RNA id: XM_039790756.1


Basic Information

Item Value
RNA id XM_039790756.1
length 4799
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC120552579
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 27195330 ~ 27205153 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtaatttttgacATTACATACCCGCATCAACAGTCCATCTTGACCCAGACTCGAAACGTTTTCCATACTTCCTTCGTCCATCACAGTTGCAACTAACTCCAGGAAATCTGTCACAGAACATGTACATGTCAGAACATAGCAGCTCCAGCTTAAACTTTCCACCTTCTTCCTTTTTCCATCCGTCTGTGGTTGGTCAAAACTCTCTGCCTGTCTATTCTGACCATGAACAGCCTTTAGATGTATCTACCAGAAGAACAAAAGACAGCAATGTTCCCCTTATATTGCACCCTCAACTAAGTCAAATAACTTCTAAAAAGAACAAGATCTGGAGCAAATAGCTCACCAGACATGCCTTTAAAACAAATCTCTGGGGAACTGTATTCTCTTAAGTCATCTTTTAAGTCCCTTAAATCTGGGAAATATATTTGCAGAGGCCCCTGCTTCAGAAAAAGGAAACTACATGAGAAAGATTCCCTTATTATTGCTTGTACCAGTGATCTCCCTGACTACAATTGTTGTCAAACTTCTGGTTCAATCACAGAAACatgaatgacaaaaaatgcaGAAGGTTCTACATACATAGCCCCAAATTTAGCTGCCCCTCTAGATCAAATACAAATACCCACGAACGATCCCTGGGTTACTGTCTGCACTGAAAGAAGCAGAACAAAAGATGCATTTCAGCTTTCGTCTGAAAGCGAAACCAATAGGTGAAAGTGATGCCCCGATGGAAAAAGGAGGCACCTGTTACAGCTGTTCCTTCCAACCTTCAGTATCTCACCAACCCCTCTGGAGACCATGTTTGTGATGAAATTTTAAGCTTATTTGACATTGAGTTGCCTGATATGGTTAGCCTGAGCCAATATAGTTTACTAAATGACTGTGCTGGCCAGAACACTTCCTCTTTTTCTGTTCAATACGATGATCGTAGATCTCCTTTATCAGTccgttttttacattttatgaaaGGAAAATACTCAGATGATGAAGGCCCCAACTTTTCTAACTCTAATTCTACTGTCAATATACAAACCTGCTCTCTCCAAATGGAGGCACCTAATACAGCTGTGCAAACAGAAACTCATGTTTTTATAAACATCACAGGGTTTTCTGGTTTCGATAATGTCAAGGATGAAGATTCACCACCTGACCTGGTCCGAGCGCTGGTTCTGCTGTTCTACAGGCCCCCAGCTGACCCTGATCCTGAATCCCTCCTCAATGTGTTGTTGCTACCGAGGAACGTTGTTCTCCGGGATGTGCAGCGCATCAGGAAGAAGTTAGCTGGAGATGATAGCTACATAGTGACCCCCCACACTTTAAACTGCACCCACAGCAGGAATATTCTCTGTCTACTTGTCCTGAAGACGACTCAGTTCTAGTTCAACCGACAGAAGCAGAGTTTGACTGTGACAACTTCTTCCCATCATTCCAGGTGAGCTTAGAAACAATAATGAAACACATTAAGCTGTTTTTGAGGGACACCAACAGCTCCCAGTGTCTGGGAAAGACGAGTTTGTCTATCATCCACTGGAGTAAGAAGGCCCTGTGGGCCGAGCGACGTGAATCTCTGTCCAAGGACCTGTTCTCAAAAGTCTGCTGGACAAACTGTTGGAGAAAAAGGTGATGGCTGATCCTGAGAGGGAGTCAGCGGACTCGAAGAAAAACTTAAAGATGGATCCCAATCTCATGTCTGTGTATTGAGAACTGAGCTACAGTCAGGATGTAGTTGATCATTTAGACTAGAGGCAGCTTTGATGGAGTTAGACTTATAAAATACAATAGTGTCAGTAGTCATGTAGTCAGTAGTCAACAGGCAGAGACTTGATTTCCCTGAAACATGTTGACATAACACAGGTAGAAAAACATGTTATACAATGTGGAGGGTGTGGAGACAAAACGTAATCAGTGTGGAAACACAATGACAGAGAACGTCCGTGTTTGATAAAGAAGGGCTCAGCATTCAATGCGATATTTAGAATATAAAACGTTTGAAGAATCAAGTAATAACACACAGCTTGTGTGTTCATCCAGCCACAACACGGggTATGTGAGCAAGTAAAACACTGAGGAGCCAAAAAGAATAGAGTGGataaacaattaaaacaaaaaattattgtaatagcctattagaTGTCAAAAAAGGGAATTGAATTTAATCTGTGGCTGAAGAAGGAAGTCGAGAcaaaagagaaaacacagaaaaaggaATAACCAAAATGAACACATAGGTCTCACGAAGTGTCCAGAAAGTCAGATTTTTGACAGACACAAGCACGGAGATCTCCTGACTTCTGTTGCTCATTGAGCTCCACTGACTCGGATCGTGACCTTCATGAACGCAGCAAAATGGCGTCTGCTGCGAAAcatgaaagaagagaaagagaagaatcATGTTTCAGCAGATCAGCCAGAAGTATCAGGAGAGCTCTGTCCAGGATTTGCAGAGGTAGAGATAATTCTCCCCCTGACACCATAGACTTTCCGCTCTCTGAAACACCAAATCTACTTAACTCAATGCATGTTTGCGATGGGGGTAATACTAGATACCAGCTTGACAGGGAAGACGAGGTAcctctgtgtttgttttctccttCCCCCTCTCAGCTGGAAACTGATGGTGGCCTCAGCTCAGTCACAAATGTTGCTGCCCCTCCTGAACAATGCAACACCCAAGATGCATTTCAGCTTTCGTCTGTGAAGTCTGGAAGCAAATCTATAAGTGACATTGATGCTCCGATGGAAATGGAGGCACCTGTTACATCTGTGAACTATTCAGTCACAAACACCCTGCCAGCCCATTCTCTCCTCCAAATCTTCTCCTCAGATCCTGGTTGGAGTAGAAGAGACTCCAGCTGCCTGCCTCGTTCTCCCAGCATGCCTTCACTGAGTCAAATAACCTCTGAAAAGAACAAGACCTTAACACGAGTTGAAAGCTTACCTGAGATTCTGTTAAAAACCAGCTTTGAGGAGTTTACACCTGATATCACTGCTGATGAAAGCGATGAAACCTACAGGTTCCAGTGCTCCTGCCCAGGCCTGTACCAGTGCAGTGTGACCGGCCTGGTGTTCAACATGGAGGGAGAAGGGGACGTGGTCTACAGGACTGTCCCTTGGAACAGGAGGCTACTGGCCCAGCATCACAAGAAGCCTGCAGGACCCCTGTTTGACATCCAATGTCCGCAGCAGTCGGTGTGTCAGCTTCATCTCCCACATTGTGAGATCCGCTCCACAGGTGGATGTGATTTCTTGTCAGTTGCTCATGTGAACGATGAAGGCATTGAGTTTATCAGCCCTCATAGGATAACAGAAACTCATGTTTTTACAAACATCACAGGGTTTTATGGTTTTGGTAATGTCAAGGATGAAGATTCACCACCTGACCTGGTCCGAGCGCTGGTTCTGCTGTTCTACAGGCCCCCAGCTGATCCTGATCTTAGATCCATCCTCAATGTGTTGTTGCTACCAAGGAACATTGTTCTCCGGGATGTGCTGGGCATTCGGAAGGAGTTATTTGCAGATGAGAACTACATAGAGACATCCTCACACTGTAAACTGCACCCATATCAGGAATACACTCTGTCCACTTGTCCTGAAGACGACTCAGTTCTAGTTCAACCAACAGAAGCAGAGTTTGACTGTGACAACTGTGACAACTTCTTGCCATCATTTCAGGTGAGATTAAAAACAATCCTTACAGACATTAACCTGTTTTTGAGAGACACCAACAGCTCCAACAGTGTCTGGGAAAGAGAGGTTAGTCTTTCCACCACCAGAGTAAGAAGGTCCTGTAGGCCGAGCGCTGTAAGTTCTAATGACAGGCTGTTTGCGATGCGGAGCAGCTTCATCGATGGGATATCAGGACCTGTTCTCAAAAGTCTGCTGGACAAACTTTTGGAGAAAAAGGTGATGGCTGATTCTGAGAGGGAGTCAGCGGACTCGatgaaaaacacaagagacaaaGCTCGTTTTGTTGTCGACACAGTGAGGAAGAAAGGTGAAGCTGCTAGTTCAGAGATGATTGAGTTCCTCTGTGATGCTGACCCGTTTCTCTGTAAACATCTTGGGTTGATCTGAAGCTAAATGAACAGGTGATGCATTCAGTTTAAGAGTATTTTCTGCAAGAGACCATGAACACAATAGCCCAGTTTCTTCATAAAAGTGCATTTGTATCTGatcaaatgttaaaatataagAGCTAAATAGTAGGCCTCTAATAGTGCAGCTGGTTAGTTAAATTGGGTTTCCGGTTGATGATGCTGTGTGAACTACTTTTTCTTCGGGGAATCTCCCTGAGCTGTTTTTACAGACTGAACATGAGAGGAAACTGTGAAGATGTTTAGAGCCACCTGCTGGCTGACATGAGTTACTGTAAACTGTTGatgccattttattttacaggaTGTTGGAGATTAAGTAGCTCTTGTTCACAAAAGTTCCATTTGGTGGCTCCTTTGGAGCTTCTGATTGTATCaagtaaatgtttaaatgtccATTTCCTTAAGTCCTTTAAATGGATAGTCcagctctcttcaaagccaccagactccttgtgaattctttgtgttgtaaactcagtggccctcatttatcattCTTGCGTAGAAACGGGCGTATATGTTGGCGTAAGATTATGCTTACACTCCTCTCACCGCCTGATTTATGAAGCTGTGCGTACCTTTGAAATCCAGGTGTACGCAATACCTGCCCTTGATAAATGCCGCGGCTGAAAACGATCGTCATTAGAATaacacgccccaatatattctgggttttgaggcctcgcccctacaatttacga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302547 lncRNA downstream 51394 27044837 ~ 27148007 (-) True G223517
TU302564 lncRNA downstream 111204 27087733 ~ 27088197 (-) True G223534
TU302548 lncRNA downstream 139897 27005323 ~ 27059504 (-) True G223518
TU302535 lncRNA downstream 207651 26982784 ~ 26991750 (-) False G223515
TU302593 lncRNA upstream 48345 27253498 ~ 27254197 (-) True G223552
TU302592 lncRNA upstream 50707 27255860 ~ 27264163 (-) True G223551
TU302595 lncRNA upstream 62095 27267248 ~ 27267746 (-) True G223554
TU302596 lncRNA upstream 70138 27275291 ~ 27277548 (-) True G223555
TU302603 lncRNA upstream 70595 27275748 ~ 27299292 (-) True G223559
XM_039790963.1 mRNA downstream 9857 27136771 ~ 27189544 (-) True LOC120552735
XM_039790962.1 mRNA downstream 70007 27046827 ~ 27129394 (-) True LOC120552734
XM_039790734.1 mRNA downstream 145041 26998052 ~ 27054360 (-) False LOC120552564
XM_039790730.1 mRNA downstream 145045 26987325 ~ 27054356 (-) True LOC120552564
XM_039790772.1 mRNA upstream 18601 27223754 ~ 27224992 (-) True LOC120552591
XM_039790742.1 mRNA upstream 53220 27258373 ~ 28497020 (-) False LOC120552569
XM_039790775.1 mRNA upstream 104859 27310012 ~ 27312365 (-) True LOC120552593
XM_039790740.1 mRNA upstream 285016 27490169 ~ 27514926 (-) True LOC120552569
XM_039790739.1 mRNA upstream 285016 27490169 ~ 27513827 (-) False LOC120552569
TU302546 other downstream 11183 27104598 ~ 27188218 (-) True G223516
TU302432 other downstream 689274 26484235 ~ 26510127 (-) False LOC120552560
TU302433 other downstream 689274 26484235 ~ 26510127 (-) False LOC120552560
TU302435 other downstream 696248 26484235 ~ 26503153 (-) True LOC120552560
TU302399 other downstream 723490 26471704 ~ 26475911 (-) True G223435
TU302573 other upstream 272113 27477266 ~ 27483161 (-) True G223538
TU302721 other upstream 435411 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 474262 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 489701 27694854 ~ 27700381 (-) False LOC120552596
TU302749 other upstream 533629 27738782 ~ 27739972 (-) True G223645

Expression Profile