RNA id: XM_039790678.1


Basic Information

Item Value
RNA id XM_039790678.1
length 8749
RNA type mRNA
GC content 0.50
exon number 15
gene id arhgef4
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 3714311 ~ 3873302 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcagcagcagcagccgcagccGCAGCAACCATCACCGTCAAGTGtgtagggggtggggggggggagagaagtTGACAATCGAGCCGACAGTATGGGAGACGTTCCGCAAAGTACCAGACAGTGCTCCGACACAAGCCCGACAAACTTTTAGGTGAACAGTGAACTTTTCCCTGAGCCGCATATAACCTTCCAGCAGTGGGGAACGTTAATGGATAACCCTGGTAGTAGCGGAGATTCGGCCGCGGAGAGCAGCGGGTCTGCCCGCAGAGAGGAGTCCAGCAGCGGGTTCGGAGCGCAGTCGGAGCTGCCGGTGTATCTTACCTATCTACCGGAGTCCTACTGCACCGCCAAGTTCAGCCTGGCGGCTTACCTTCTCTGCTGGGCTCTGCTCAGATGGTACCAGAAACTCCGATGCCAGTCTGCTCCTCTACAACCCCAGGAAGCCCTTGAACATCCCTCCCACCTCTGTGAAGGATTAGGCTTAGAGGAGGGGGATTTGGGTGCTGACTCCCTGGAATGGCGTGAGAGAGGCACCGGAGGGGGGGACACATCTGATGACTATTTTGACTCCCGCTCTTGGCACCGGGACACCCTGTCAGATTTTGGTCTGGACAGGGAGGACTCTCTGGATGCCCTGCTGGGACTAGACGGCGCCTACCTTGGTCGGCGAACAACCGGCAGCACTTTCTGCACTGGGCAGAGAAAAGCCCGACGTAGAGAGTCAGTGACAGCCAAGGACGACCACAGAGACACCACAGAGACTTATGTTGGACGATTTGGATGtagcaggaggaggaaaagcCCAGAGAACCATGTGGACCCTAATATTCCCTCAAAGCTCAGCACTAGAGACCTGCGCGTAGTTCAGATTCGACCCCATCCAAGTACAGAGGAACTAAAACGGGACTCGCGCCAAGAACAGTCCGGTTTACAGGACGTTTGCACAGAAACTCAAGTCAAGGGCAGCACGGAGCCATACAGTTTACATGTACAAAGccaacacaacacagacacctTTGACAAGAAGGTAAATTGTCCACCAGACACTCAGGAAGTGACGTTGCATGCACAACCTGCAGAAAGCAACGCCAGCAGACTGAATGAATCTACAGACTCAGAAACATGCGGTATACATGTAGATACcacagaggaaaaaaagctACAACAGCGAATCACATGTGAACATAACACAAGGTTACAGACAGGGAACACAGATAGAGAAAAtgaagagaagacagacagagtaaGAATAGAACTCTGTAATGTTCAGGATGTAGAAGCAAAGAATGTTGAACATCTCAGCACTTACTCTCTAGAGTTTAACCCAAGTTTAAATAGATGCAATGGAGACCGTAATGAAAGAcatcacagacagagagaaaatttAGAACACCAGGATATAATCTATGAAGACAAAGACATACAGGCTCTAAAAGTGCACAAGGACAGAAGGGACTTGTGCAAGAGTGTTGGGACATATTGTAATAGATCACATCACACAATAGAGACTCATTATAAAGACGACCCACGCATAGCTAATACACATTTTACTGATCTGATAAGTGCACAAACAGCTGACGCTACTCGTACACCAACGCCCTCTGAATctgagacaaaacacacagactctcAGTTAATTACAGACATTTTTGTAGCAGGTCCAAACATCACAGAAGCACATGGCGCAAAGACAAATAGCATACCACATCACCCAAAGTCAGCTAAGCTCAGAGACACACTCGATACGGTCAATATATTGGCACACAAGGTGGATATTTGCTGTTCCCAAACTCTGTGTGAAGCGAGCTCCAACAAAGGACCGTCAGAGATCCACCCTCAGGTTTGTACAATTGAGACAAAGCCCCAGGATAAGGCAGGGGTGTCGGGTGTCTGCTTCCAGACGGAGCAGTTTGGGTGTGTTGGTACTACAACAGAGGGGACCACACCACCTGGGAGAGTAAATGAAATATGTTCCTCCATCACGTTTTCCACAGAGACCGCATCCTCTTTTCTATTAGATACCTGTTCCACTGTTCCGAAGGTTTCTACACTAGCCTCACCTGTCCCGTTGGCAGACTCGGACAGGGCGGAGCTCGCTGAGAGGCAACCAGATCAAAAGCAGCCACAAAGCACAAGGTTACAAACATGGCAAGTTCCAGGTCAAACCCAGGGTTTAATCCCTAATCACTTGGATCAGGGGGGTGCTACCGTAGAAATACTCAGTCATAGGCAGTTCCATTCTGTGGACAAGCTTTCAGAGAGGGCACAGTCAGGCTCTGTAGGACCAGGACCTGACTCAACTCAAATCCAATCTGACACTGGTAAGGATTCTGGGAACCGTTTGCCTCATCGCCAATTCTCAAATAATCTGCTGCTTGTTTCTGTCAACCAAGGAGCAGAGGATACCTCCCCTCTGTTATCAGAGAACtttggaggagagaggaggagggaaggatcACCCTGCTCTCTTCTCCGGAAAAAACAGGAACAGGAGGTGGAGGGCAGTCGTGTTTATCATCAACAGGAAGAAATTGTGGAAGCAGTAAGCAAAGTCAATGTCTTACAGTCACAACATGGCACAACAAAGCTTTCTGAGCACATAGAGCTGGGAGTAGTTCCAAAAGAAATTGCCAGTGATCCAGATGCCTACTTTACTCAGCATGTGCCTAGTAGGATAGGATTAACATCCCactctcctgctgctgctgagtcCATTCAGGACAGTAGCAGAGAACACCCAGGCATAGCTCAAAGGGCCATTTCTCTGACAAACGTACAATCTGCTGTCAGCGCAATTCCTAGTAATTGTAAGCAAGTTCAGCTGGTCCTAAAGATCCCTGAGCCTCCATGTAGCCTGAACGCCCCTTTTTCTCTGCTCTCAGACTCCAACAATAACACCAAGGCCAGTATAAACGGGGTGGGAAGAGGGGAGGGTTTAGGGTGTTTCTCACAGGAAGCCCGGAGCAACTACGAACGGAATGAGAGTATTGTTTGTCCTGTGTTTGAACCATCAACAaatgtgacctctgaccccttGGAAGATGTAGACAAGCCCCAGGAAGATTCCGAGTTGTTCCTGTCTTCACTGGACCAGGGAGCCAACTGCAGCAGTGAGGAAACTGAACATGTGCTAGGGGAAAACAGCCATTTAAGCCTTGCTCATGCAGACGAGCTAGAAGAACTGAAGACAGAGAAAATTATTGAGGATGAAACTGTCGTAAGTCTAAGGTTCAACTGCTCTGACCTAGAAAGAAACGAATGCCTTCAATCTTTAGTGTCACGTTCAGAGAGCAGAGGCCTATTGATGGACAGTGCATTTAAAGCGAGAGAAGGTCACTATTGTAGCCGACCAGAGGATCACAGCTTACCTAACAGAAGAAGAGGCAACTTATCCAAATTATGTGAGGAATATACACTGGCTGAAGAGTGTAGAGACCCCACGCAGGTCAGATTGATAGCTCCACAGCAGGAGGTGAGGGTAGTAAGGTACTCGCACCCTGATGTTAGCCTCAACCTGCTTGCTGTCAGTAGTTTAGAGCCAATTTTGGAGACTGAGCGTTCACTGGAAAATTATGGCACAACAGAGGATGATTTAAAAATTGAAGCAAAGCTAGAATATGAGGTCATGAGGCCTGTTGAGGACGTCGGGGGGGATATTGCTAACCTTTCAGGGGACATCTCCAGCCCCAAGAGTCCACACCACCAGCCTGAACAGGAAGAAGAATCTCTGACAACTGCTGAGTTAGAACCTGAGGTCAACCCAGCAACACCTGTTCTATGTGGTAGTGACGAAAAGCACTCTAGACCTATGACTGTTGCCTATGATGCTGTTTCTTACACCTCAGCTAGCAGCAACTGCGATGAGTTGGACGATCCTCACTTTGATAGTTCTGCCAGAAATGCCAAGCCTGACAAAATGACCAAGAGAAGCAAAACAAAAGGCACCCAGACTGGAAATAAAGGCTCTAAGTTTTCTGTCTTTGCTAAAATGCCTTCTTTTAGGAAGGCTAAGGGCTCAAAGGGTTCCAAAAGTGAGGAGTGCCCCCAGGAATCATCAGATGGGGCAGGTGAGGGCCTTCTGTCTGGGGAAGGGCCACAGAGGGACAACTCAGACGATGAGGTTTTTGTCAAAGGTGACATCCTGAACCAAACCGTTCACCAAGCGTTGTCCTCATTGCATTGCGAGGTAGAAGAAGAGGACTGTGGCTTTTACCCCTCGACTCCCGACACTTGCCATGTCCATCAGCTAGTCAGCCAAGGGAGTAGTGGGGAGGGTAACGGGGGACCCAGCCCAGACAACCCCCTACTCAGGCAAGTCCAGTCACCTAATGGGCAGACCTACAAGAGGAGCAAGAGCAACGACAGTTTAAACATCCGCATGCGCTTTGCACAAGCACACAAGTCCATTTCCAGCCTGTTTGAGTCCCGGTCAATGGATAAGGAGAATGAGGAGCAGGCCACTGTGGGCATTAATGTGGATTCTGCTGCAGCCAAACAATCCTGGAGGAAGCTAAAAAGGGCTAAGGAGGCTGAGCTGCTGAAAAGAACTCATTCATTGCCAGATGAGGAATGTAGCAACACAGTTTCTGGCCGGGGCTGTGGAGACTTAACGTCCTCTCCACCGCTGGACAGGCTCAGCAGTCCAGGGTCACCATCCTCCCGCAGAGCCCTTCGCCACACTGATCCCATCACCAAGCGTGGAGTTCCACAAGGGAGTGGAAAGGAAAACCCCCATGGGTGTAAATCCGAGGGCCAGAGAAGAAAATGTTCACCAAACGGTGTACCTaccacactgtgtgtgtctggcctACCTCCATTTTTAGACTCTGCAGTCCCACAGCCCAATCGCACCAGTCCTGTTTCACCTTTAAGTTCCTGCTCAGTAGCCACCCTTACTCATCAGCTTTCGCCGTCCTGCACCAGGTCTCACCCAGTGGCCAGCGAGGGTTTGACTAAGAGCCCCCTACGGCCAATGAGCCCTAAACCTAACAGTCCTAGGCCAGCGGCCCAGCGTAAAATCTTTTGCTACCCTCACTCAGCAAGGACCGGTACTGTCTGCCCTATCCTTCTGGGCCAGTCGGCCAGCGTGGAGGGATTAACGGACCCCCCCGAGAGACCTAAGACCCTGAAACCCTCAGCTAGCCCTCTGGGTCTCAGCCTCAGCCCTCTGGATGCAGCCGAAGGCAGAATAGACAGCCAGTCACACATCAGCCTGTATGCCATTGGCTCTATCAACGAATTAGAGGGTACACAGACAGAGGGCCGACCCGCCAGCCAGTCCAGAACAAGAAGGCTGTTGGGGGTGAAGTGCGAGGGGAAGGCCGCTGTGGTTCTCACTGGGCTGAGGACTGGCTGCTGGGTGGACGCGGGCTGCGATGGATGTGGCCAGCAGCGAAGGCCAAAGTTTTCAGATGACCTCTGGATTGAagagcaaaagaaaaacaaacgcAAACTGGCCCGAGCCATCAGGGGGAGCCTGGGCCAACTCAACACACCGTTATCTGAAGACATGGATAAAACTGACGCGGGAGTCACTTTGGGGCCCATTGAAGCCTTCCGGGGGATGCCCCTCAAATCCCACTGCTTTTCTCAGAGCACCCCCATCGGTCTTGACTGCCTGGGCTGGAGAAGACACATCTACTGCTCGGTGGTTGTTCCTGACGAGGCGTCAGAGAAGGCGGGGCTTGGAGACGAGCTGGGCAGCGAAGAGGATCTGCTGTATGAAGAGTTTCGCAGTTCTGGACATCGTTTTGGACACCCGGGAGGAGGCGGAGGAGAGCAGCTAGCCATCAATGAGCTGATCAGTGATGGCAGCGTGGTGTACGCCGAGGCCCTCTGGGACCATGTCACCATGGATGACCAGGAGCTGGGCTTCAAGGCCGGTGATGTCATCGAGGTAGTGGACGCCACCAACAAGGAGTGGTGGTGGGGTCGCATCATGGACAGCGAGGGCTGGTTCCCCGCCAGCTTCGTACGGTTGCGTGTGAACCAGGATGAGCCCATGGAGGAGTATCTGGCCCACCTGGAGGGGGCTCAGGCTGGAGAGGAGAGCCGGGCAGGTCTGGGCTTGTTGCTGGGACCTGGTTTGCCCTGCAAAGAACAGATGAGGACCAATGTCATCAATGAGATCATgagcacagagagagactaCATCAAGCACCTAAAAGACATCTGTGAGGGTTACATCAAACAGTGCCGCAAGCGGACAGACATGTTTGCGGAAGAGCAGCTTCGCACCATCTTCGGAAATATTGAAGATATCTACCGATTCCAGAGGAAGTTCCTGAAAGACCTGGAGAAGAAATTCAACAAGGAGCAGCCGCACCTCAGCGAGATCGGTTGCTGCTTCCTCGAACACCAAACAGATTTCCAGATCTACTCCGAGTATTGCAACAACCACCCCAACGCCTGCGTCCAGCTCTCTAAGCTCATGAAGGTCAACAAATATGTGTTCTTCTTCGAGGCCTGCCGACTCCTGCAGAAGATGATCGACATTTCCTTGGATGGCTTCCTGCTCACTCCCGTGCAGAAGATCTGCAAGTACCCGCTGCAGCTAGCTGAGCTGCTCAAATACACCAACCCACAGCACAGGGACTACAAAGATGTGGAGGCGGCCTTAAACGCCATGAAGAACGTAGCCAGGCTGATCAACGAGAGGAAACGACGCCTTGAGAACATCGACAAGATCGCCCAGTGGCAGAGCTCCATAGAGGACTGGGAGGGAGAAGACGTCCTCAGCAGGAGCTCTGATCTCATCTTTTCGGGGGAGTTGAGCAAGCTGTCCCAGCCTCAGGCCAAGAGTCAGCAGAGAATGTTTTTCCTCTTTGATCATCAGATGGTGTACTGCAAAAAGGACCTCCTGCGGCGGGACATGCTGTACTACAAGGGTCGGATGGACATGGACCACATGGAGGTGATAGACGTGGAGGACGGTAAGGAGAAGGACTTCAACATCAGCGTGAAGAACGCCCTGAAGCTGCGCTCGCTGGCCGGGGACCAAGTCCACCTGCTGTGTGCCAAGAAGCCGGAGCAGAAACAGCGCTGGCTCGGAGCCTTCGCTGACGAGAGGATTCAGGTCCAGCATGACCGCGACACAGgGTTCTCTCTCACAGAGGTCCAGAAGAAACAGGCCATGTTTAACGCCTGCAAAAGCCATCCAGCTGGGAAACCAAAAGTGACCAGACCTTACTACGACTTCCTCCTGCGACAGAAACACCCGTCCCTCCCCACCGCCTTGCCCCAGCAGCAGGTGTTCATGCTGGCTGAGCCCAAGCGCAAAACCTCCACCTTCTGGCACAACATCGGCCGACTGACACCTTTCAAGAAGTGAAGGAGAGAAAATCctgaagtgaaagaaaaagcCGTGGAGCGAAGGaacagaggggagggggggggacagagaaagagaagcgCTCTCTGCTCGTGCCTGAATAGACCCTTTTTAATtaatctctttttcttttcctacaTGTAACATTGCCCTTATTGAAACACTGATTTATTGCATAGATGAGGATGATTATGATGAGGAcgagataattttttcgaaagCACTTTATAGGTTGGTTAACAATCAGACCTGAGAACGGTCTCCCCCGGAGACACTGAGTCAAACAGGGCGAGTGGACTCTTGCTTAActtactgctactgctactacacCTCCAATCAAGCGCCAACTGGTACTAATACTACTGCTGTACTGCTGCGAGCGAGCGTGGGACTCCAGATTGTGCCGCCTCTGtgaacgacaaaaaaaaaaaataataagttgTGTCACTTCTTTCCactgttgtgttgttttatgATTTCACAGATGCCAAGTGTTCACAGTGCCagacaattttgtttttttttacatctgtttgatctgtgtctgtttatgaaaaagaaaaaagaaaaaggggaacattgaaaggggggtggggggttccTGTGCTTTTTCTCTGTGCAAATATATAATTTCAGGATTTTATTTGAGCTGGGGTTTTCTTAAGTGTTTTGTGATCTCCATCCGCCAGGATTTAGTTCCGTATTGTGgaaacacttaaataattcatcaaatgcaagaagaagaagaagaagaagaagattctACTCAGCGCAGATTAGGAGCTTTTTATTCAAgcaaaacagcagcaacaaacaTTCCTCGAGTCCGATCCTCGACTCTTCCTTTTACCTACCATGTCAATGAGAGTAAACACCctgttcttttttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttcttttttttaaagtgccattTGAAGTGTGTCGCGGATGACTTACAATGACATGCATGGATGTGATGAAAAAATGCTGTGaagaatatttttttatctctgaAGAACCCTGCTATATTTAACCAGACTTCAGGAACTGAGGTTTTCATCGTGCTACTAGGCTGACAgcaacgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacttttatctACCTTTACTGTACTTCTGATAGCCAGTGTTCCTGCTCTGTGTATCTGGTCTCCAGTATAATCTCCTTTCTGATCGATGCAGCCCAGTGATATCGCTCTGTAAGTGCATTCAGTGAAATGTGCTCCTTTCACCTTTGTGTTGAAATGTTTTAGCTTCTGACGATATGGAATATTAAACATTCCTAAGCTGACAAATGTGACCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638028.1 lncRNA upstream 5592 3705024 ~ 3708719 (+) True LOC120552544
TU294759 lncRNA upstream 47818 3664861 ~ 3666493 (+) True G217769
TU294758 lncRNA upstream 49548 3664357 ~ 3664763 (+) True G217768
TU294755 lncRNA upstream 53997 3658336 ~ 3660314 (+) True G217765
TU294751 lncRNA upstream 67816 3646243 ~ 3646495 (+) True G217761
TU294797 lncRNA downstream 67494 3940796 ~ 3941325 (+) True G217795
TU294946 lncRNA downstream 382774 4256076 ~ 4261598 (+) False ppp1r17
TU294972 lncRNA downstream 529747 4403049 ~ 4403369 (+) True G217925
TU294974 lncRNA downstream 563121 4436423 ~ 4436735 (+) True G217927
TU294993 lncRNA downstream 649083 4522385 ~ 4522706 (+) False trdmt1
XM_039789982.1 mRNA upstream 9936 3670420 ~ 3704375 (+) False chchd7
XM_039789983.1 mRNA upstream 9936 3670954 ~ 3704375 (+) False chchd7
XM_039789981.1 mRNA upstream 9936 3692912 ~ 3704375 (+) True chchd7
XM_039790528.1 mRNA upstream 76278 3570272 ~ 3638033 (+) True steap2
XM_039790529.1 mRNA upstream 76278 3570272 ~ 3638033 (+) False steap2
XM_039790687.1 mRNA downstream 27649 3900951 ~ 3935126 (+) True LOC120552545
XM_039789732.1 mRNA downstream 348607 4221909 ~ 4250306 (+) True LOC120552069
XM_039789754.1 mRNA downstream 382746 4256048 ~ 4261574 (+) True ppp1r17
XM_039789752.1 mRNA downstream 440049 4313351 ~ 4323124 (+) True LOC120552080
XM_039789738.1 mRNA downstream 638411 4511713 ~ 4522449 (+) True trdmt1
TU294764 other upstream 9968 3692962 ~ 3704343 (+) False chchd7
TU294709 other upstream 199372 3495450 ~ 3514939 (+) False G217723
TU294600 other upstream 481075 3229363 ~ 3233236 (+) False LOC120552392
unassigned_transcript_1298 other upstream 505633 3208597 ~ 3208678 (+) True trnas-aga_19
unassigned_transcript_1297 other upstream 508675 3205555 ~ 3205636 (+) True trnas-aga_18
unassigned_transcript_1352 other downstream 190692 4063994 ~ 4064075 (+) True trnas-gcu_20
unassigned_transcript_1353 other downstream 520202 4393504 ~ 4393576 (+) True trnaa-cgc_15
unassigned_transcript_1357 other downstream 537578 4410880 ~ 4410962 (+) True trnas-gcu_24
unassigned_transcript_1358 other downstream 539248 4412550 ~ 4412631 (+) True trnas-gcu_25
unassigned_transcript_1359 other downstream 541620 4414922 ~ 4415003 (+) True trnas-gcu_26

Expression Profile