RNA id: XM_039790775.1


Basic Information

Item Value
RNA id XM_039790775.1
length 974
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC120552593
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 27310012 ~ 27312365 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGATAAGCAACTGTATATAAGAGGCATGTTTTCTCCTGTTAGATACTTCTGTGACACTGCAAAGGAAGAAGATCATTTTGCAAAAGGTCGCCTTCATCAACTTCTCCATGAAGATGCTAGCTGTGTCCGTACTTGTTGCAGCCATGATGGCTCTGACTACTGTTCTTCCAGAGGCAGAGGCCGCTGCTGTGGGAGGACAAACAATTCAACCAAGAGAAGATCATGTTGTCAAGAGGTCCACACACTGTGAAAATGGTTGGTCTGTGTACGGAGGCCGCTGTTTCCGCTACTTCCCAGGATCCACCAGCTGGGCTGTGGCTGAGAGATCCTGTCGCGCTTCACACGCACACCTAGCATCTGTGCACAACAGAGATGAGGAACATTGGATTCAGCATTTGGCAGGCCACAAGTTGGCATGGATCGGAGGCTCTGATGCACAACAGGAGGGATTTTGGTTCTGGTCTGATGGTACACATTTCAACTATGTCAACTGGTGTGGAGGAGAGCCTAATAACAGCAGAGGTCAGCACTGTCTACAAATCAATTACTCAGATCATAAGTGCTGGGACGACGACAACTGCAATGTTGGGAGAGGATTTGTCTGTGTCAAGAAACAAGGATGATTCCTGCACCAACACAGAGGCATGAAGTAGGGCTACTTACCATGATGCGCAAACATTGGAAGATGTGCGTTTGTGTCCATGTTTGTGTCCTCATCTGTATTTGTGTCTTCAGTCTCATCCATAACCTAAAGTCTTTAACTCTCTAATCAAATATTTCTTAGCTATCGCTGTAACGCTACTCAAGGAAAGAGGTGACAAGTGACATAAACAGGAGCTGTTTCTTAGGGCCTTGTGCTTTAAAGAGCAGATTGAATGGTTATGGAAAGGATGCTTTATGCCTATTAAGTCTATTCTTCAGTGATTTGTCTTTCTTGTATCATGCATAATTAAAAGGCTCAAGCATTGAAACAA

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302608 lncRNA downstream 8494 27300876 ~ 27301518 (-) True G223563
TU302603 lncRNA downstream 10720 27275748 ~ 27299292 (-) True G223559
TU302596 lncRNA downstream 32464 27275291 ~ 27277548 (-) True G223555
TU302595 lncRNA downstream 42266 27267248 ~ 27267746 (-) True G223554
TU302592 lncRNA downstream 45849 27255860 ~ 27264163 (-) True G223551
TU302628 lncRNA upstream 47457 27359822 ~ 27364272 (-) True G223578
TU302638 lncRNA upstream 48109 27360474 ~ 27365071 (-) False G223579
TU302635 lncRNA upstream 49999 27362364 ~ 27365071 (-) False G223579
TU302630 lncRNA upstream 51988 27364353 ~ 27365071 (-) True G223579
TU302631 lncRNA upstream 51988 27364353 ~ 27365071 (-) False G223579
XM_039790772.1 mRNA downstream 85020 27223754 ~ 27224992 (-) True LOC120552591
XM_039790757.1 mRNA downstream 104859 27195330 ~ 27205153 (-) False LOC120552579
XM_039790756.1 mRNA downstream 104859 27199401 ~ 27205153 (-) True LOC120552579
XM_039790963.1 mRNA downstream 120468 27136771 ~ 27189544 (-) True LOC120552735
XM_039790962.1 mRNA downstream 180618 27046827 ~ 27129394 (-) True LOC120552734
XM_039790740.1 mRNA upstream 177804 27490169 ~ 27514926 (-) True LOC120552569
XM_039790739.1 mRNA upstream 177804 27490169 ~ 27513827 (-) False LOC120552569
XM_039790741.1 mRNA upstream 177804 27490169 ~ 27504190 (-) False LOC120552569
XM_039790786.1 mRNA upstream 203601 27515966 ~ 27625569 (-) True rreb1a
XM_039790778.1 mRNA upstream 381975 27694340 ~ 27700331 (-) False LOC120552596
TU302546 other downstream 121794 27104598 ~ 27188218 (-) True G223516
TU302432 other downstream 799885 26484235 ~ 26510127 (-) False LOC120552560
TU302433 other downstream 799885 26484235 ~ 26510127 (-) False LOC120552560
TU302435 other downstream 806859 26484235 ~ 26503153 (-) True LOC120552560
TU302399 other downstream 834101 26471704 ~ 26475911 (-) True G223435
TU302573 other upstream 164901 27477266 ~ 27483161 (-) True G223538
TU302721 other upstream 328199 27640564 ~ 27685979 (-) False G223640
TU302729 other upstream 367050 27679415 ~ 27685979 (-) True G223640
TU302745 other upstream 382489 27694854 ~ 27700381 (-) False LOC120552596
TU302749 other upstream 426417 27738782 ~ 27739972 (-) True G223645

Expression Profile