RNA id: XM_039790716.1


Basic Information

Item Value
RNA id XM_039790716.1
length 2537
RNA type mRNA
GC content 0.50
exon number 21
gene id rmc1
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26323493 ~ 26345733 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGAACTGTAATAGCCGGCTGTTGAAGTGAACTGTTCCTGCACTGCTGCTGCGGAGTCTGTCAGGATTCTGAACTGAGAAATAAtccaatataataatataaaataatatcagTGACAGTGTGAGGATGAGCGAGGAACATTACCTGGAGCTGTGTGAGAACCCGGTGCAGTTTGAACATGCCTCCAGCGTCAACAACGTCTTCTTCGACGAGGCTAACAAACAGGTGTTTGCCGTGCGTTCAGGTGGAGCCACGGGGGTGGTGGTCAAAGGTCCGGACGACAAGAGCAGCGTTGCCTTCAGAATGGACGATAAAGGAGAAGTGAAGTGTATCAAGTTCTCCATCGGAAATAAGATCTTGGCAGTTCAGAGGACTTCGAAATCTGTGGACTTCATCAACTTCATACCCGACTATCCACACACAGAGTTCACCCAGGAATGCAAGACGAAGAACGCGAGTGTTTTGGGTTTCTGTTGGACCAACTGGAATGAGATCGTCTTCATCACAGATCAGGGAATAGAGTTCTACCAgGTGTTTCCAGACAAACGCAGTCTGAAGCTGCTGAAGAGTCAGAGCATCAACGTGAACTGGTACCAGTACTGTCCCGAGACCACCGTCATCCTGCTGTCCACCACCGTGCAGGGAAACATCCTGCAGCCCTTCGCCTTCAGGaaTGGAACCATGTGCAAGATGTCCAAGTTTGAGATCGAGCTGCCGGTCGTCCCCAAACCTGCCAAACTCAGCCTGTCGGAGAGGGACATCGCCATGGCAACCATtTACGGTCAGCTGTTTGTGATGTATCTGAAGCATCACTCAAGAACGGCCAACAGTCCCAGTGCAGAAGTGGTGCTCTATCACTTACCAagGGAGGGAGCGTGTAAGAAGACGCACGTGTTGAAGCTGAACACGACGGGGAAGTTTGCTCTGAACATCGTGGACAACCTGGTGGTGGTTCATCACCAGAGCACCCAGacGTCTCTGATTTTCGACATCAAGCTGAAAGAACCAGATACTGCCGTGAACATGCACCAACCTGTCCTACCTGCCCGATCCATACACCCCTACAGGATACCGCtggcaggtccAGCAGTCGTTCCCTCTCAGCCTCCTGTACCATGTCAGCTCTACTCTTCCTCCTGGAGCGTTTTCCAACCCGACATCATCATCAGTGCCAGTGAAGGTTACCTGTGGTACTTGCAGGTGAAGTTGCCTCCGGCTGTCAACCTGCTGCAAGACAAAGGCAAACTGATGGACTTCCTGTTACGACGGAGAGACTGCAAGATGGtcatcctgtctgtctgctcacaGATTCTGGAGGGCGGGGAGAAGGGAAGTCTTCCTGTCGTGGCGACTGTCTTTGACAAACTGAACCAGGTGTATAAAGAATACCTGGAGGCAGAGCAGACCTACACCGCGGCGATGGAGTCCGGGCCGAGTCGAGGCAGCGCAGCACACAAACGTCCAGTCAGAACGCAGGCGGTCATCGACCAATCAGACATGTACACGCACGTCCTGTCATCCTTCACAGAGAGGAAGgGTGTCTCCCATAAATTCATCATCGCCGTGCTGATGGAGTATATCCGCTCTCTGAACCAGTTCCAGATCACCGTGCAGCATTACCTGTATGAGTTGGTGATAAAGACGTTGGTGCAGCACAACCTCTTCTACATGCTGCACCAGTTCCTGCAGTATCACGTCCTCAGCGACTCCAAACCACTGGCGTGTTTGCTTCTGTCTCTGGAGAGTACGTACCCTCCTGCACACCAGCTGTCACTGGACATGTTGAAgcgtCTGTCCACGGCCAACGATGAGATCGTGGAGGTTCTGCTGTCGAAGCAGCAGGTTCTGGGTGCGCTCAGATTCATCCGCAGTGTCGGTGGCCATGACAACGTGTCATCCAGGAAGTTTTTGGACGCAGCGCGGCAGACCGGAGACCAGATGTTGTTCTACACCGTGTTCAGGTCGTTCCAGCAGAGAAACCAGCGGCTGAGAGGGAGTCCCAGCTTCAACCCCGGAGAGCACTGTGAGGAGCATGTGGTTCACTTCAAGCAGCTGTTTGGGGATCAGGCTCTGATGAAACCCTCCACTGTGTGAACCTCCTAGGACCAAAACCCTCAGACTGTAAACTTGCCTGGGTCGGACTGCCTCTCCACCTGTTTAGACACACAGGAAGATCAAGAGAAGACCAATCAACATGGAGAACAGATCATCATGGGTTACATGCACACTCGTAAATCATTTCTATTATCCTGTTTCATGTTTGCACAAATAAACATCATATCCTGGTCATATAGTGAGACATGGACCTGATCCAGGTCTCTGACGCATGCAGTGGGTCATCAGTAAGAAAATCATACAATAAATAATTAAGTCTAATTGACTTATTTATGTAGAACACAAGATTTCCGAAACTTAATTTGAGTTGATGGAGTATCGGTATtattatcagtccctccagaaaaacgcgatcaaatttttttaaatatgccgcactttcgccgcataaattgccgattttcacgcaaaatatgcgggg

Function

GO: NA

KEGG:

id description
K24763 RMC1; regulator of MON1-CCZ1 complex

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302320 lncRNA downstream 216506 26106712 ~ 26106987 (-) True G223371
TU302282 lncRNA downstream 236813 26026105 ~ 26086680 (-) True G223348
TU302310 lncRNA downstream 249551 26071089 ~ 26073942 (-) True G223363
TU302295 lncRNA downstream 287692 26035415 ~ 26035801 (-) True G223354
TU302281 lncRNA downstream 299998 26022960 ~ 26023495 (-) True G223347
TU302421 lncRNA upstream 87576 26433309 ~ 26464216 (-) False G223449
TU302422 lncRNA upstream 87576 26433309 ~ 26464216 (-) False G223449
TU302423 lncRNA upstream 87576 26433309 ~ 26476967 (-) False G223449
TU302429 lncRNA upstream 115593 26461326 ~ 26463045 (-) True G223455
TU302417 lncRNA upstream 117560 26463293 ~ 26464216 (-) True G223449
XM_039790127.1 mRNA downstream 175470 26110407 ~ 26148023 (-) True si:ch211-230g15.5
XM_039790129.1 mRNA downstream 175473 26110407 ~ 26148020 (-) False si:ch211-230g15.5
XM_039790128.1 mRNA downstream 176389 26110407 ~ 26147104 (-) False si:ch211-230g15.5
XM_039790611.1 mRNA downstream 213466 26100888 ~ 26110027 (-) True cldn11b
XM_039790947.1 mRNA downstream 489553 25817429 ~ 25833940 (-) True mynn
XM_039790717.1 mRNA upstream 6898 26352631 ~ 26375762 (-) True riok3
XM_039790721.1 mRNA upstream 138196 26483929 ~ 26502727 (-) False LOC120552560
XM_039790720.1 mRNA upstream 138196 26483929 ~ 26502727 (-) False LOC120552560
XM_039790719.1 mRNA upstream 138196 26483929 ~ 26502727 (-) False LOC120552560
XM_039790961.1 mRNA upstream 213702 26559435 ~ 26906332 (-) True LOC120552733
TU302346 other downstream 105169 26216885 ~ 26218324 (-) True G223395
TU302289 other downstream 193371 26059997 ~ 26130122 (-) True G223350
TU302290 other downstream 264431 26054519 ~ 26059062 (-) True G223351
TU302256 other downstream 280629 26041843 ~ 26042864 (-) False G223328
TU302257 other downstream 280629 26041843 ~ 26042864 (-) True G223328
TU302395 other upstream 58268 26404001 ~ 26409357 (-) True G223433
unassigned_transcript_1419 other upstream 101953 26447686 ~ 26447759 (-) True trnai-aau_30
unassigned_transcript_1420 other upstream 104110 26449843 ~ 26449916 (-) True trnai-aau_31
unassigned_transcript_1421 other upstream 120704 26466437 ~ 26466510 (-) True trnai-aau_32
unassigned_transcript_1422 other upstream 121414 26467147 ~ 26467220 (-) True trnai-aau_33

Expression Profile