RNA id: XM_039790728.1


Basic Information

Item Value
RNA id XM_039790728.1
length 2015
RNA type mRNA
GC content 0.58
exon number 4
gene id LOC120552563
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26972847 ~ 26980874 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTAGGGCAACGGGTAAACAAATGGCGCAAGCAACGAGCAAGGCTTGTAGCGTCCCGGGCTGCTGCTGTTACTCCCAGAAGCAGCCGTATCTGTCGTTTCACTCCTTCCCTGTCCACGGTGAAGTCCGACGGAGATGGATTCAGGCTATCCGGCGGGAAGAAGGACCGGACTTTACCATTCAAACCGGGAGCACGTACGTCTGCAGCAGACACTTCACGTTAGACGACTACGTTTTAGGGATGAGTTCCCCCTTCTCCATCACTATCCTCCGGCTGAAAGCAGACGCCGTCCCGAGCCTGTTCCCCTGGAACGATTTCACCCCTGGAGGGAAAATGGACCGTGTGTATGAGCGGAGCCAAAAACGGCCGCCGGTACCGTCCGTAGGAGCCGAGATAAAGGACGTAACACGGCCGCCGGTACCGTCTGTAGGAGCCGAGATAAAGGACGTAACACGGCCGCCGGTACCGTGTGTAGGAGCCCAGATAAAGGACGTAACACGGCCGCCGGTACCGTCCGTAGGAGCCCAGATAAAGGACGTAACACGGCCGCCGGTACCGTCCGTAGGAGCCGAGATAAAGGACGTAACACGGCCGCTGGTACCGTCTGTAGGAGCCCAGATAAAGGACGTAACACGGCCGCCGGTACCGTTTGTAGGAGCCCAGATAAAGGACGTAACACGGCCGCCGGTACCGTCTGTAGGAGCCCAGATAAAGGACGTAACACGGCCGCCGGTACCGTCTGTAGGAGCCGAGATAAAGAAGGCGTTGTATGACGCTTTGAAACGGGAACACGATTATGCGACGCCGCTGCCTGCAGGTATGCTAGACGGGACGGTTGAGTACATCGAGTACCTGGAGGCCCAGCTGAAGAACGCCTTGCGGCCGCCGTCGTCAGACCTCTTCGGCCGCTACTGCGCGTCAGACGACCAGATGAGATTCTACACCAGGTTTCCGTCCGAGCGCGTGTTTCGGATCTTCTGGGAGTCCATCGCCCCTTCTGCCTCTCGGCTGCTCTCCTGGACTGAAGCCCAGAGGATCGGCGAGGGCTCCGGTGACCTCCTCGCCAGTCCCAGCCCCCCTAGCACGCTGCCGTTAATCGATGAATTTCTGATTTACTGTATGCAAGTAGCGGTCGGCGCGAAGGAGCAGGTCATCGCCGACACGTTCCGGATACGTTTAACCGCAGTGAGCCGTGTGACCATCACCTGGGCCAATTACCTCTACTTCCTTCTGGGGGCGCTTCCTCTTTGGGCGAGCAGGGAGAAGGTGAAGGCCGCCATGCCCGGAAAATTCAAGAAGTGCTGTCCCGATGTCCGTGTGATACTGGACTGCGCTGAGATTCCCGCGGCGGCGGCGGCGACGGCTTCCTCTTCGCGATCGCGAGCGTCCTCCCGCTGCAGAAACGGGACGACCTTTAAGCCCTACTTTAAGGGACTGATCGGAGTCGCCCCCCACGGTCTGGTGACCTTCTTCTCGCCGCTGTACGCTGGAAGCGTCTCGGACGAGGAGATGACGAAGGTCAGCGGGGTCCTTCCCTTACTCGAGCCAGGGGACGAAGTGGTGGCCGGCGAAGGATTCGGCATCGGAGAGCTCCTTTCCGGCGTCGGGGCGAAACTGGTCGCTGCGCCGGTCGAGCGTTCAGCCCGCTCCGGGATTACGAGAGAGGACGGCGAGAAGACGCAAGCCGTGGCGCGCCTCAGGACGGTGGCGGGAAGGGTGATAGGCCGAATTAAGTCCAATCACATCTGGGACTCGCCCGTACCTCCCGCTCTGATGGGCACGGTCAGGCAGATCTGGCACAACTGTTGTGTTATGGTGAATTTTCAAGGACCTTTGTCTTTAGACGAAGACTGAGATCTGGAGAGGATGTCGGGATGCGATGATGCATACCAGGGCTGCACAATCAATCGCAAAtctatcgaaatcgcaatatggactatagtgcaatatccaaatcgcaatgtttgttaaaggcaaaatgtgtcaaaccgttctgaatgaagtattgtggggCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638030.1 lncRNA downstream 43826 26920206 ~ 26929021 (-) False LOC120552561
TU302517 lncRNA downstream 43834 26917333 ~ 26929013 (-) True LOC120552561
TU302472 lncRNA downstream 143105 26811655 ~ 26829742 (-) False LOC120552733
TU302473 lncRNA downstream 161101 26800087 ~ 26811746 (-) False LOC120552733
TU302505 lncRNA downstream 215995 26756123 ~ 26756852 (-) True G223493
TU302533 lncRNA upstream 1910 26982784 ~ 26991750 (-) True G223515
TU302535 lncRNA upstream 1910 26982784 ~ 26991750 (-) False G223515
TU302538 lncRNA upstream 1910 26982784 ~ 26991507 (-) False G223515
TU302542 lncRNA upstream 1910 26982784 ~ 26991507 (-) False G223515
TU302548 lncRNA upstream 24449 27005323 ~ 27059504 (-) True G223518
XM_039790722.1 mRNA downstream 4433 26945450 ~ 26968414 (-) True ssr1
XM_039790724.1 mRNA downstream 4434 26945450 ~ 26968413 (-) False ssr1
XM_039790961.1 mRNA downstream 66515 26559435 ~ 26906332 (-) True LOC120552733
XM_039790721.1 mRNA downstream 470120 26483929 ~ 26502727 (-) False LOC120552560
XM_039790732.1 mRNA upstream 6451 26987325 ~ 27054356 (-) False LOC120552564
XM_039790731.1 mRNA upstream 6451 26987325 ~ 27054356 (-) False LOC120552564
XM_039790730.1 mRNA upstream 6451 26987325 ~ 27054356 (-) True LOC120552564
XM_039790733.1 mRNA upstream 6451 26987325 ~ 27054354 (-) False LOC120552564
XM_039790734.1 mRNA upstream 17178 26998052 ~ 27054360 (-) False LOC120552564
TU302432 other downstream 462720 26484235 ~ 26510127 (-) False LOC120552560
TU302433 other downstream 462720 26484235 ~ 26510127 (-) False LOC120552560
TU302435 other downstream 469694 26484235 ~ 26503153 (-) True LOC120552560
TU302399 other downstream 496936 26471704 ~ 26475911 (-) True G223435
unassigned_transcript_1423 other downstream 505015 26467759 ~ 26467832 (-) True trnai-aau_34
TU302546 other upstream 123724 27104598 ~ 27188218 (-) True G223516
TU302573 other upstream 496392 27477266 ~ 27483161 (-) True G223538
TU302721 other upstream 659690 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 698541 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 713980 27694854 ~ 27700381 (-) False LOC120552596

Expression Profile