RNA id: XM_039790608.1


Basic Information

Item Value
RNA id XM_039790608.1
length 1345
RNA type mRNA
GC content 0.58
exon number 10
gene id lrrc34
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25797285 ~ 25812783 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcttcaggtttatggacgcgctcagctgtggacatgctgcgGAGTGTGACCTTAAAACTGACAGGAAACAACCGCCTGACAAACGTCAAGCGACTCAACGACGACGACGTTCTCGCTCTCTCTGAATGTTTGAGAAACAACCACAGCGTGTCAGGTCTTGATGTCCGGTACAATAACATAACAGATGTAGGGGTGGGACACCTCGTTGGCCTCTTACAGCAGGAGGACGGCTCAGCTCTGCGCTCTCTGGACCTGATGTTCAACGACATCCTGAGAGACGGAGCCGAAGTTCTCGCCAAGAGCCTGCAGtgtaACAGCACCTTGCTCTCTCTCCGACTGTCAGGAAATAAGATCGGGAACAGAGGAGCCATGCACCTGGCCAGCATGCTGCAGGTCAACAGCACCCTGAAGGAGCTGCAGCTGGCTGACTGCGAcctgGACACTCAGAGTGTGATAGCGTTTGCCATCGTGTTGAAAAGCAACGAGACTCTCGTCTCTGTCGATATCAGCCGGCCGCTGCTCTTCAGCCACCAGGAGGAGTGCGCGGTGCACTTCTCGGAGATGCTGGTGGTGAACAGCAGCCTGGTGGAGCTCCACCTGGGGAAGATGGGGATGACCGACACCGGGATGGAGAGGCTGACTGAAGGCCTGCGGCTCAACCACAGCCTGCGCTACCTGGACCTGCGCTGTAACCGCGTGACTCGTGATGGCGTGCGTCTCCTAGCCGAGCTGCTGAAGCAGAACCAGACCCTGGAGATCGTAGATCTGTCGTCCAATCGGATTGAAGATGATGGTGCTGGGTACCTGAGCGAGGCCATCGCCTGGCCAGGCTGCGCCCTGAGAGAGCTGTCTGTCAGCAGTAACAACATCAGGTCGGAGGGTCTGCTGTCTCTGGCTCGGGCTCTGACAGTCAACACAGCTCTGAACCACCTCTACATCTGGGGGAACCACCTGGAGGAGGCGGTCTGTCAGGCCTTCAGAGAGCTGATCGCCAGCGGCCGCCTGCCCGCGGAGCAGACCGACGTCAGCGCGTACGAGGTGGACGGTCGGGTGTTTCTCGCGGAGCTCTTCCACAGTTTGAGGAGAAACTATTACGGCACAAACGGCTCCGGTACAAACACATCCTTCACCTCCGACACGCCAACAGACCCGCTGACAGACAACGGCGCCGGGCGCCACTCCACCCTCCCGCCACACGTTGAGAGTCAGCAGATTGTTGTTCCCCTGCAGTCCTGCTAGGGCtctcattaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302220 lncRNA downstream 412 25799721 ~ 25800693 (-) True G223301
TU302192 lncRNA downstream 51392 25748479 ~ 25749713 (-) True G223288
TU302193 lncRNA downstream 51392 25748479 ~ 25749713 (-) False G223288
TU302196 lncRNA downstream 52094 25748479 ~ 25749011 (-) False G223288
TU302186 lncRNA downstream 58984 25739634 ~ 25742121 (-) True G223283
TU302228 lncRNA upstream 12543 25824362 ~ 25826846 (-) True G223305
TU302240 lncRNA upstream 103438 25915257 ~ 25915749 (-) True G223314
TU302244 lncRNA upstream 116820 25928639 ~ 25930103 (-) True G223318
TU302246 lncRNA upstream 121178 25932997 ~ 25935547 (-) True G223320
TU302245 lncRNA upstream 125974 25937793 ~ 25939788 (-) True G223319
XM_039790593.1 mRNA downstream 35793 25742577 ~ 25765312 (-) True klhl15
XM_039790946.1 mRNA downstream 62165 25724700 ~ 25738940 (-) False LOC120552722
XM_039790602.1 mRNA downstream 94462 25684062 ~ 25706643 (-) False acot9.1
XM_039790947.1 mRNA upstream 5610 25817429 ~ 25833940 (-) True mynn
XM_039790611.1 mRNA upstream 289069 26100888 ~ 26110027 (-) True cldn11b
XM_039790127.1 mRNA upstream 298588 26110407 ~ 26148023 (-) True si:ch211-230g15.5
XM_039790129.1 mRNA upstream 298588 26110407 ~ 26148020 (-) False si:ch211-230g15.5
XM_039790128.1 mRNA upstream 298588 26110407 ~ 26147104 (-) False si:ch211-230g15.5
TU302187 other downstream 62221 25730756 ~ 25738884 (-) False LOC120552722
TU302146 other downstream 238565 25556473 ~ 25562540 (-) True LOC120552299
TU302014 other downstream 714397 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 833115 24963445 ~ 24967990 (-) False msl2b
TU300142 other downstream 3583556 22202783 ~ 22217549 (-) True smpx
TU302229 other upstream 16272 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 16272 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 171775 25983594 ~ 25993497 (-) False G223331
TU302256 other upstream 230024 26041843 ~ 26042864 (-) False G223328
TU302257 other upstream 230024 26041843 ~ 26042864 (-) True G223328

Expression Profile