RNA id: XM_039790630.1


Basic Information

Item Value
RNA id XM_039790630.1
length 3413
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC120552510
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 20572208 ~ 20732251 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGATTGCCTTTTGTCAAGCTGcaagctgattggctgtttgCCACGGGCTGCTCTCCTAGTTGTCTTTCGTTCGTTAGAGAAGTTAGTAAATTAACTGCGATTTGGAttaggcagctagctagctatattctACAGCATACGTTTTAAAATCCGTCTTTTAAAGACaatttaaagattaaaaacCTCGGTGCACATCAGCACCGGGATATTGTTATAAGCCAAACCTTTGGTAAACATAATATAATTGATTTAGCTAACGTGGAGTGGTTCTCCAGAACAAAACGGTTAcctactaacgttagcttgtcaAAGAAGACGCATTTCGCTTCCCGTGTGTGTCAATAATCGAAGAGGATGGTAACTGGTTACGAACAGGATTTCAGGACCTCAAGCATCTTTCTGAGAGAGCTGACCAAACAGAAAAGCAGCGAGACAACGCGGTAAAGTTCGACTTGCTCAGCAAAATCAACTACCCAAGCTGACAGCGCATACCAACAGGAACTTTTCTCCCCCGGCACATGTTGTCTACGGAGTCTGGCTAAAAATCAGTAGCTGGCATGCTGTCCTTGCCCAAATACTGTAACCACTACAATCTCTACCAAGATTAAGCCAAGTGCCAATTATACAGCCTGCGTGTTGAAGCCTGCCCGGTCGCAACTGACCCTGTTACCCAGCTTTAATGTCAACTCTTTGGCTCCTAAGTGGAGGGAATTACCCCACTTTTAGTCGCCaatcaggaaaagaagaagagcaACACAGCAAAATGCAGAGCTTGACTCTTTTTTAACCCATGCGCTCTTTTCAGTGTCTGACTGCTCTTGCTCTTTGGTGAAACAGGGTCAGGACTGTGTGGATAAAACCCTGAGGGTTTTGACATTTCAGCctcactgtgtttttttttatatatatatatacttttgcTCCTCCTCTGGCCTCGGTGCTTTTTGGAAAGGGCCCAGATGATGGGGGGGCGTTGCTCAGGCATATGCAGAGCCCTGGCTCTCTTGGCACTCCTGTTTCCCTTGCGAGAGAGGGGCTGCTGGGGGCTGAATCCCAGCTCTGGGGATCTGGAGAAGTCCCCACACTCTGATCCAGACCCCTGGGAGGCACTGCTCAGGCACAAACGCAGCTGGGTATGGAACCAGTTCTTCGTATTGGAGGAGTACACAGGAAATGAACCACTCTATGTTGGCAAGCTACACTCAGATGTGGACAAAGGAGATGGCAAGGTGAAATATGTGTTAACTGGCGAGGGCGCCACCTCCATCTTCACCATTGATGAGAACACAGGGGACATCCACGCCACAAAGCGCCTTGATCGGGAGGCACAGCCCTACTACACCCTCCAAGCTCAAGCTGTAGACCGAGTCACCAATATACCCGTAGAGCCCAGGTCTGAATTTGTGGTCAAGGTCCAGGACATCAACGATAATGAGCCAAAGTTTCTTGATGGACCATACTTGGCAGGGGTACCAGAGATGTCACCCTTAGGAACCATGGTAGTGCAAGTGGCAGCCACAGATGCAGATGACCCAACATATGGGAACAGTGCCAGGGTGGTCTACAGCATCACCCACGGACAGCCATACTTCTCAGTGGAGCCTAAGACAGgTGTCATTAGAACAGCTCTGCCCAACATGGACCGGGAGACGAGGGACCAGTATGTGCTTGTCATCCAGGCCAAAGACATGGTCGGCCAGAACGGTGGCCTCTCTGGCACCACCTCTGTCACTGTCACGCTTACCGATGTCAACGACAACCCGCCTCGGTTCACTCACAAGAACTATCAGTACACGGTTCTGGAGTCGTTGCCGGTGCAATCTGTGGTGGCCAGAATCAAAGCGGCCGACGCTGATATAGGCTCCAACGCAGAGATGGACTACAGGATCATGGACGGCGACGGGCCTGGCATGTTCAACATAACAACAGATGAGAACACACAAGACGGGGTTATCATCCTTCTGaagCCTTTAGATTTTGAAACAAAGAGCAGCTTCTTTCTGAGAATCGAGGCCACAAACAGGAATATTGACTCCAACTTCTTGAGCTTGGGCCCATTTAGCGACACAACATCAGTCAAAGTGATGGTGGAAGATGTGAATGAGCCACCTGTCTTTTCCACACCGCTTAGCAAGATGGTTGTTTCAGAAGATGCTAGAGTGGGCACATCAATCGGAAGAGTCTCTGCCCATGACCCAGACAACTCCAACAATGCCATCAGGTACTCCattgacagaaacacagacttGGAACGCTTCTTTAACGTGGACGCTCTCAGTGGTGTCATCAGCACAGCCAAGCCTCTGGACCGAGAGGCCAACTTGGTCCATAACCTCACTATCTTTGCCATCGAGAGCCaGGACCCAACCCAAATTGGAAAAGGCATCGCTCTCATTACAGTGCTGGACATAAATGATAATGCCCCGGTCTTTGCCATAGATTATGAAACCCTCCTCTGTGAGAACGCCATGCCAGGGCAGGTGATTCAGACCATCAGTGCAGTGGATAAGGACGAACCTCTGAGTGGTCACCGCTTTTATTTCGCCCTGGCTGCACCTGTTGCCGGCAACCTCAACTTCACCCTGCGAGATAACAAAGACAACACAGCGTCCATACTGACGAAGCGAGGCGGTTTCAGGAGACGGGAGCAAGCTGTGTATCGGCTGCCGGTGTTGATTGTGGACAGCGGAAGTCCTGCCCTcagcagcacaaacacactctcagtGCGAGTGTGTGACTGTGACTCTGACGGCGTGGCCTTGTCTTGTGGAGCTGTGGCCTACACCGCGACTGGCCTGAGCACCGGCGCCCTCCTGGCTATTTTAGGCTGCATCATCACACTTCTGGTGATGGTTCTGCTAATTGTGACTATGCGTCGGAGGAGGAAGGAGCCTCTGATTCtcgaggaggagagggacatcAGAGAGAACATTGTCCGCTACGACGACGAGGGTGGGGgagaggaggacacagaggcCTTTGACATGGTTACTCTCCGCAACCTAAACGTCATCAGAGATCCCAACGTTAGGCGAGACGTCACACCAGATACTCCCACCTTCTTTCATTACCCATCAACTACTCGCCCATCCTATAAATCCCTACCAGACAACGTGGTGTTTCGAGAGTTTATTTGGGAGCGACTTAAGGATGCTGATGTGGACCCGTCAGCTCCCCCGTATGACTCTCTGCAGACATATGCTTTTGAAGGCAGCGGCTCTGTTGCAGAGTCACTAAGCTCTTTGGAGTCACTAAGTACAGACTCAGATCAGAACTATGACTATCTCAGCAACTGGGGAccacgcttcaaaaagctggCTGACCTGTATGGCAACAGTGACGGCACCAGTGTCTTCTCATAGCCCCTAAATGTCTCTCTTAACATTTCTCAGacttatggaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K06799 CDH7; cadherin 7, type 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299578 lncRNA downstream 4424 20567559 ~ 20567784 (-) True G221385
TU299546 lncRNA downstream 102755 20469146 ~ 20469453 (-) True G221359
TU299468 lncRNA downstream 310053 20168681 ~ 20262155 (-) False G221287
TU299469 lncRNA downstream 310053 20172903 ~ 20262155 (-) False G221287
TU299467 lncRNA downstream 310053 20258703 ~ 20262155 (-) True G221287
TU299623 lncRNA upstream 29608 20761859 ~ 20762077 (-) True G221415
TU299625 lncRNA upstream 34348 20766599 ~ 20766961 (-) True G221417
TU299644 lncRNA upstream 63620 20795871 ~ 20821240 (-) True G221433
TU299690 lncRNA upstream 180235 20912486 ~ 20912751 (-) True G221471
TU299691 lncRNA upstream 228377 20960628 ~ 20960830 (-) True G221472
XM_039790090.1 mRNA downstream 381702 20179556 ~ 20190506 (-) True prpf4bb
XM_039790937.1 mRNA downstream 516999 20020133 ~ 20055209 (-) True LOC120552713
XM_039789949.1 mRNA downstream 553219 20002456 ~ 20018989 (-) True topbp1
XM_039789951.1 mRNA downstream 572958 19958284 ~ 19999250 (-) True tmem108
XM_039789573.1 mRNA upstream 2775 20735026 ~ 20741393 (-) False LOC120551976
XM_039789576.1 mRNA upstream 2775 20735026 ~ 20741391 (-) False LOC120551976
XM_039789574.1 mRNA upstream 2775 20735026 ~ 20739166 (-) False LOC120551976
XM_039789575.1 mRNA upstream 2775 20735026 ~ 20739166 (-) True LOC120551976
XM_039790579.1 mRNA upstream 15496 20747747 ~ 20758794 (-) False LOC120552480
TU299133 other downstream 1245314 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 1622727 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 1940733 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 1947410 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 3696908 16874649 ~ 16875300 (-) True G220412
TU299660 other upstream 104046 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 1257766 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 1470532 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 1470532 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 4231194 24963445 ~ 24967990 (-) False msl2b

Expression Profile