RNA id: XM_039790736.1


Basic Information

Item Value
RNA id XM_039790736.1
length 3724
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC120552567
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 28303334 ~ 28355647 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGAGCAGATCAAGGTACACTACCACACCTGTAGCTGCAGCACCTTACAGTGAGAAGAGGAAGAGTAGAGTCAGGTGAGACTCCATTTAGTGAGAccagaagagaggaagaggaggaaactGAAGGCTGAGCAGGACTGACTTCAGATCAGAAGATGAGTgatttggaggaagaggaggacggaGCAGAGTCTGTAGTATCTGGCTGTCAGTCTATGAAGAGTGACCGGTCCAATGATAAACCTCTGACCTTCAGTAAAgaacctggaccctcagacacaaaACTGACTTCAGATCAGAAGATGAGTgatttggaggaagaggaggacggaGCAGAGTCTGTAGTATCTGGCTGTCAGTCTATGAAGAGTGACCGGTCCGTAGGACAACCTCTGAACTTCAGTAAAgaacctggaccctcagacacaaaAGTCCAGAacaacagacagagagcagagtctGGAGTATCTGGCTGTCAGTCTATGAAGAGTGACTGGTCCAAAGGTCAACCTCTATACTTCAGTAAAgaacctggaccctcagacacaaaagagaagaggagtgaTGTTTCTGAGGAGGAGCTgtccagaaccagaaccagaaccagaactgGACTGCAGACAGCCAGTCAGAGCAGCTCTGAAAAAATGTACGttgttaaacataaacataagatCAGAGTGAAGGAGACATTTGAACGTGTGACTGAAGGAGCTGATCAAACAGGAAGTAGAACCCTCCTCAACAGGATCTTCACTGCGCTCTACATCACAGATGAACTGAGTGAAGAAGTTAATACCCAACATGAGGTGAGGCAGCTCGAGACAGCTTCCAAGATGGAGACCCTCCATGACTCTCCAATCAAGTGCAGCGACATCTTTAAAGCCTTACCTGaccaacagaaacacatcagaGTCGTTATGATGATCGGCGTCGCTGGCGTTGGAAAAACCTTCTCAGTGCAGAAGTTCTGTCTGGACTGGGCCGAGGGTTTGGAGAACCAAGATGTGGATCTGGTGATTCCTCTTTCCTTCAGGGAGCTGAACTTGATCAAAGATGAGCAGTACAGTCTTTTGGAGCTGCTCCGTGTTTTCCATCCAACATTACAGGAGGTCACAGCAGAGCAGCTCGCTGGCTCTAAAGTTCTCTTCATCTTTGACGGCCTGGATGAAAGCAGACTTTACCTGGATTTCAACAACAATGAGGCTGTTTCTGATGTCACACAGAAGTCATCAGTCAACGTGCTGTTGACAAACCTCATCCAGGGGAAGCTGCTTCCCTCGGCTCTCGTCTGGATAACTtcccgacctgcagcagccaatcagatccctcctgcgtGTGTTGACAGGGTAACAGAAGTACGAGGCTTCACTGACgaccagaaggaggagtacttcaggaagagagtcagtgatgaagagctgtccagcagaatcatctcccacatcaagacctccaggagcctccacatcatgtgtctgatcccagtcttctgctggatcactgctacagttctggaccaCATGTTGACTACAGACCagagaggagagctgcccaagaccctgactgacatgtactcacacttcctgctggttcagacaaagagaaagaaactcAAGTATGCTGAGGGACATGAGACGAGTCCACAGGAGCTGACGGAGGCTGACAGGGAAGTTCTTCTGAAGCTGGGGAGGCTGGCGTTTGAACAGCTGAAGAAAGGAAACATCATGTTCTACCAAGAAGACCTGGAGCGCTGTGGTCTGGATGTCACAGAGGCCTCGCTGTACTCAGGAGTTTGTTCAGAGATCTTCAAAAGAGAGAGTGTGATCTTCCAGAAAACAGTCTACTGCTTCGTCCATCTGagcgttcaggagtttctggctgcagtctacctgttccactgttacaccaacaggaacacacaggtaCTGGAGGACTTCCTGGGAAAAGGCTGGGACTGTGACAACAGTGACCTGAAAGATGGCAATGATGGTGACAGTGAACAGGACTTCCTGGGACCAGACTCAAACGCCTCAAAAAAACCCGTCCCAAAGTCTTTTCTCAAGAATATTTTTAAGTCTTTTGGGAATAAAGATAGCTATGATGAAAGTGACAATGATCATTACCCATCTCTGGATGTCTTCCTGAATAGAGCCATGGAGAAATCCCTTGAAAGTAAAAATGGCCACCTGGATCTGTTTGTCCGCTTCCTTCATGGCCTCTCTCTGAAGTCCAACCAGAGACTCTTAGGAGGCctgctgggtcagacagacaacagtccAGAAATCATCCAGAGAGCCATCAACAACCTGAAGGAGATGAACAGTGATGGGATCTCTCCTGACAGAAGCATCAACATCTTCCACTGTCTGACGGAGATGAACGACCACTCAGTCCATCAGGAGATCCAAGAGTTCCTGAAGTCAAAAAAGAGATCAGAGAAGGAACTCTCTGTGATCCACTGCTCAGCTTTGTCCTACATGCTGCAGATGTCAGAGGAGGTTCTGGATGAGTTGGACCTGGAGAAGTACAATACATCACAGGAGGGAAAACTGAGACTGGTTCCAGCTGTGAGGAACTGCAGAAAGGCTACATTGAGGAGCTGTggtttgtcagagatcagctgtgctcCTCTTgcctcagctctgaagtccaacccctcccatctgaaagAGCTGAATCTGAGAGACAACGAGAACctgaaggattcaggagtgaagctgctgtgtGCTGGATTGGAGAGTCCaaactgtagactggagactctgagATTGGAGAGCTGCggtttgtcagagatcagctgtgctgctctggcctcagctctgaagtccaacccctcccatctgaaagAGCTGGACCTGACTAGAAACTACGACctgaaggattcaggagtgaagcagctGTGTGCTGGATTGAAGAGTCCaaactgtagactggagactctgagATTGGAGAGCTGCTGgttgtcagagatcagctgtgctgctctggcctcagctctgaagtccaacccctcccatctgaaagAGCTGAACCTGAGAGACAATAAGAACctgaaggattcaggagtgaagcagctGTGTGCTGGATTGGAGAGTCCaaactgtagactggagactctgagattgTGGAGTTGCggtttgtcagagatcagctgtgctgctctggtctcagctctgaagtccaacccctcccatctgatgCAGCTGTACCTGGGTAACAACAAGGAGctgaaggattcaggagtgaagctgctgtgtggtttTCTGGAAAGACCAAACTGTGGACTGGTGACTCTGAGttTGAGATACTGCGGTTTGTCAAAGATCAGCTGTGCTgctctggtctcagctctgaagtccaacccctcccatctgaaagagctggacctgagtggCAACAACGAGctgaaggattcaggagtgaagctgctgtgtggtttTCTGGAAAGACCaaactgtagactggagactctggGattgTATTACTGCggtttgtcagagatcagctgtgctgctctggtctcagctctgaagtccaacccctcccatctgaaagAGCTGGAGCTGAGGGACAACTACCTGAAGGAGTCAGACGTGAAGCAGCTGTGTGATCTGAAGGAGAGTCCAgactgtagactggagactctgagATGGAGGTGATCTCTGTCAGACTGAtcaggaggaggatgttggagGACCAGCTGAGTCCTGATGAGGAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302865 lncRNA downstream 366 28251425 ~ 28302968 (-) False G223697
TU302864 lncRNA downstream 366 28301778 ~ 28302968 (-) True G223697
TU302930 lncRNA downstream 67263 28231070 ~ 28236071 (-) True G223752
TU302931 lncRNA downstream 71845 28231070 ~ 28231489 (-) False G223752
TU302919 lncRNA downstream 108089 28176365 ~ 28195245 (-) False G223746
TU302945 lncRNA upstream 39477 28395124 ~ 28395876 (-) True G223761
TU302872 lncRNA upstream 45316 28400963 ~ 28402922 (-) True G223703
TU302928 lncRNA upstream 47352 28402999 ~ 28457656 (-) True G223751
TU302946 lncRNA upstream 49982 28405629 ~ 28407886 (-) True G223762
TU302947 lncRNA upstream 49982 28405629 ~ 28406685 (-) False G223762
XM_039790778.1 mRNA downstream 603003 27694340 ~ 27700331 (-) False LOC120552596
XM_039790779.1 mRNA downstream 603003 27694340 ~ 27700331 (-) False LOC120552596
XM_039790780.1 mRNA downstream 603003 27694340 ~ 27700331 (-) True LOC120552596
XM_039790781.1 mRNA downstream 603003 27694540 ~ 27700331 (-) False LOC120552596
XM_039790783.1 mRNA downstream 603003 27695838 ~ 27700331 (-) False LOC120552596
XM_039790787.1 mRNA upstream 21432 28377079 ~ 29112293 (-) True LOC120552600
XM_039790735.1 mRNA upstream 426243 28781890 ~ 28846252 (-) True LOC120552566
XM_039790785.1 mRNA upstream 574584 28930231 ~ 29094205 (-) True dnah5l
XM_039790743.1 mRNA upstream 769567 29125214 ~ 29147661 (-) True LOC120552571
XM_039790744.1 mRNA upstream 769567 29125214 ~ 29147658 (-) False LOC120552571
TU302917 other downstream 107909 28194528 ~ 28195425 (-) True G223746
TU302918 other downstream 107909 28194528 ~ 28195425 (-) False G223746
TU302806 other downstream 387501 27897498 ~ 27915833 (-) False G223681
TU302801 other downstream 387501 27914603 ~ 27915833 (-) True G223681
TU302750 other downstream 507483 27756346 ~ 27795851 (-) True G223646
XR_005638031.1 other upstream 444852 28800499 ~ 28846253 (-) False LOC120552566
TU303066 other upstream 945043 29300690 ~ 29305614 (-) False LOC120552583
TU303131 other upstream 1124162 29479809 ~ 29543351 (-) False LOC120552608
TU303133 other upstream 1124971 29480618 ~ 29490705 (-) False LOC120552608
TU303182 other upstream 1194748 29550395 ~ 29563368 (-) True G223911

Expression Profile