RNA id: XM_039790602.1


Basic Information

Item Value
RNA id XM_039790602.1
length 2085
RNA type mRNA
GC content 0.51
exon number 15
gene id acot9.1
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25684062 ~ 25706643 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACGCAGTGGGCGTGGCCAAACACCAACACGGAAGCCGTTCCTGTGGTCCTGACTTGCCTGGCACCGCAGTACCCTCAAGAGGAAAATCTGTGATATTTGTCCCTTTCTACCGAGCTCACCGGCTTTATCTGGATCCCTTTAACCCTTTAACGGTGACATCCGGGACACTACAATGCTCTCACCGAGGTTCCTGCTGCTGAGGTCAGCTGCGTCCTTCACGGCCAGGTCCTTCTGCGCGGCGGGGGGCGTGTCCAAGCCCGGCAGGGCGCCGGACATGGCAGAAGTGCGAAACAGGCTGAGAGAAATCGTGGGAGCTTCCACTAACTGGAGGGACCACCAGCAGGCCATGTCGGAGCGCCTGTCGCTGTCGTCCATGTTGGCGAAGTCTCAGAACGATCTTCCAGCCAAGACGATGAAGGACAGCTACCTGGAGGTGCACCTGCCTCTGGGCTCCGAGCCACAGCTCCGAGAGAAATACCTCACCTTCCACAACACtgtcagGTTTGGGAGAATCCTGGAGGACTTGGACAGTTTAGCAGtcCTCATCTCTTACTCTCACACCTACAATCCGACACTGAAGAGGTCTCCGCTGTCCATCGTCACCGCCCTGGTGGATAAGATCGACATGAGGCAGCACGTCATCTATCCTGACTGCGACATCAAGTTCACCGGTCATGTGACGTGGGTGGGAAAGACTTCTATTGAAGCCAAGATGCACATGTCacagTACGTTAACGGAGCGTATACCCCGGTCCTGGATGCTACGTTTGTCATGGTGGCCCGGGATCCAGAAAACAAGAGGGCAGCTTTTGTAAATCCACTGAAGCCTGAAGGtccagaggaggagagactttTCCAGGAAGGAGAAGCCAATAAATCCCGCCGCGTGGCTCTGAGCACCGCGTCGCTGCTGAAGGTGGCGCCCACAGACGAGGAGAGGAAGATCGTACACAGTCTGTTCCTCAACACGCTGGACACAAAgACGGTTAGTTTCCGGAGCAGAATTCTGCCTCCAAACTCAGTGTGGATGGAAGACGCCAAAGTGAAAGGACTGGAGATCTGCCACCCTCAGGAGAGGAACATCTTCAACAGGATATTTGGAGGTTTTCTGATGAGGAAAGCCTACGAGTTGGGCTGGGCCAACGCCTGCTCCTTCGGAGGATGTCGACCCAGTCTGGTGGCTGTTGACGATATCCTCTTCCAGAAACCCGTGGACATCGgctcgctgctgctgctctcatcACAGGTGTGTTACACACAGGGGAATCACATCCAGGTCAGAGTTCACAGCGAGGTGTTTGACCCTCTGACCCGCCAGCACAACACCACCAACGTCTTCCACTTCACCTTCTTTTCTGACCGCGACGTCCCCAACATCATCCCAATGACATACGGAgAGTCGATGCTTTACCTGGACGGGAAGAGACACTTCAATCAGACTGTGGAGCCCTGAACGCAACATGTCTGCTGCCTGCCaaaacctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcttgtgcgcgtgtgtgtgtgtgtgcgtgtgcgtgcatgtgtgtgtgtcggaggtCAATTGAGAAGAATAAATGCACTTCATACAGTATACATCCTTTTTACATCACGCCTTGTTAAACCTTACAGACCCCACATGGTAACCATGTTTGATTCTTGTTACTTTATGTGTTCCGGTATcgtttactgtatattttatttcCTCTTTGTTTCACAGTtgtaaccaaggttacaacaaCCAGGCGGCTCGTTTGACAGCCAGTCAGCGTTTACAACTTCTCAACATTTAAACGTTTTCCTGGCCTTGTCATAACCTCATTTATTCCTGATTGCTTTACGGTTTTTATATTCCACTGTCGCTTATACGCacacaacttttctttacttttattttataatgaaTGGCAAGCTTTATTCTGAATGTGTCAGGCTGCTGCGAGATGGAGGAGGGAGCATTTTTCTGGCCTTACGTCATGTATTTACTCAAATGCAATAAATGAATTCTTATTTATGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302169 lncRNA downstream 46824 25636454 ~ 25637238 (-) True G223270
TU302163 lncRNA downstream 79279 25604270 ~ 25604783 (-) True G223269
TU302157 lncRNA downstream 101858 25578299 ~ 25582204 (-) True G223265
XR_005637983.1 lncRNA downstream 121626 25556586 ~ 25562436 (-) False LOC120552299
TU302129 lncRNA downstream 142620 25471720 ~ 25541442 (-) True G223252
TU302111 lncRNA upstream 2400 25709043 ~ 25717023 (-) False G223239
TU302113 lncRNA upstream 2400 25709043 ~ 25710601 (-) False G223239
TU302112 lncRNA upstream 5177 25711820 ~ 25721181 (-) True G223239
TU302177 lncRNA upstream 15847 25722490 ~ 25725969 (-) True LOC120552722
TU302186 lncRNA upstream 32991 25739634 ~ 25742121 (-) True G223283
XM_039790597.1 mRNA downstream 792 25669233 ~ 25683270 (-) False pdha1b
XM_039790598.1 mRNA downstream 793 25669233 ~ 25683269 (-) False pdha1b
XM_039790600.1 mRNA downstream 794 25669233 ~ 25683268 (-) False pdha1b
XM_039790599.1 mRNA downstream 794 25669233 ~ 25683268 (-) False pdha1b
XM_039790596.1 mRNA downstream 820 25669233 ~ 25683242 (-) True pdha1b
XM_039790946.1 mRNA upstream 18057 25724700 ~ 25738940 (-) False LOC120552722
XM_039790593.1 mRNA upstream 35934 25742577 ~ 25765312 (-) True klhl15
XM_039790610.1 mRNA upstream 90642 25797285 ~ 25812783 (-) False lrrc34
XM_039790607.1 mRNA upstream 94462 25801105 ~ 25812783 (-) False lrrc34
XM_039790605.1 mRNA upstream 94462 25801105 ~ 25812783 (-) False lrrc34
TU302146 other downstream 121522 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 597354 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 716072 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 3465696 22202783 ~ 22218366 (-) False smpx
TU302187 other upstream 24113 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 121448 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 121448 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 276951 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 335200 26041843 ~ 26042864 (-) False G223328

Expression Profile