RNA id: XM_039790731.1


Basic Information

Item Value
RNA id XM_039790731.1
length 4624
RNA type mRNA
GC content 0.55
exon number 35
gene id LOC120552564
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 26987325 ~ 27054360 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctttgtgctgcattcacgGACCTCTGGGAGATACGTTTGAGAACCCGTGACCTACTGCAACCAAACCATCACTGTACTACAAATAAGGTAGTACAGGTTAATTAAGAGTGTAAGTACTTCTTCTGAATACGTTTTGCCGTGTTGTCGTCTCTAGAACAAGTACAAGGAGAGTGGGAAGAAGAGCCAGGCCGTCAGCGTTTACTCCCAGCTCCCAGAGACTAACCAGATCCAGTTTGCCAAAGCTGTTTCCGAAATACAAAGTGAGAGCAAATATAAAGAAGCAGGCAGGAAAGAGGCGTCCAGCTGTCTGTATTCGAAGCTGCCCGAGACTCGGGACACTCTGCACGCTAAGGAGGCTTCCCAGCTGCAGAGTCAGGTGAAGTATAAACAGGACAGTCAGACGGAGACGAGCGCGTCTCTGTATCACCAGCTAGCTGAAACCACCGAGACGCAGCTGGCCAAAGAGCAGAGAGACCTCTCCAGCCAGGTGAAGTATAAAGAAGAGGGGAAGAAGGAGATGGGGAAGAACTTGTACTCGCTCCTCCCTGAGACGGCAGAGACCCACTTTGCCAAGCACATGTCGGAGATACAGAGTCAGGCGAAGTACCAGAAGGAGCGAGAGGATCTGGCCGCCCCGTTGTTCTCTCTGCTGCCGGAGACTCTGGAGACTCAGTTTGTGAAGGAGATGGCCGAGACCCACAGCCAGGTCAAGTACAAGGAGGCAGGGAAGAAGGAAGCCAGCAGCGCTCTGTACCACCGGCTGCCTGAGACTCTGGAGACGCAGCGAGTTAAAGAGGTCACGGAGCTGCAGAGCGAGAACAAGTACAAGCAGAGCGGGAAGAAGTCAATGTCGTCCAGTCTGTACGCTCAGCTGCCGCAGACGGCCGAGACGCAGCTCGCCGCCAAGATGTCCGACCTGCACAGcgagAGTAAATACAAAGAGGACGGGATCCGGAGCCGCTCGCACAGCTTCTACTCTCAGCTTCCAGAAACCGCAGAGACCGCGCTCGCTAAAAGCGTCTCCGAGCTGCAGAGCGAGGCCAGGTACAAGGAGGCGAGCAGGAAGGATGCGAGCAGCTGTCTGTACCACCAGCTTCCTGAAACTCTGGAGACGCTACACGCTAAAGAGGCGACCGAGCTGCAGAGTCAGCTGAAGTACAAGGAAGGAGGTCAGAAAGAGCGGAGCAGCAGCCTGTACTCGGCGCTGCCGGAGACCGAAGAGATGAAGGTCGCCAAAGCCGCCATGGAGCTTCAGAGTGAGaATAAATACAAGCAGAAAGGCAGACAGGAgatcagctgcagtgttttccACCAAATGGCGGAGACCAAAGAGACGGAGTTTGTTAAGCACATCTCTGAACTTCAGAGCCAGACGAAGTACCAGAAGGAGCGAGAGGATCTGGCCGCCCCGTTGTTCTCTCTGCTGCCGGAGACTCTGGAGACTCAGTTTGTGAAGGAGATGGCTGAGACCCACAGCCAGAGTAAATACAAGGAGGCGGGGAAGAAGACGCTGGTGAACTGTCTGTACTCTCTGCTGCCTGAGACCAAAGACACTCAACATGCCAAGGAGCAGAGCCAGCTGCACAGCGAGAAAGCGTACAGGGAGGAGGGTAAGAAGGAGGCCGGCTGCAGTCTGTACGCCCAGATGCCCCAAACCATCGAGACCGTCTTCGCCAAAGAGCTGACCAAGACGCAGAGCGATaagGTGTATAAGGAGAAGTATAACCGTGAGAAGGGGAAGTCCAGCTACACCAACATGAAAACTCTGCCGGAGGTGGAGCACGCCATGGAGGTCAACAAGAACCAGAGCgatGTCGGCTACCGAAAAGGCAAAGAGGAGCTTCATCACTACAACCTGGCGGCAGACAGAGCTGACATCATCAACGCCACCAACGCCTCCAAACTGGCCAGCAacGTAGCCTATAAGAGTAACACCAAGCAGCAAGTTTACAGTGACGGCTTTCTTTTGGCCAGAACTGACATCCAGCACGCCAAGGAGGTTTCAAAGCTGGCCAGCCAgGTGAAGTATAAGGAGAGCTTCGACAGACATTTAAAGGGCCAGCGTCCTCGTTACAACCCGCTGGACTGTCTGtccttcagacacacacaggctgctgctgctctggccAGTCAGGTGAAGTATAAAACCAAGCCGAGCCAGAGAGCCGAGGGCTCCGCAGACCTGCCCAACCTGCTGCAGCTGGAGCACGTCCTGCACGCCAGCAAGCTGCAGAGCGACgtgGAGTACAGGAAGGAGTACAAGCAGGCCAAGGCTCAGTACCACACGGCTCTGGACACGGCTGAACAGCTCCACCACCGGGAGAACGCAGTGCTGCACAGCCAGGTGAAGTACAGAGAGGAGTACGAGAGGAACAAAGGTCGCTCTCAGATGGACTTTGAAGACACTCAGACGTACAAAGTGACTAAAGAAGCCCAGAAGATGCAAAGCGAGAGAGAGTACCGGAGGGAGTACGAGGAGCAGATTAAGGGTACAGGCCTGGTGGATGCAGACCAGACCCCCGCATACCTGACAGCCTGCCACGCTAGCAGCCTGCTGAGCGAGaaggcGTACAGGAAGGACTTGGAGCAGGAAGTTAAGGGGCGGGGCTTATCCGGCGTCGGGCTGGAGGAAACACCTGAGCTGCTGAGGGTTAAAAATGCCAATCAGATACTGAACgagAAGGAGTACCGCAGGGATTTAGAGACGGACATCGTGGGTAAAGGCATGGAGCTGAGCGCCAACGTTCTCGATATGCAACGAGCCAAAAGAGCCTCAGAGATCctgaggtCCAACAAGCAGACGGAGCAGCTCAGAGAAAACTCCTACGGGACGGTTACAGACACTCCTGAACTTCTGCACGCCTCCTACCTCAAAGACGTCTacagccagAAGAAGTATAAGCACGAAGCGGAGCGTCTGAAGGGACGCTACAGTCTGGTGTCAGAGACaccagagatggagagagtcAAAGCCAACCAGAGACACATCAGCTctCTGCGCTACTGCTGGGACTCCAAGCTGATGAGAGGCCTGATGTCTTCGGTCACAGAGACGCCAGAGATCGTCCTCGCCAGAGAGAACGCCAAGAAGATCAGTGATGTCGAGTACCGAGAGGAAGTGGGTCACGGTACCGCCGTCAGGGACACGCCAGAGATGGAGCGAGTCCGACGCAACCAGGAGAACATCAGCTCAGTCAAGTACAAGCAGAGTGCAGTGAAGGCCTCCAGCGTCGGAGTGACTCCAGAACTGGAGAGAGTCCGACAGAACCAGGAGAACATCAGCTcgGTGAGGTACCAGCGCGGGCTGCAGGAGATGAGGGGGCGGAGCCTCAGCGAGCTGGACACACCTGAGTACAGGCGTGTCAGGAAGTCACAGGACTCTGTCTCCATGGCCAAGTACCACGAGGACTTTGAGCGGGCACGCGGCCGAGGCTGCACGCCAGGATTGGACGAGCCCAGCATGGAACGCTACCAGAGAGCCAATCAGATGATCGCAGAGGCGGGATACAGCAAAGGGATCCACCCCCAGGCGATGGAGATGGACAGACGACCGGGGGGCATCATCGTAGACCTGAAGGTGTGGAGGACGGACCCCGGCTCCATCTTTGACTTTGACCCTCTGGAGGACAACATCCAGTCCAAGAGCCTCCGCAGGATGTCTGAGCGGGCCGAAAGCAGACTCAGCCGGCAGCACTCGCAGCAGTCTGTCAGCCACAGCCGGGCGCAGTCGGTCAGctccctgacctctgacctctgggaCCGCAGCAGCTCCGAAACGCCCGCTCCAGTCCTCCCTGGAGCGTACCATCAGGGCATCCACATgcaccagcaccagcagcagcagcagtatcaCGGCTACATGCACCAGACCAGCATGTCGTCCGTCAGATCCGTCACCTCCCCCCCGCACTCCGCCACAATGCGTGTTTACCGGGCGCTGTACGACTACGCGGCGCAGGACCACGACGAGGTCTCCTTCAGGGACGGAGACGTCATCGTCAACGCTCAGCCCATCGACGAGGGCTGGATGTACGGCACCGTGCAGCGCACCGGCAAGTCTGGCATGCTGCCGGCGAACTACGTGGAGTGCTGCAActagaggagagaggagagaggtagagaggtagagagggagagaggtagagagggagagaggtagagaggtagagagggagagaggtagagagggagagaggtagagagggaggaagggagagggaCAGGGGGGAGAAATGGTAAAAATGTGATGAATGAAATCCGCCCTTGCTGTTAAAAAGTCAGCAGTCGGTGATGTTCCTTGCATTTCAGGGATGGTTTACATTTTTTGGATGTTTCAAATAcagacaaaaatgtgtttttgttttttttttaaatcaggaaATAGACCAGAATGCAATGCAGCTACAGGGACAAGGAGCTGTGTTGGAGACCGTTTCCATATCACAGAAATAGTTCCCTATATAGTGCGTTCGGCATTTTGTACAGTAGTGGTGTTCGAATCCTCCGCGGTCACTATATAGTCCTATTAtgaaatacccacaatgcactgctaatttgagtgtacatacgatgtacagtacaggccaaaagtttggacacactttctcattcatttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302552 lncRNA downstream 10031 26976478 ~ 26977294 (-) True G223522
XR_005638030.1 lncRNA downstream 58304 26920206 ~ 26929021 (-) False LOC120552561
TU302517 lncRNA downstream 58312 26917333 ~ 26929013 (-) True LOC120552561
TU302472 lncRNA downstream 157583 26811655 ~ 26829742 (-) False LOC120552733
TU302473 lncRNA downstream 175579 26800087 ~ 26811746 (-) False LOC120552733
TU302564 lncRNA upstream 33377 27087733 ~ 27088197 (-) True G223534
TU302571 lncRNA upstream 103617 27157973 ~ 27483161 (-) False G223538
TU302593 lncRNA upstream 199142 27253498 ~ 27254197 (-) True G223552
TU302592 lncRNA upstream 201504 27255860 ~ 27264163 (-) True G223551
TU302595 lncRNA upstream 212892 27267248 ~ 27267746 (-) True G223554
XM_039790727.1 mRNA downstream 6451 26972847 ~ 26980874 (-) False LOC120552563
XM_039790728.1 mRNA downstream 6451 26972847 ~ 26980874 (-) False LOC120552563
XM_039790726.1 mRNA downstream 6451 26972847 ~ 26980874 (-) False LOC120552563
XM_039790725.1 mRNA downstream 6451 26972847 ~ 26980874 (-) True LOC120552563
XM_039790729.1 mRNA downstream 6890 26972847 ~ 26980435 (-) False LOC120552563
XM_039790963.1 mRNA upstream 82415 27136771 ~ 27189544 (-) True LOC120552735
XM_039790757.1 mRNA upstream 140974 27195330 ~ 27205153 (-) False LOC120552579
XM_039790756.1 mRNA upstream 145045 27199401 ~ 27205153 (-) True LOC120552579
XM_039790772.1 mRNA upstream 169398 27223754 ~ 27224992 (-) True LOC120552591
XM_039790742.1 mRNA upstream 204017 27258373 ~ 28497020 (-) False LOC120552569
TU302432 other downstream 477198 26484235 ~ 26510127 (-) False LOC120552560
TU302433 other downstream 477198 26484235 ~ 26510127 (-) False LOC120552560
TU302435 other downstream 484172 26484235 ~ 26503153 (-) True LOC120552560
TU302399 other downstream 511414 26471704 ~ 26475911 (-) True G223435
unassigned_transcript_1423 other downstream 519493 26467759 ~ 26467832 (-) True trnai-aau_34
TU302546 other upstream 50242 27104598 ~ 27188218 (-) True G223516
TU302573 other upstream 422910 27477266 ~ 27483161 (-) True G223538
TU302721 other upstream 586208 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 625059 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 640498 27694854 ~ 27700381 (-) False LOC120552596

Expression Profile