGTGAGGCTCATTGTTTATTTAGCTGTAAATCTGTCCCGACACATTTCATGTTTGTCGTGAACAAAACCAGCTTCGGTGTATTTAGACTTTAAGCTCTTGTCCACCCTGCAGTGCTCAGTATAACCAAGACTTTCAGCTGCGAAtaactcaacaacaacaacaacaaaaaaataacagccAGCCAGTGTTTTTCCAGAAGATTATCACCAGTATGTCCACCAAAAGCTGAACTTTCACCAGCCTTTCTCAGTCCGCTGTGTTGATCTCAGACACTGAAATGTCACCTCGGAGTGCTTTGGTCGTATCCGAAGAGTTATTTCGCAGATTTCAGCAGAACTTTTGTTGTCATAATGATGTACTGTATAGATTAAGCAGCCCAGCACGCCTTGGTCCTGCAGCCCAGCACGCTCCACTCAATCACCAGCCCCATGTTCCTGATATATACATcgtccttttttaaatttttatttctattttttttttaatgagccAACTGTGAAAAGGGCTAGACAACACTGATGTAGTTCTGTCCGCCAGCCGCGTATatttaagttatttattttctgaagCGTTGCTTTCACCGAGCTATGCAGTAACAGCTGTAGGGTTATTTATTACAAGAATGTCTTTTGTGAATCGTGTTGTTTTCAAATTGTACTTTTTTGTCTACTTTTCCTCGTCTCTCATCTTCGTCCGTCCTGTCCGCCTCCAGAAGCGCTGCGTGTGGCTAACCAACGGATGGCTGTGAGAACGCTCTGTCTTCCAGTGTGAACGGACCACAAGGGTTCATAAGATCAGCAAGCCGGTAGTCAGCAAGTATTTCAAAATTTAGCTGCATGGGTCTTAACAGATGAACGGGTACAATTTGAAGGAGGGTACTGGTGTCATTTAAAGTTACGGTGCCAGGGTTCAACAATGgagctttttcacagcagacatgttgacttgtcatagtaggagaagcacagctgaaagtgataaccttaacgatggctcagttccatcaagtgtcccagtaagatatttcagtgagtcagcatgaacaa

Function

GO: NA

KEGG:

id description
K10452 KLHL15; kelch-like protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302186 lncRNA downstream 456 25739634 ~ 25742121 (-) True G223283
TU302177 lncRNA downstream 16608 25722490 ~ 25725969 (-) True LOC120552722
TU302112 lncRNA downstream 21396 25711820 ~ 25721181 (-) True G223239
TU302114 lncRNA downstream 25554 25658589 ~ 25717023 (-) False G223239
TU302111 lncRNA downstream 25554 25709043 ~ 25717023 (-) False G223239
TU302220 lncRNA upstream 34409 25799721 ~ 25800693 (-) True G223301
TU302226 lncRNA upstream 43452 25808764 ~ 25896644 (-) True G223303
TU302228 lncRNA upstream 59050 25824362 ~ 25826846 (-) True G223305
TU302240 lncRNA upstream 149945 25915257 ~ 25915749 (-) True G223314
TU302244 lncRNA upstream 163327 25928639 ~ 25930103 (-) True G223318
XM_039790946.1 mRNA downstream 3637 25724700 ~ 25738940 (-) False LOC120552722
XM_039790602.1 mRNA downstream 35934 25684062 ~ 25706643 (-) False acot9.1
XM_039790601.1 mRNA downstream 35934 25684062 ~ 25706643 (-) True acot9.1
XM_039790603.1 mRNA downstream 38603 25684062 ~ 25703974 (-) False acot9.1
XM_039790600.1 mRNA downstream 59309 25669233 ~ 25683268 (-) False pdha1b
XM_039790610.1 mRNA upstream 31973 25797285 ~ 25812783 (-) False lrrc34
XM_039790607.1 mRNA upstream 35793 25801105 ~ 25812783 (-) False lrrc34
XM_039790605.1 mRNA upstream 35793 25801105 ~ 25812783 (-) False lrrc34
XM_039790604.1 mRNA upstream 35793 25801105 ~ 25812783 (-) True lrrc34
XM_039790608.1 mRNA upstream 35793 25801105 ~ 25811819 (-) False lrrc34
TU302187 other downstream 3693 25730756 ~ 25738884 (-) False LOC120552722
TU302146 other downstream 180037 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 655869 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 774587 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 3524211 22202783 ~ 22218366 (-) False smpx
TU302229 other upstream 62779 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 62779 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 218282 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 276531 26041843 ~ 26042864 (-) False G223328
TU302257 other upstream 276531 26041843 ~ 26042864 (-) True G223328

Expression Profile