RNA id: XM_039790596.1


Basic Information

Item Value
RNA id XM_039790596.1
length 1898
RNA type mRNA
GC content 0.55
exon number 13
gene id pdha1b
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25669233 ~ 25683270 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGACGGACACTAACACGGATTTAGAACCTAGCAGCAGCGATTACCGTCCACCGTTTTAATCCCTTCAGAGCCGGCTCGTCGCTTCAGTAGCATGAAAAATATGTTAACCATTATCTCTAACGCACTTTGTAGGATCACTGGCAGGAATGTGGGAGCCCAAACAGTGTCCGAGACTCTGTAGAGCTCCTCTGGCTGTGAtctggtctgattggttggctCCTGTGTTCCCCCAGTTGCTGATTGACCTGTCAGAGTACGTCAATGTAACTTCGCCGGTGTCGGCGCCCGCCTTGGCACAGGCCCAGGCCCAGCGGCAACCACCTAAACCACCACCAGTCAGTACTAGAGCGCCTGCTGCACAGTTAGTTAGCGCTCAGACCGACCAGCTAGACACACCAGGTACCAGAGTCGTGGTTTCCCGCTCCTTCGCTGACTTCACCTCTCAGGCGACCTTTGACATCAAGaAATGCGACGTGCACCGTCTGGAGGAGGGCCCCCCGCTGAAGGCGGAGCTGACTCGGGACCAGGGGCTGCAGTATTACCGTGTCATGCAGACCGTGAGGCGCATGGAGCTCAAAGCTGATCAGCTCTACAAACAGAAGATCATCAGAGGCTTCTGTCACCTGTATGATGGACAGGAAGCATGTGCCGTGGGCATCGAGGCGGCCATCAACCCCTCGGATCACCTGATCACCGCCTACCGCGCCCACGGGTATACGTACACACGCGGTATCGCCATCAAAGAGATCCTGGCCGAGCTCACAGGTCGTAGAGGCGGTGTGGCCAAAGGAAAAGGAGGCTCGATGCACATGTACGCTCCACATTTCTACGGAGGCAACGGCATCGTGGGAGCACAGATTCCTTTAGGAGCCGGCATCGCCCTGGCCTGCCAGTACCAAGGCAACAATCAGGTGTGTGTCGCACTCTACGGAGACGGGGCAGCCAATCAGGGCCAGCTGTTTGAGTCGTTCAACATGGCCGCCCTGTGGAAGCTGCCGTGCATCTTCACCTGCGAGAACAATCAGTACGGTATGGGGACGTCGGTGGAGAGAGCGTCAGCCAGCACCGACTACTACAAGAGAGGAGACTTCATACCGGGAATCAGAGTGGATGGGATGGATGTCCTGTGTGTCCGAGAGGCTTTCAAGTTTGCTGCAGAACACTGCAGGTCTGGAAAGGGTCCCATTGTAATAGAGCTGAAGACTTACCGTTACCATGGACACAGCATGAGTGACCCGGGCGTCAGCTACCGCACCCGGGAGGAGATTCAGGAAGTGCGCAGTAAGAGTGACCCCATCACCATGCTGAAAGAGCGCATGCTCAGCAACAACATGGCGTCTGTGGAGGAGTTCaagGAAATTGACATTGCGATCCGtaaggaggtggaggaggcggCTCAGTACGCGACGTCGGACCCAGAGCCGCCGCTGGAGGAGCTGTGCAACCACATCTTCAGCAACGACTCGCCGCTGGACGTCCGCGGGACAAACCCCTGGGCCAGGCTCAAGTCTGTCagctagagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccccaacctTCCACCCAGCACTAAACGAAGCCCCTTTAGCTGCACCGACACCCTGACTTTTGAAGAAATAACATCCAGCACCTCCTTCCTCGATGTTGAGATCATTCCGCACCTTAATGGGACTCAGCTTTGACCTGAAACCTctcagtgttatttatttatagttttataTAGAAATATTTAAGATGTAGATTtattctttgtctgtctgtgtgagtttGCTCTGCCGTAAATCTCACCACTCGGTTGGTGTTGGACCTCGAGCCCCGGTCAGCTGCTGCCAGATGTTTGGGGTG

Function

GO: NA

KEGG:

id description
K00161 PDHA, pdhA; pyruvate dehydrogenase E1 component alpha subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302169 lncRNA downstream 31995 25636454 ~ 25637238 (-) True G223270
TU302163 lncRNA downstream 64450 25604270 ~ 25604783 (-) True G223269
TU302157 lncRNA downstream 87029 25578299 ~ 25582204 (-) True G223265
XR_005637983.1 lncRNA downstream 106797 25556586 ~ 25562436 (-) False LOC120552299
TU302129 lncRNA downstream 127791 25471720 ~ 25541442 (-) True G223252
TU302179 lncRNA upstream 17555 25700797 ~ 25770143 (-) True G223277
TU302111 lncRNA upstream 25801 25709043 ~ 25717023 (-) False G223239
TU302113 lncRNA upstream 25801 25709043 ~ 25710601 (-) False G223239
TU302112 lncRNA upstream 28578 25711820 ~ 25721181 (-) True G223239
TU302177 lncRNA upstream 39248 25722490 ~ 25725969 (-) True LOC120552722
XM_039790589.1 mRNA downstream 8502 25591480 ~ 25660731 (-) True rps6ka3b
XM_039790590.1 mRNA downstream 26719 25591480 ~ 25642514 (-) False rps6ka3b
XM_039790588.1 mRNA downstream 39818 25591480 ~ 25629415 (-) False rps6ka3b
XM_039790586.1 mRNA downstream 39821 25591480 ~ 25629412 (-) False rps6ka3b
XM_039790214.1 mRNA downstream 95268 25563886 ~ 25573965 (-) True eif1axb
XM_039790602.1 mRNA upstream 820 25684062 ~ 25706643 (-) False acot9.1
XM_039790601.1 mRNA upstream 820 25684062 ~ 25706643 (-) True acot9.1
XM_039790603.1 mRNA upstream 820 25684062 ~ 25703974 (-) False acot9.1
XM_039790946.1 mRNA upstream 41458 25724700 ~ 25738940 (-) False LOC120552722
XM_039790593.1 mRNA upstream 59335 25742577 ~ 25765312 (-) True klhl15
TU302146 other downstream 106693 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 582525 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 701243 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 3450867 22202783 ~ 22218366 (-) False smpx
TU302187 other upstream 47514 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 144849 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 144849 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 300352 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 358601 26041843 ~ 26042864 (-) False G223328

Expression Profile