RNA id: XM_039790663.1


Basic Information

Item Value
RNA id XM_039790663.1
length 5342
RNA type mRNA
GC content 0.51
exon number 46
gene id LOC120552530
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 22697027 ~ 22801749 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGCGTGGAGACATGGAGACAGTCCAGTGAGATTAAATGACATTATGGATATTAACCACTTTGCCTCCAcgaaggagagaaggaaggcCTTCGTCTTTAAATAACGCTGTCACACAAGAACGGGACAACTTTAGTTTGGATCTAAGCTTACCATCACTGAAGATGACTTCCCGCATTCCTCCCTGGCTCTTTGGATTACTTCTACTAGTGCTCCGGTTCTGCTGCCGTCGCTCCTCTGCTCAGCTGTTGGACGtcCGTGGTCCTCAGGGAGCCTTGGACCTGACAGAGTTGATCGGCGTTCCCCTTCCTCCTTCCGTCTCCTTTGTAACGGGTTTCGAGGGTTACCCCGCCTACAGCTTCGGCCCGGACGCCAACGTGGGCCGCCTCACAAAGTCATTCATCCCCGACCCGTTCTACTATGACTTTGCCGTCACGGTCACTGCTAAACCTACCACGCGGCGCGGCGGTGTCCTGTTTGCCATCACAGATGCCTACCAAAAGGTTGTGCACTTAGGTATAGCGTTGTCCGAGGTAGAGGATGGTTCCCAGAGAGTCATATTGTACTACACCGACCCAGGAACAACAGGGGGGACCCAGGAAGCAGCTTCCTTCAAAATGGGAGACCTGACGGGAAGATGGGCGAGGTTTACCCTGACCGTGCAGGGGACAGAGGTGCGTCTCTACATGGACTGTGAGGAATACCACCGAGTTGCCTTCACCAGGAGCCTGCAGCCTCTGACGTTCGAGGCCAGCTCGGGGATCTTCGTAGGGAACGCTGGGGGTACGGGCCTGGCGAGGTTTGTGGGCTCCATCCAGCAGCTGGTGCTGAAGTCAGATCCCACGGCCCCAGATGACCAGTGTGAGGAGGACGATCCTTATGCCTCTGGATACGGAAGCGGTGATGATGCTTACGAAGACATAGAGGGAATAGACGAAGTGAAGAAGATTGTGGAGGAGAGAGAGTACACCATGCCCATCCCAGAGCTGGACCCCACTTACAGCAGCCCAGTCCGAGCTCCGCCCACTGAGATGTCGCTGGGCGATGATGAGGACAATGATGAAGACATAGAGGAGACTTCTGGACAGGATGTTGAGATGACCACAATAAGAGTGAAATCATTTCAGACAGGTACTCCGGACCCCGTATTTGACTCTTCCCTCCAGGTGTCTCCGGGACAGAAAGGGGAGCCAGGTGAGCCAGGTCCAGCCGGTCCCCCAGGGCCACCCGGTCCCCCAGGACAAGCCTCAGGAGAGGGGGTGGGAGGGGAGCCGGGACCCCGGGGTCCACAAGGACCACACGGACCTTCAGGCCCACCTGGAGTTCCTGGGAAAGATGGACATTCTGGAAGCAAAGGTGAAACTGGTGCTCCAGGCGCAACTGGGATTCCAGGATTCCCAGGATTACAGGGAGAGCCTGGTCCTATGGGTGAAAAGGGTGATCCTGGTGTTGGACTACCAGGTCCTCCAGGCCCTCCTGGAATTCCAGGTCGACAAATCAAGTCTTCCATGTTCCTGGAGGGGTCAGGATTTGAAGACTTTGACAGTGATGCAGAGATTATTAGGGGGCCTCCAGGGCCGCCTGGCCTCCCGGGACAGCCAGGGCCCCCAGGAACCCCATCTGAGGACATCTTTCCTGGACCACCTGGGGCCCGTGGGAAAGATGGGAAGGATGGAGAGAAGGGTGAACCTGGACTGCCTGGAGTTGATGGAAAAGATGGGGATCCAGGACCTGCTGGGGAGAAAGGAGACAAGGGAGAGTCTGGTGTCAGCGGGCAACCAGGAGCAAAGGGAGATCAGGGCCCTGCAGGGTTTCCAGGCCTACCAGGCTCAGAGGGTCCAGAAGGGCAGCCTGGTCCCAGGGGGCCAGCCGGCCCCCCTGGGCCTCCAGGTCCCCCTGGGAGAGGCTACACCATGGACTTTGAGGACTTGGAAGGCTCTGGGATGCAGAATGGTTTAGGAGCTGCGCTCTCCAGAGGCCCACAGGGTCCTCCAGGAATCCCTGGACTTGAAGGACCAAAGGGTAAAGATGGTTTAGACGGCTCCACAGGAAAGCCAGGGCAAAAGGGGGAGGCAGGTGCTCCAGGACCAACAGGGATTCCAGGACTGGAGGGACTAAAAGGGGAAGAGGGACCAAAGGGGAACAGTGGAGAGCCAGGACAGAAGGGAGAGAGGGGCAGGGACGGGCTCAGTCTGCCCGGCCCTCCAGGACCACCTGGACCACCAGGATCCCTTACCAACCTCCAGGATCTTCTACTTAACGATACAGATGGTGCCTTGAACTTCTCAGGGATTTTTGACGCTCAGGGATCCGCTGGACCACAGGGTCCAAAGGGTGACATGGGGTTGCCAGGAGTTCAAGGACATCCAGGACTGAAAGGTGAAAGGGGTGAGCCAGGATTTATCATCGCTGCAGATGGATCCATGACGTCAGGCCTGGCTGTTCCAGTGGGACCCAAAGGAGACAAGGGAGATAATGGTGTACCCGGAGCCGCTGGAATTCCGGGGCCTATCGGACCACCAGGACCCAAAGGAGAATTTGGTTTTCCTGGAAGGCCTggtcgtCCAGGCCTGATGGGACTaaaaggagagaggggggactcTGCAGGCCTGCCGGGACGTCCTGGCCGTCCTGGGCTGCCGGGCCTCCCAGGAATATTCAACTGCCCCAAAGGAACCGTGTTCCCCATCCCTCCCAGACCCCACTGCAAAATGCCCGTTCGAAAATATTCCTGCATGCTGCATGTCCAGTCTGGAAAGGTGAAGGCCTACTGCCTATACAAAGATGAGCTTAATACCAATGGAACCATTGCAGCGGGTAACTGTCAGACGGGACTAAAAGGAGAAAAGGGAGATAGAGGCCTTCCTGGGATACCGGCGCCACCAAACACATTTTTTCGTAGTGGAGACTGGGTTGTAACTGGTGACGTGGGCATTAAAGGCGAGAAGGGAAACAAGGGGGAGGCAGGGTTTCCCGGGCAATCAGGTATCCCTGGGAGACCAGGACTTGTGGGACCCAAAGGAGAGTCTGTCGTTGGTCCACCAGGCCACCCTGGGGTGCCAGGTTCACCAGGTATCCCAGGCTATGGCAGAGCAGGACCGGTCGGCCCTCCTGGGCCACCCGGGCCTCCGGGACCCTCTGTGTCAACGCCAAGATATGGCTCAGCTTTGACCATTGCCGGCCCCCCTGGACCTCCTGGACCCGCTGGACCTCCTGGAGCTTCGGGTAACGCAGCATCTCTGAAAACATTTGCGAGCCGTGAGAGCATGATGCAGCACACCGTCAGGGATGCAGAAGGAACTCTGGCGTACGTCACAGCCACAGGAAGTCTCTTCCTAAAAGTCTCCCAGGGATGGAAAGAGATACAGCTTGGCAGTCTGATCTACCTCTCCAATAACATTATCCCGCAAGATGAGCCCCGAGTTGCATACCAGATAAGAGGTGACCTGATGGAAAGAATAATTTCAGTTAAAGAAAGGCTCAACCTGGTGGCTTTGAACCAGCCCCACTCAGGCGACATGATGGGGCTCGACGTAGCCGACCGGATGTGTTATGAACAAGCCAAGGCAATGGGTTTGGCTCCAAACTATCGCGCCTTCATTTCTTCCCAAAGGCAAGACCTGGTCCATGTGGTCTATCCTGGTTTCAGGGAAACTCTGCCCGTTACCAACCTCAGGGGAGATGTGATGTTTAGGAACTGGCGGTCAATTTTCAATGGCGACGGGGGACCATGGGATGCCAGGATACCTATCTACTCCTTTGACGGACGGGATGTTTTAGCTGACCCCTTCTGGCCTCAGAAGAGTATCTGGCACGGCTCCACCAGCAGGGGTTTCCGAGTGGTGGACAAGCACTGTGAGACGTGGCGAGCGGACCACATGTCTGTCATGGGCCAGTCATCGAGCCTGATCTCAGGTCTGCTCCTGGGCCAGCACACGCGGAGCTGTTCCAACCAGTACATCATTCTTTGCATCGAGACCCACAAAAACTCTTAAGTCCTCCGCCCCATACCACTCCACGAAGGAGCCCACCCCAGCCACTGTAAACGTTAGATTTGAGTGtctttcttaaaaaaaggacGTTGTTTTCAGCCCATCTTTGGTGCTACAGTAGGTGTAgcattttgtagtttttaaaaccGAGGACCACATTTAACACTCTGTGTTCTTTCTGAGTAGCGAGAAGATTATTAAGTGGCAGTAACAAACTCTTGACCACAGCCAAGATATAATCTGTGAGGGTAAACTAACGTCAAGGTTGATGCTACGCTGTGGAACTGGAATCATTTTGTGGATTGCGTGCAATCCAAATTTGCACCTTAAAGGAACGCCCCTTAGTGTTCTGCAGCAATCCAGAAGATTTCTCCTTATATTCAACCTGGTGGCACATAATGTTAAATGCAACACAGAGGCTGATGGAGGCTGCCAGTCTTCTTCTGTACCTATTAATGGCAATAATGCTAACATCTCAAAGAGAATGTGGTAATGATTTATTAACGTTAAAATGATACACGCAGCaccttttaacctttttttcaaAGGAAGTGGACTCATTTGCAACAAAAGAATCACAAATGACTTTTCCTAACATAGTCACCGAGGTGTGCTGAGAATAAGACGTctcttttttaaagtttatcGTCTAGTTGTGATTTCAAGAGAGTGAGGATGCAGCGGCTGCAGGAATCTGCacctatccttttttttttttttttttttttttacaaatgataGATTTCCAAAGACTTTTGTGATGGAAACATAAAGCTACTTTGTTTACAGGTTGTCATGGAAAATCTTTAGACATTTGTTTCCATAACTTACCTTGTCCCTCGTCCAACAGTGGGAAGACCAGACAGCCAGTGTTGCCAACAAAGTCATTTTTGATGCACtgtactttattttaaaaatattttctaatTCAATAATTTCATCCTTGAgcgtgttgtttgtgttgtagcttttcaTACATCTTCGTGATCTCACACCTTAGTAGCTCTTTCTCTCAATAGactatttaatttaaattcaatGATTTATTTATACCGTCACAGACAGTACATAACATGAAATCAGATGATTCAATTTAAGAATGTAATTTATCGTTTGTTGTTTGTCCAATGACTGTTTCTTCTCACTTTTTGcctcttttctattttttgtacagttttttttaatgtttcaaaatTTTTGGAGGATGTTGACAACAGTTAAAACAGCGTTAGAGATACAATTGAAACAAATTCAATATTTTCATGCTGAAAAAGAAATTCCAAGGGGAAAAGTCACATGTTTCTGTATAAATATTGGTGCTTTGTTGAATAAAGTTTTCTCTTTTCATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300182 lncRNA downstream 357157 22337075 ~ 22339870 (-) True G221857
XR_005638025.1 lncRNA downstream 361543 22325273 ~ 22335484 (-) True LOC120552529
TU300161 lncRNA downstream 388793 22307488 ~ 22308234 (-) True G221844
TU300160 lncRNA downstream 395812 22300418 ~ 22301215 (-) True G221843
TU300154 lncRNA downstream 397452 22243807 ~ 22299575 (-) True G221837
TU300267 lncRNA upstream 157617 22959366 ~ 22960660 (-) True G221926
TU300269 lncRNA upstream 180215 22981964 ~ 22982351 (-) True G221928
TU300274 lncRNA upstream 238100 23039849 ~ 23040134 (-) True G221933
XR_005638061.1 lncRNA upstream 269205 23070954 ~ 23071831 (-) False LOC120552653
XR_005638060.1 lncRNA upstream 269205 23070954 ~ 23071535 (-) True LOC120552653
XM_039789867.1 mRNA downstream 163 22691030 ~ 22696864 (-) True ggh
XM_039789868.1 mRNA downstream 8625 22679691 ~ 22688402 (-) True LOC120552124
XM_039789869.1 mRNA downstream 8628 22679691 ~ 22688399 (-) False LOC120552124
XM_039789870.1 mRNA downstream 8630 22679691 ~ 22688397 (-) False LOC120552124
XM_039789871.1 mRNA downstream 8631 22679691 ~ 22688396 (-) False LOC120552124
XM_039790272.1 mRNA upstream 39278 22841027 ~ 22888231 (-) False LOC120552328
XM_039790271.1 mRNA upstream 39278 22841027 ~ 22882297 (-) True LOC120552328
XM_039790941.1 mRNA upstream 110813 22912562 ~ 22921256 (-) True LOC120552717
XM_039790942.1 mRNA upstream 266971 23068720 ~ 23070897 (-) True LOC120552718
XM_039790844.1 mRNA upstream 326895 23128644 ~ 23308035 (-) False LOC120552656
TU300141 other downstream 478661 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 479478 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 687939 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 1834362 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 3370133 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 2161696 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 2254844 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 2754724 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 2929007 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 3026342 25828091 ~ 25834224 (-) False mynn

Expression Profile