RNA id: XM_039790772.1


Basic Information

Item Value
RNA id XM_039790772.1
length 1091
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC120552591
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 27223754 ~ 27224992 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATATAAATGAGCAACCATCTTTAAGCCTTTATATTCATCTCTGTTGAGACAACGCTGCTGGGAGAAGATGGCTTCATTTTTTGCTGGTCCTGATTTGAGAATCGTGATGATTGGAAAAACTGGTGTGGGCAAGAGTGCTGTTGGAAACACCATTCTGGGAGAGAAATGTTTCAAATCCCGTCCCAGTTCAGAGTCAGTGACTGAGACCTGTGACAAAGGTGAGACACGCTGGGGTAACAGAGTGGTTAGTGTGGTAGACACACCAGGGATCCTGGACACTGAGACATCTCCAGAATTCATCCAAAGAGAAATTATGAAATGCGTGGAAGTCTCATGTCCTGGTCCTCATGTGTTCCTGCTGGTACTCCAAGTCGGTCGATTCACCAACGAAGAGAAAAACTCTGTGGAAGCCCTGCAAGCGCTGTTTGGTCCTACAGCTAACCAGTACATGATCGTGCTGTTTACCCGTGGTGGTGATCTTGGAGACATGAAAATACAACAGTATGTGCGTGAGGGCAGTCAAGACCTTCAACGAGTCATCCAAAGCTGTGGTAACAGGTACCATGTCATTGACAACACCAGTAAAGACAGAAGTCAAGCAGTGAAACTGATCAAGAAGATTGATGACATGGTTGCAGGAAACGGGGGGGCATACTACACAGATGCCATGTATCAAGAAGTGCATCGACAAATGGGAAGTGGAGGTACTCCCTCATACAGCTTTCTCGGTGCACTGTTCCAGCGTACTGTAAAATTCATAAAAATTATTGCTAGTCGCTAAATAACCATAATCAGTAGCCTAAACATATTATCAATATCCAGTTAAAACTAGACGGCTTCTGTACCCGTGTGTGAACATaaggaatacattttaaaatctttgacacacacacacacacacacttacagtagATAGTGTAGTGCTATTTTGTGTGGATTGAAGCCATAATGACAAAAATACATGTACCAACAACTGCAACACGGAGACTATGATGAGTCCAACAtctaattaaaaatgtttaatgttgacGTGAATGTTTATACACAATGTTATACAGGATTTTATACACATACTCATATATACTCATACA

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302547 lncRNA downstream 75747 27044837 ~ 27148007 (-) True G223517
TU302564 lncRNA downstream 135557 27087733 ~ 27088197 (-) True G223534
TU302548 lncRNA downstream 164250 27005323 ~ 27059504 (-) True G223518
TU302535 lncRNA downstream 232004 26982784 ~ 26991750 (-) False G223515
TU302593 lncRNA upstream 28506 27253498 ~ 27254197 (-) True G223552
TU302592 lncRNA upstream 30868 27255860 ~ 27264163 (-) True G223551
TU302595 lncRNA upstream 42256 27267248 ~ 27267746 (-) True G223554
TU302596 lncRNA upstream 50299 27275291 ~ 27277548 (-) True G223555
TU302603 lncRNA upstream 50756 27275748 ~ 27299292 (-) True G223559
XM_039790757.1 mRNA downstream 18601 27195330 ~ 27205153 (-) False LOC120552579
XM_039790756.1 mRNA downstream 18601 27199401 ~ 27205153 (-) True LOC120552579
XM_039790963.1 mRNA downstream 34210 27136771 ~ 27189544 (-) True LOC120552735
XM_039790962.1 mRNA downstream 94360 27046827 ~ 27129394 (-) True LOC120552734
XM_039790734.1 mRNA downstream 169394 26998052 ~ 27054360 (-) False LOC120552564
XM_039790742.1 mRNA upstream 33381 27258373 ~ 28497020 (-) False LOC120552569
XM_039790775.1 mRNA upstream 85020 27310012 ~ 27312365 (-) True LOC120552593
XM_039790740.1 mRNA upstream 265177 27490169 ~ 27514926 (-) True LOC120552569
XM_039790739.1 mRNA upstream 265177 27490169 ~ 27513827 (-) False LOC120552569
XM_039790741.1 mRNA upstream 265177 27490169 ~ 27504190 (-) False LOC120552569
TU302546 other downstream 35536 27104598 ~ 27188218 (-) True G223516
TU302432 other downstream 713627 26484235 ~ 26510127 (-) False LOC120552560
TU302433 other downstream 713627 26484235 ~ 26510127 (-) False LOC120552560
TU302435 other downstream 720601 26484235 ~ 26503153 (-) True LOC120552560
TU302399 other downstream 747843 26471704 ~ 26475911 (-) True G223435
TU302573 other upstream 252274 27477266 ~ 27483161 (-) True G223538
TU302721 other upstream 415572 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 454423 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 469862 27694854 ~ 27700381 (-) False LOC120552596
TU302749 other upstream 513790 27738782 ~ 27739972 (-) True G223645

Expression Profile