RNA id: XM_039790628.1


Basic Information

Item Value
RNA id XM_039790628.1
length 1056
RNA type mRNA
GC content 0.45
exon number 8
gene id chmp5b
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19054260 ~ 19058076 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTCTCTTCCGGGTGTTTTCCTTCAGCTGGACGGTGGACGGTGACAGTGAGCTAccttagcttttttttttaagtgttaaagCCTTAATTTTTGCCGAAATGAACCGAATTTTTGGCAGGGGAACACCCAAAGCTCCACCGCCGAACCTTACGGACTGCATAGGAACCGTTGATTCTCGTGCGGAATCTACTGACAAGAAGATTGCCAGACTAGATGCTGAACTTGTGAAATACAAGGACCAGATGAAAAAGATGAGAGATGGGCCCTCAAAGAACATGGTCAAGCAAAAAGCTATGAGAGTTCTGAAGCAGAAGCGAATGTATGAGGGCCAGAGAGATAACCTCATGCAGCAGTCGTTTAACATGGAACAAACAAACTACACACTCCAGACCCTTAAAGACACTAAAACCACTGTTGATGCCATGAAAATCGGCCTCAAAGACATGAAGAAGGCATACAAGCATGTGAAAATTGATCAGATTGAGGATCTTCAGGATGAGCTCGGGGACATGATGGAGGATGCCAATGACATCCAGGAGGCGCTGGGAAGAAGCTATGGCACGCCTGAAATTGATGACGACGACTTGGAAGCAGAGCTGGATGCTTTGGGAGACGAGCTCCTGATGGATGACGACAGCTCCTACCTGGACGAGGCTTCAACAGCTCCTTCCATCCCAGAGGGCATGCCCGGCGACAAGTCTGTCAACAGGGACGGTGTCCTGGTGGACGAGTTTGGCCTTCCTCAGATTCCTGCTACATAAAGGAGCAATCCGAACACTCGTGCTAGTTTTACATGTATCTTcgcctttttttgtatttatctaACTGACACTCCCAGCCTTAGGGTGCAGCATTGAAAACCAGAACATCTTCTGTGCAACGAATGATGAACTACAACTTCAGGCATCTTTAATTAAAAGTTCACTATTATTCTATGAGTGAGCTTCTATGTGTATCTGAGGTGATTGTTTGAATTGGGATTCTCTTAACTTTGTACAGTTTCTGCAGCGTTTGTCGCCAAGAacaaaataaattttatttttcaaacaatAAA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process

KEGG:

id description
K12198 CHMP5, VPS60; charged multivesicular body protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299030 lncRNA downstream 11044 19040265 ~ 19043216 (-) True G220972
TU299031 lncRNA downstream 11044 19040265 ~ 19043216 (-) False G220972
TU299033 lncRNA downstream 11044 19040265 ~ 19043216 (-) False G220972
TU298921 lncRNA downstream 224275 18829751 ~ 18829985 (-) True G220893
TU298915 lncRNA downstream 237882 18815906 ~ 18816378 (-) True G220888
XR_005637963.1 lncRNA upstream 258578 19316654 ~ 19317227 (-) True LOC120552156
TU299179 lncRNA upstream 314515 19372591 ~ 19374516 (-) True G221086
TU299181 lncRNA upstream 378890 19436966 ~ 19439539 (-) True G221088
TU299185 lncRNA upstream 387969 19446045 ~ 19446294 (-) True G221090
TU299191 lncRNA upstream 459296 19517372 ~ 19544392 (-) True G221095
XM_039790246.1 mRNA downstream 17427 19006643 ~ 19036833 (-) False myom1b
XM_039790244.1 mRNA downstream 17427 19006643 ~ 19036833 (-) False myom1b
XM_039790242.1 mRNA downstream 17427 19006643 ~ 19036833 (-) False myom1b
XM_039790243.1 mRNA downstream 17427 19006643 ~ 19036833 (-) False myom1b
XM_039790241.1 mRNA downstream 17427 19006643 ~ 19036833 (-) False myom1b
XM_039790978.1 mRNA upstream 1631 19059707 ~ 19065576 (-) True LOC120552750
XM_039790453.1 mRNA upstream 11087 19069163 ~ 19070616 (-) True LOC120552400
XM_039790451.1 mRNA upstream 11087 19069163 ~ 19070417 (-) False LOC120552400
XM_039790357.1 mRNA upstream 54120 19112196 ~ 19118982 (-) True lypla1
XM_039790858.1 mRNA upstream 123974 19182050 ~ 19195523 (-) False LOC120552661
TU298948 other downstream 104779 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 422785 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 429462 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 2178960 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 2259136 16783069 ~ 16795124 (-) False LOC120552205
TU299133 other upstream 257515 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 1778221 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 2931941 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 3144707 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 3144707 22202783 ~ 22217549 (-) True smpx

Expression Profile