RNA id: XM_039790687.1


Basic Information

Item Value
RNA id XM_039790687.1
length 2834
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC120552545
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 3900951 ~ 3935126 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTCATCAGAAGCCCCGCCCTCTGAGGGCCAACACAACTTTCTGCACTCAGGgtgaagacagagacacaggcagcaccgggtGGAGGCCATTCAACAGGAGTGACAAAATAGACCTGAATGACAACACCATGAGCCCATCATACAAGTCTCTCCCCCAGCACCAAGCTTCTTAGAAGCCCTCCAGAGAGTTCAGGCATCGGCAATGTGGCATTCGTACTTTCTGTTGGCAGTGCTGAGTGCAGGGACTGTAGAACCAGTCACAGCGTACAGTAATGGGAAGGTAAGTGTTGCCTGTAAAGACATGGTGCCTCAGCATGGTTACGATCCCAGCCTAGACCCTCCTCCGTACAGCATCACTGTGGACACATCCACATTCAGTCCAAGCGACAACGTCACAGTGTCTTTACAAGTTGCCTCCTCCAACACGACATTCTTCAAGGGGTTCCTGATAGAAGCTCGGGATGCTGGGAAATTGGAGTCCCCAGCAGTGGGTTTCTTCATCCTGACTGACCCCGCTGAGTCCCAGCTACTACAGTGTGGCCTCAATAAGGGATCTGGGGTGAGCCATGAGAATGCGAGAAAGACTCATGTTCAGGCTGTGTGGGAACCTCCAAATAACCCTCCACAAAGAGTCCAGTTTCTTGTGACAGTGGTGCAAAAGTATAAGGTGTACTGGGTGAAGATTGCAGGTCCTGTGGTGTCTTTTAGAGGAGCGACTGCTGTTCCATCAACTGCTGTTTCTGGTCAAACTACCAGCCCCACTGCTCTGTCCACACCGttTAGTTCAGCGGGGTGTGGCCACAGTAAATCTTGCCTCAGAGACCCAGTGGGCTGCCACCCAGAGTCAGACCCCCGCTGTTTCTTCCTGTCCTTTGCGAGTGATCAAGAAGGATCAGGTGTGATGTTCGAACTCAGTGGGCCTGCTGAAGGTTACCTGTCCTTTGCCCTGTCTCTGGACAAATGGATGGGGAATGATGACGTCTATCTGTGCGTGAATGATGGAGGCAGAGTTACCATCAGTGCGGCTTATGTCTCAGGCCGAACACCCCCTGAGCTGATTACAGAGGAGGACCTGTGGGGTCGGGCGTGGAGGTTGGCTGATGGGGTCATCCAATGTCGTTTCCAAAGAAACATCCTCGTCCCTCAGGGGGGGAACCGGTTTAACTTAAACCAGAGCTACTTCCTGTTTCTTACACATGGTATATCTCACCAGGGTGTAATCCACAGACACCAACGGCAACCTCtgatctccaccaatcagaaggCGATCACCGGATATCCGGAGGATCTGGTTGGCTCCCGCTCCCCCCTGCTGCTCAAGTTCCATGGTGTGTTAATGCTGACTGTCTGGATGTGGACAGTGAGCACAGCCATCATCATTGCTCGCCACTACAAAGACTGCTGGCCTGACACAACTCTGCTGGGACAAAAGCTGTGGTTCCAGCTCCATCGAACCATGGCGGTGTTGGCTGTGGTCCTAACGGCTGTGGCCTTCACCCTGCCTTTCATATACAGGATGGGATGGAGCAAGCATGCAGCCTCTCATCCTTACATCGGTTGCACCGTCATGGCTCTGTCTGTCATCCAGCTAATTGTGGGATTTCTCAGGCCAGCCCCGGAGTCCCCCAGGAGGAGGATCTTCAACTGGGTGCACTTGGTAACTGGCACTGCTGGCCAGATACTCGCTGtGGGGTGTGTGTTCCTGGGTGTTGCCCAGCAGACGCTGCCGTTACCCAGCCCCTGGTCTTCTGCAGTGCTGACTGGATGGCTGCTGTGGATCGTGCTGGCAGACCTGCTGCTCCAAAACCATTCCTACAGACTGCGGAGTAGAGGAAACCACAACGGTGACGACAAAGAGAGCCTTTTGTTTGCTCAGTTGGAGATGCAGCAGCATAGAGAGGGATCTAAAGTCAAGAAGATGGTGCTAGTGGTGTTCGTAATGGGAAACACAGGGTTCCTGGCTGCATTTATAAACACTATTGCAAATGTATGATTAACTACGATAATGTCTTGTAAAATGTATCTACAGTTTATATTTCTGTTATTAAAGGACACTTTTCTTTCACtgctaatataataataacaaatagaAAATTTCAGAAGTAATtactactttttttctttttttatctctggTGTATCATACTATAATGTTTAATGTCTTGTACCAATATTCCAATCTGTTCTTAAACTAGTTAACCTATATTTCTGTTACATTAGCCCAGTTaaccccttgtgttgtcttcgggtcaaatttgacccgttttctaaATGtgtatatcagaaatatgggtttctttttaacgaCCTCATTTtgattacccaaaaataacatggacgGATGAATCCACACAACACGCTTCAAAAGTACAACAGAAGATCGGCTctctacttttattgaatttggggtgttttgtaaaattttttagcatttgaaaaagaaattgaaatgtttcgaaacagtatcctgactgaacgttgacccttctgtgattgtccttcctttaatattagtctaaataattcatcacgaaacttgggtcttatttttctagttttgtCCATCGTTCTTATCAATAATAACTccgagatttttttttacactttgaaAAGAAGTTCAACAGGGTAGGAACCAATAAATCAGCCAACTTGTACTGTATTCAGTAAACACAGGTGAAGAGGAAAGTTATTACCAAAGCTGTCGTAAGCACCTATCACAGTTTACAGCCGCTCAGCTGAATGTGGAAAAATGTCCAAATTGTCTATGCAAACATATGATTCAACATATATGAAGGACAAAGTTcccaataataaataaatgatgaacATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294787 lncRNA upstream 73893 3826556 ~ 3827058 (+) True G217788
XR_005638028.1 lncRNA upstream 192232 3705024 ~ 3708719 (+) True LOC120552544
TU294759 lncRNA upstream 234458 3664861 ~ 3666493 (+) True G217769
TU294758 lncRNA upstream 236188 3664357 ~ 3664763 (+) True G217768
TU294755 lncRNA upstream 240637 3658336 ~ 3660314 (+) True G217765
TU294797 lncRNA downstream 5670 3940796 ~ 3941325 (+) True G217795
TU294946 lncRNA downstream 320950 4256076 ~ 4261598 (+) False ppp1r17
TU294972 lncRNA downstream 467923 4403049 ~ 4403369 (+) True G217925
TU294974 lncRNA downstream 501297 4436423 ~ 4436735 (+) True G217927
TU294993 lncRNA downstream 587259 4522385 ~ 4522706 (+) False trdmt1
XM_039790678.1 mRNA upstream 27649 3714311 ~ 3873302 (+) False arhgef4
XM_039790677.1 mRNA upstream 27649 3714312 ~ 3873302 (+) True arhgef4
XM_039790682.1 mRNA upstream 27649 3714313 ~ 3873302 (+) False arhgef4
XM_039790684.1 mRNA upstream 27649 3714336 ~ 3873302 (+) False arhgef4
XM_039790681.1 mRNA upstream 27649 3761577 ~ 3873302 (+) False arhgef4
XM_039789732.1 mRNA downstream 286783 4221909 ~ 4250306 (+) True LOC120552069
XM_039789754.1 mRNA downstream 320922 4256048 ~ 4261574 (+) True ppp1r17
XM_039789752.1 mRNA downstream 378225 4313351 ~ 4323124 (+) True LOC120552080
XM_039789738.1 mRNA downstream 576587 4511713 ~ 4522449 (+) True trdmt1
XM_039789743.1 mRNA downstream 683513 4618639 ~ 4742964 (+) False plppr5b
TU294764 other upstream 196608 3692962 ~ 3704343 (+) False chchd7
TU294709 other upstream 386012 3495450 ~ 3514939 (+) False G217723
TU294600 other upstream 667715 3229363 ~ 3233236 (+) False LOC120552392
unassigned_transcript_1298 other upstream 692273 3208597 ~ 3208678 (+) True trnas-aga_19
unassigned_transcript_1297 other upstream 695315 3205555 ~ 3205636 (+) True trnas-aga_18
unassigned_transcript_1352 other downstream 128868 4063994 ~ 4064075 (+) True trnas-gcu_20
unassigned_transcript_1353 other downstream 458378 4393504 ~ 4393576 (+) True trnaa-cgc_15
unassigned_transcript_1357 other downstream 475754 4410880 ~ 4410962 (+) True trnas-gcu_24
unassigned_transcript_1358 other downstream 477424 4412550 ~ 4412631 (+) True trnas-gcu_25
unassigned_transcript_1359 other downstream 479796 4414922 ~ 4415003 (+) True trnas-gcu_26

Expression Profile