RNA id: XM_039790650.1


Basic Information

Item Value
RNA id XM_039790650.1
length 1113
RNA type mRNA
GC content 0.57
exon number 8
gene id LOC120552519
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 5724235 ~ 5729256 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTGGGTAAACTGTTATGTCTGCCCTGCACGTTGACATTGTGCTAGTGAGCTGACAGAAGAACTTGTCACACAGGTCagtccttcttcttctttctcccgctctctgtgtgttcgcTGCGACGAACAGAAAGGGACGGAGGCGTCCGGAACCTGCTGCTGTTAACGGCTGCTGTGTTTACAGGCGCTTACACACCGGGCGGCTAACGTAAGCATAACCGCTAACGTTCACCGGGAGGTTAACCAAGGAGGATAACTTctgTGCAGGATGGGAGCCTCGCTGTCCACACCTGCTGCTCCTTCAGTCAGGGCGGAGGCCATGATGGCCACCCCCCCTCCGGGCTGCCCCATGCACCAGGAAGCCCAGCCTGTCAAAGTGTCTCCACCTCCAGAGTGCCCCATGCATCAAGCTCAGCCTGTGAAAGCGTCTCCTCCGCCGGAGTGTCCGATGCACCGTGCAGAGCCAGGTCCAGCTCACCAGGAACGGGCCTATGAGTTTGTGGAGTGTCCCATGAAGGCGGCAGAAGGCATGAAGAGTGACATCGACCCATCAAATATGATGCCTCCCCCGAACCAGAAACCAGCTCCAGACCAGCCCTTTGAACTCCCCGTGGCCAGACAGGAGTCCTCTATTCCCCGCCACGACACAGACAAGAAGTGGGTGTACCCATCGGAGCAGATGTTCTGGAACGCCATGCTGCGGAAAGGGTGGCGGTGGCGTGAAGATGACCTCGAAGCTCAAGATATGACCAACATCATTAAAATCCACAACCAGAACAACGAGCAGGCCTGGCAGGAGATCCTGAAATGGGAGGCCCTACATGCAGGTGAGTGTCCATGTGGGCCCACCTTGAAGAGGTTTGGGGGAAAAGCCAAGGAGTTCTCGCCCAGGGCTCGCCTCCGCCACTGGATGGGcTACGAGCTGCCATTTGACCGCCACGACTGGATCATCGACCGCTGTGGGAGGGAGGTGCGCTACGTCATTGACTACTATGACGGTGAGATCAACAAGGAGAACTACCAGTTCTCCATCCTGGATGTACGCCCCGCCTACGACTCTTTAGGCGCCGTCTGGGACCGTATGAAGGTGGCCTGGTGGCGCTGGACCTCctaa

Function

GO: NA

KEGG:

id description
K01764 HCCS; cytochrome c heme-lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637998.1 lncRNA downstream 68507 5639995 ~ 5655806 (-) False LOC120552435
XR_005637997.1 lncRNA downstream 68507 5639995 ~ 5655806 (-) True LOC120552435
XR_005638024.1 lncRNA downstream 118222 5598229 ~ 5606091 (-) True LOC120552525
TU295120 lncRNA downstream 166703 5556906 ~ 5557610 (-) True G218051
TU295045 lncRNA downstream 826848 4897243 ~ 4897465 (-) True G217992
TU295175 lncRNA upstream 59976 5789179 ~ 5789505 (-) True G218088
TU295176 lncRNA upstream 61560 5790763 ~ 5791025 (-) True G218089
TU295177 lncRNA upstream 63930 5793133 ~ 5793470 (-) True G218090
TU295178 lncRNA upstream 64892 5794095 ~ 5794306 (-) True G218091
TU295192 lncRNA upstream 69075 5798278 ~ 5799099 (-) True G218095
XM_039790331.1 mRNA downstream 769334 4899955 ~ 4954979 (-) True snx7
XM_039789734.1 mRNA downstream 1110586 4570417 ~ 4613727 (-) True LOC120552070
XM_039789739.1 mRNA downstream 1192073 4525301 ~ 4532240 (-) True LOC120552074
XM_039789748.1 mRNA downstream 1213704 4466851 ~ 4510609 (-) True rsu1
XM_039790047.1 mRNA upstream 118238 5847441 ~ 5848397 (-) True LOC120552212
XM_039790120.1 mRNA upstream 241991 5971194 ~ 6064050 (-) False LOC120552249
XM_039790119.1 mRNA upstream 241991 5971194 ~ 6064050 (-) False LOC120552249
XM_039790121.1 mRNA upstream 241991 5971194 ~ 6064050 (-) False LOC120552249
XM_039790116.1 mRNA upstream 241991 5971194 ~ 6064050 (-) False LOC120552249
TU295171 other downstream 23737 5700229 ~ 5700576 (-) True G218085
TU295077 other downstream 687609 5027505 ~ 5036704 (-) True G218019
unassigned_transcript_1391 other downstream 854708 4869524 ~ 4869605 (-) True trnas-gcu_51
unassigned_transcript_1390 other downstream 856143 4868089 ~ 4868170 (-) True trnas-gcu_50
unassigned_transcript_1389 other downstream 857769 4866465 ~ 4866544 (-) True trnas-gcu_49
unassigned_transcript_1409 other upstream 1571866 7301069 ~ 7301140 (-) True trnaw-cca_32
unassigned_transcript_1410 other upstream 1573493 7302696 ~ 7302767 (-) True trnaw-cca_33
unassigned_transcript_1411 other upstream 1612621 7341824 ~ 7341895 (-) True trnaw-cca_34
TU295672 other upstream 2465726 8194929 ~ 8195879 (-) True G218453
TU295702 other upstream 2701261 8430464 ~ 8430930 (-) True G218471

Expression Profile