RNA id: XM_039790696.1


Basic Information

Item Value
RNA id XM_039790696.1
length 1523
RNA type mRNA
GC content 0.54
exon number 11
gene id cpb1
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 16979924 ~ 16987685 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGCTGCATTACAGACGAGGATTGGTAGATGGGCAGCAGGTCGGGGTTATAAGAGCTGTCAAACGGTGAGTTcagcttcacagacaacatgAGGGCCCTCCTGCTTCTCGGATTGGTGGCTGTTGCCCTGGCTGAATTCACTCACTTCGAAGGAGAGAAAGTCTTCCGTCTGAAGCCTGTACTTGATGAGCATGTGACCCTCATTAAGGACCTGGCTAAGAGCATCGAGGTTGACTTCTGGAGACCCGAGAGCCCTGAGCTGGTGACCATCGACATCGATGTGGACATCCGTGTGCCTGCCATGTACCTGGATATGGTGTACACCACCCTGCAGCAGAATGATATGGAGTACAGGGTCCTCATTGAGGATGTGCAGTCTTCTGTTGATGCTCAGGTTGATAACAAGCCCTCTCCCAGAGCCCACAGCTACACCAAGTACAACACCTGGGATACTGTCCAGTCCTGGATTGCCTCCATTTCCTCCTCCAATCCTAATCTGATTAGCAAGCAGGTGATTGGAAGCACCTACGAGGGACGCCCCATGACTGTTCTCAAGCTCGGTAAGAAGTCCAGCTCCACCAAGCCTGCTATCTTCATGGATTGTGGTATTCACGCTAGAGAGTGGATCTCTCCTGCTTTCTGCCAGTGGTTCGTCAAGGAGGCTCTGTCCACCTATGGCAGTGATTCTCAGATGACCAGCCTGCTCGACCAGATGGATGTATTTGTTCTGCCTGTCTTTAACATTGATGGCTACGACTACACCCACAAGAGCAACAGGATGTGGAGGAAGACTCGCTCCAGGAAATCTGGATCCAGCTGCATTGGTGCCGATCCCAACAGGAACTGGAACGCTGGCTGGTGCACCACTGGGGCCTCCAGCAACCCCTGCAGCGACACCTTCTGTGGGTACAGTCCTGAGTCTGAGATCGAGGTCAAGAACGTTGCCGACTTCATCCGCAGGAACAAGTCCGTCCTCAAGGCCTACCTAACCATCCACTCCTACTCCCAGCTGCTGCTCTTCCCCTATTCCTACACCTTTGAGCTGGCTGCACACCACAGTGAGCTGCTGAAGGTTGCTGAGGGAGCTTCTGCTGCTCTGCGTAGTCTGTATGGTACCAGCTACACCAGTGGACCCGGTGCTGCAACCATCTACCCCGCTGCTGGAGGCTCTGACGACTGGGCCTACGACCTGGGAGTAAAGTATTCCTACACCTTTGAGTTGCGTGACACTGGTCGTTATGGCTTCCTGCTGCCCGAGTCTCAGATCAAGCCCACATGCGAGGAGACCATGCTGGCCGTCAAGTACATCGCCGCCTACGTGCAGAAGAACCTCTATTAAAGAGCGGAACTGCCAGGACCCCTGCCAACTCAGCTCCTCTACACCAGCCCCCAGCCCCTCCAACCTCTCAGCCATCTCCAGCCTGTATCCATGGATACAGGCACCACCCGCCATGTTTCCTCGCTGTGCTTGACAGAATGTCAAGATGAGTGCAAACAATAAAATCAATGATCCATCCCCACA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01291 CPB1; carboxypeptidase B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298291 lncRNA downstream 81387 16898189 ~ 16898537 (-) True G220445
TU298288 lncRNA downstream 91900 16887256 ~ 16888024 (-) True G220443
TU298209 lncRNA downstream 234512 16742287 ~ 16745412 (-) True G220382
TU298198 lncRNA downstream 278367 16694587 ~ 16701557 (-) True G220373
TU298100 lncRNA downstream 431200 16546928 ~ 16548724 (-) True G220300
XR_005637942.1 lncRNA upstream 127545 17115230 ~ 17398235 (-) False LOC120551964
XR_005637940.1 lncRNA upstream 153382 17141067 ~ 17398233 (-) True LOC120551964
TU298327 lncRNA upstream 153417 17141102 ~ 17398220 (-) False LOC120551964
TU298337 lncRNA upstream 210706 17198391 ~ 17201334 (-) True G220488
XR_005637941.1 lncRNA upstream 386031 17373716 ~ 17398234 (-) False LOC120551964
XM_039790517.1 mRNA downstream 2243 16966645 ~ 16977681 (-) True gyg1b
XM_039790518.1 mRNA downstream 2243 16966651 ~ 16977681 (-) False gyg1b
XM_039790094.1 mRNA downstream 14185 16950655 ~ 16965739 (-) True bdh1
XM_039790405.1 mRNA downstream 98200 16879495 ~ 16881724 (-) True LOC120552381
XM_039790039.1 mRNA downstream 184800 16782072 ~ 16795124 (-) False LOC120552205
XM_039790698.1 mRNA upstream 124 16987809 ~ 16994577 (-) True agtr1b
XM_039790697.1 mRNA upstream 124 16987809 ~ 16994576 (-) False agtr1b
XM_039789561.1 mRNA upstream 108566 17096251 ~ 17099679 (-) True zic1
XM_039789562.1 mRNA upstream 108566 17096251 ~ 17099678 (-) False zic1
XM_039790403.1 mRNA upstream 430944 17418629 ~ 17446009 (-) True dipk2ab
TU298248 other downstream 104624 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 184800 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 695189 16266303 ~ 16284735 (-) False drd3
XR_005638012.1 other downstream 695192 16266303 ~ 16284732 (-) False drd3
TU297865 other downstream 914703 16064670 ~ 16065221 (-) True G220124
TU298817 other upstream 1622551 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other upstream 1637041 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298948 other upstream 1951314 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 2327906 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 3848612 20836297 ~ 20862665 (-) False LOC120552536

Expression Profile