RNA id: XM_039790735.1


Basic Information

Item Value
RNA id XM_039790735.1
length 5561
RNA type mRNA
GC content 0.54
exon number 27
gene id LOC120552566
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 28781890 ~ 28846253 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAGTCTCGGTGTGTCCTCCAGGTCTCGTCATTCAGCTTCAGCTTCAGACCCAGAACCAGCTCCAGAGTCTCCGTCCCGGCTGCTCATGGAGAGACTCTCGGCTCTCAGCCGTCACAGGAACTCAAACTTTACAggagtttaattaaaaaaaggaaagaagaaagaaagaaagaaaaacagccgCACACATGACGTTTTGGATAGGAGGAGgagcggcgctgctgctgctgctgctcggcCGCTGCTGCTGCACCGATCCCGGCAGGAAAGtgtgcCAGGGGTTGAGTAACCAGCTGACCTTGTTGGGGACCCGGGACAATCACTATGACAACATGGTGAGGATGTACGCTAACTGCTCCGTGGTCCTGGAGAACCTGGAGGTCACGTACACGCTGGAGCACCAGGACCTGTCCTTCCTGCAgAACATCCAGGAAGTGGGCGGCTACGTTCTGATCGCCATGAATGAAGTGGCCACCATCCCATTGGTCAACCTGAAGGTGATCCGAGGTCAGAACCTGTATGACAACCACCTGGCTCTGCTGGTCATGTCCAACTACAACCAGAACCGCTCGTCTCCTACGCTCAACTACAGCAGTGGGCTGAGACAGCTGCAGCTCAGCAGTCTGaccgAGATTCTGAAAGGAGGCGTAAAGATGACCAACAATCCGTTGCTATGCAACACGGAGACCATCCAGTGGTGGGACATCCTGGACAGAAGCAGCAACCCCAGCATGGTTTTTAAGACAAACACCTTCACACCTAAATGTCAGCAGTGTGATCCCGGCTGTTTTAACGGCTCGTGTTGGGCAGCAGGACCGGATCACTGCCAGAAATTCACTAAGCTGCAGTGTGCCGAACAGTGCAGCCGGAGGTGCCGCGGGCCCAAACCCAGCGACTGCTGTAACGAACACTGTGCTGCCGGCTGCTCCGGACCGCGAGCCACCGACTGCCTGGCCTGCAGGGATTTTAACGATGACGGGACGTGTAAAGATGCTTGTCCTCCTCAGACTCTCTATGACCCAAAAACCCACCAGGTGGTCAGCAACCCCAACGCCAAGTTCACCTTTGGGGCGACCTGCGTCAAAGCCTGCCCATATAACTACGTGGTGACAGATGGGTCGTGTGTTCGTACCTGCGGCGCTGGGATGTACGAGATGGAGGAGAACGGAGTCCAACGCTGCAAGGCATGTGACGGTCCCTGTCCTAAAgtCTGTGATGGCGTCGGGGTAGGCGCTCTGATTAAGACGATGGCCGTGAACGCCTCCAACATCGAGTCCTTCAGGAACTGCACCAAGATCAACGGGGACGTGTCCCTCATTGGGACGTCCTTCACCGGGGACGCGCACTATAAAATCCCTCCCATGGACCCGGCTAAACTCGAGTACTTCAGGACAGTAAAGGAAATCACAGGTTTTCTGGTGATCCAGTCCTGGCCGGAGAACCTGacgtctctgtctgtgtttgaaaACCTGGAGATAATCAGAGGAAGAACAACACACGCGCAGCACAGTCTGGCCGTGGTGCGGGCCAAGCACCTGCGCTGGTTGGGTCTGCGCTCTCTGAAAGAGGTGAGCGCCGGCTTGGTGATCCTGAAGGACAACTCTGAGCTGTGCTACACGCGGCCCGACCAGTGGACGCGCCTCTTCAGATCCAGAGACCAGACGGTCAGCATGCGCCAAAACGCTCCCCCAGACTTCTGCGAAAAGCAGAATCGAACCTGTGACCTGGAGTGTACAGACGATGGCTGCTGGGGTCCGGGTCCCACGATGTGTGTCGCCTGTCGGCAtttcaacagcagggggcgctgtgTGGCGCACTGCAACCTGCTGCAGGGCGAGCCCAGAGAGGTGGAGGTGAACAGTAGCTGTGTCCAGTGTCACCCAGAGTGTCTGCTGAAGACCGGGACCCCGACCTGCCACGGACCAGGTCCGgaccagtgttcccagtgtGCCCACTTTAAAGACGGCCCCCACTGTGTAGCGCGCTGCCCCCACGGCGTGCTGGGAGACGGAGACACGCTGATCTGGAAATACCCCGacgggtcaggccagtgccagcCTTGCCACCAGAACTGCAGCGACGGgTGCTCTGGAGCCGGACTGTCTGGATGCACCGGTGCTCCCACCCACTCCACGCTGGCGGCCGGCGTGGTCGGCGCGCTGCTGATCGCCGTCATCGTGTCAGTGGTCATCTTTGTGTTGCTGCGGCGACGAAGAATCCGGAGGAAGAGGACCCTGCGCCGGCTGCTGCAGGAGAGAGAGCTTGTGGAGCCGCTGACTCCAAGCGGCGAGGCTCCGAACCAGGCGCTGCTCCGCATCCTGAAGGAGACAGAGTTCAAGAAAATCAGGGTGCTCGGCTCCGGGGCCTTCGGGACCGTCTTCAAGggTCTGTGGATCCCCGAGGGAGAGAACGTGAGGATCCCAGTAGCCATTAAAGTTCTCCGAGAGGCCACGTCACCTAAAGCCAACAAAGAAATCCTCGATgaggcgTACGTGATGGCGAGCGTGGACCACCCACACGTGTGTCGCCTGCTGGGGATCTGCCTGACGTCGTCCGTCCAGCTGGTCACTCAGCTGATGCAGCACGGCTGCTTGCTGGACTACGTCCGGCACCACCGGGAGAACATCGGCGGCCAGTGGCTGCTCAACTGGTGTGTCCAGATCGCCAAGGGGATGAACTACCTGGAGGAGCGTCACCTGGTGCACCGAGACCTGGCGGCGAGGAACGTCCTGGTGAAAACTCCGAACCACGTCAAGATCACAGACTTCGGCCTCGCCAGGCTGCTGACGGCCGACGAGAAGGAATACCACGCTGACGGGGGGAAGGTTCCCATTAAGTGGATGGCGTTGGAGTCAATCCTCCAGTGGACCTACACACATCAAAGTGACGTCTGGAGCTATGGTGTGACCGTGTGGGAGCTGATGACGTTCGGCTCCAAGCCGTACGACGGCATCCCGGCCAGCGACATCTCCGCGGTGCTGGAGCGAGGAGACCGGCTGCCGCAGCCGCCCATCTGCACCATCGACGTCTACATGATCATGGTGAAATGTTGGATGATCGACCCGTCCAGTCGTCCCAGGTTCAGAGAGCTGATAGTGGAGTTCTCTAAAATGGCCAGAGATCCATCCAGATACCTggttgttcagGGCAACCTCCCCAGTCCGACAGATAGCAGGTTTTACTCTCGCCTGCTGAGCTCAGACGACATGGAGGATGTGGTGGATGCTGAGGAGTATCTGCAACCTTACAAAGGACAGGGTAACCAGGACAACCATTCCTGCAGCGCCACGAATTGTTATCCAGTCAGAGAGAACAGCATCGCCCTGCGTTACATCACCGACCCGACGCACAACACGCTGGAGAAAGAAGACTTCCCCGGCCACGagtACATGAACCAGAGTATGAGTGACAACAGCCGGAGCAGCAGGCTGTCGGATGTGTTGAATCCCAACTACGAGGACCTGAGCCTGGGTTGGGGCGCGGCCTCGCTCCCCTTCCCGCTGGAAGATCTGAAGCCTTTTCCCAGAGTTCCCAAGGACCCCGAGGTCCCTGAGTACCTGAACACCGCCCAGAGCTCACTTCCGCTGGTCGCCAGCGACAGCCTCGACAACCCGGACTACCAGTCGGACTTCCTGCCCTCCGCCACGAACAGTGTTCCTTTAACGGGGAATGGTCTGTTCCTCCCGGCCGCAGAGAACCTAGAGTACCTGGGTCTGGGTGCTGCGCTGCACGCCCACGTCCGCTAGGGGGGGCGATGTGCCTCGGCCTTCAGACACTTAAAACTAAAGCTGTGATGTTCTGTGGAAAACAAACTGCCTGTGGGTACGcgatctgtgctgcctgcacgatccaacatgatgataatcctgttttacgcACCTTTGCACTGCAATAGCAATGAATCGCAAAGGGGAGTGCCCCCCTAGAGGACACGTCACACTTTTACTCCCCATAGGTCGGTATGCaatctgtgctgcctgcacgatccacgatgcgcatgcgcagatgataatcctgtttacaccactgcacgatctgttccacgcttgcGCACTTTTGCACCGCGGgaatttcattcatttcacaGCGCTCGCAAAGGGGAGAGTGGAGGAAACTGAAGGTCAGCAGTGACAGAAAGACTCAGACTTCATTCCACATGGAACCAACATGGTGTATGTTCATGTAACATGTAACAACTCCTTTATTATTTTGGATTGGCAACCACGTAAACACCTCGTAATGctacataatacataataagctacatttaaaaacatcacgACATCCCCACACTACATGTCACACAAATAACAATGTTGCCAAGACGTCCACGGACGACGAAATGCGGTTTTGGATCAGTGACAATAAGTACTTCTTTTAAATATCTTTATAAAACAGACCTGCCCAATGAATAacataaaatgtagcctacaaaaATAGGCCGCCAGTTGTGCCGCCTGGCCGTATGCGTGATACAAATAGCGTAGGGAAACCGTCACGTTTTCTACTATGTATTTCAGCGCATgcacaacccgttctcactctgaACTCGTAAAATTTGTACGTTTGTAGAACGTACCGGGGAGTGCAGCAGCTACAAAGGgtttagagagtagtatgtaaggacGAAATTCTGCGCACGAagattggtcggggtggtggatgggtcaaacacagaattttcacccaggagactgggaaTCATGTCACTCTGGGATCGGCATGTTTCctaaagtcgctttcttctttaagcccacccatgaccttttccttaacataactgcgtcaaaagggccgccaatagtcccgaccaattTTCAGCATTTAGATAAAGCGCGTTATAggacactaaaggagacttttagcgtcatataaaaacGACAAAAGCACCCGACCAagtgtccgtattttacgagatgggagcgAGAATCTGTTTGCATGCGCATTTCGGATCttgcaggcagcacagatcgCGTACCGACACTGCCGCCTGCTTGGATTCATACTGCTGACAGTATTTAATGTAGCTGTATTTATTGTAAAGTCTTCCAGGAAATGCTGACTGAGCGTTTTCTGCGTTTTACACTGGAACACAACGGCAATCAGGCCGCCGTTACAgcgggagaggagagacagacgcTTTGCAGGGATTCAAACCGTTAGCGTCCCATATGTTAGCGGTGCGTAGGAAACCatgcacattatttttttttgggacaatttggttgaaagaacaTCCAGATTTCAGAcatagaaacattttgaaaacgggttAACAGGAAGGTTAAAGAAGTTAATGCCCTTAAAGGGTACCTACCTTTTTTTCACCCTGTACCCTATGTTCCTATTatagttaataggacaattgtaaaatttgtatttaccttcacaaaagttctgtttttgctgctgacagactctgacAGTGTCTCACAACATTATgaaaaaggatttctaaggaggtcgacctctCTGTTGAAgagttttttaaacataaaaacatccaccAAACTGCGTTCgcaaaacccaccagactcctagtaaataaacagtaatttt

Function

GO: NA

KEGG:

id description
K04361 EGFR, ERBB1; epidermal growth factor receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302858 lncRNA downstream 7643 28708699 ~ 28774247 (-) True G223692
TU302861 lncRNA downstream 20680 28667074 ~ 28761210 (-) False G223694
TU302860 lncRNA downstream 47710 28667074 ~ 28734180 (-) True G223694
TU302863 lncRNA downstream 70181 28646064 ~ 28711709 (-) True G223696
TU302987 lncRNA downstream 87421 28658909 ~ 28694469 (-) False G223778
TU303014 lncRNA upstream 4411 28850663 ~ 28852850 (-) True G223798
TU302869 lncRNA upstream 16123 28862375 ~ 28902431 (-) True G223700
TU303025 lncRNA upstream 61789 28908041 ~ 28928511 (-) True G223808
TU303084 lncRNA upstream 296676 29142928 ~ 29145651 (-) True G223847
TU303088 lncRNA upstream 317704 29163956 ~ 29165000 (-) True G223851
XM_039790742.1 mRNA downstream 284870 27258373 ~ 28497020 (-) False LOC120552569
XM_039790736.1 mRNA downstream 426243 28303334 ~ 28355647 (-) True LOC120552567
XM_039790778.1 mRNA downstream 1081559 27694340 ~ 27700331 (-) False LOC120552596
XM_039790779.1 mRNA downstream 1081559 27694340 ~ 27700331 (-) False LOC120552596
XM_039790780.1 mRNA downstream 1081559 27694340 ~ 27700331 (-) True LOC120552596
XM_039790785.1 mRNA upstream 83979 28930231 ~ 29094205 (-) True dnah5l
XM_039790743.1 mRNA upstream 278962 29125214 ~ 29147661 (-) True LOC120552571
XM_039790744.1 mRNA upstream 278962 29125214 ~ 29147658 (-) False LOC120552571
XM_039790769.1 mRNA upstream 305182 29151434 ~ 29161971 (-) True LOC120552587
XM_039790764.1 mRNA upstream 454692 29300944 ~ 29319934 (-) True LOC120552583
TU302839 other downstream 449698 28207446 ~ 28332192 (-) False G223686
TU302917 other downstream 586465 28194528 ~ 28195425 (-) True G223746
TU302918 other downstream 586465 28194528 ~ 28195425 (-) False G223746
TU302806 other downstream 866057 27897498 ~ 27915833 (-) False G223681
TU303066 other upstream 454438 29300690 ~ 29305614 (-) False LOC120552583
TU303131 other upstream 633557 29479809 ~ 29543351 (-) False LOC120552608
TU303133 other upstream 634366 29480618 ~ 29490705 (-) False LOC120552608
TU303182 other upstream 704143 29550395 ~ 29563368 (-) True G223911
TU303168 other upstream 891364 29737616 ~ 29746456 (-) True G223897

Expression Profile